LOC113547505


Basic Information

Item Value
gene id LOC113547505
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2732216 ~ 2745395 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947878.2
CAAGAACAATTAAAACATTTGGCAGCTGCATATTTCAAGTTCATTTCCTGTTATAGTGTCTATGTAGACTCCCAGTGATACACTTTTCATGTAGACAGCTGCACTGACCTCCTGCAGACACAATACAAGCGGACTACAGCCTGATTTTCTGTTCTTAATGGGGTGGCCACTTTTGCTGTGTCTTGCTGCCCTGCTCTTTATGAGTGGGGTGGCAACAGGACAAACCACAGATATACTATCTCCACCACCAGAGATAATAGTAGAACTAGAGACAACAAAACTACCAGAGCTACCACCCCCAGgtcTTCATATTCCTGACACTTTCTATCCATTCTGGAATGGAACAGCAGTTGATCTTTTTGCTAATAATGGAATTACGGCTCACATACTTCAGCAGGCATTCCGATACTTTGGATCCGATGAGTACATAATATATGTGAATAGGAATGGTGTACTGAGTTTCGTAGAGCCACTCACTGACTTCAGTCCTGCACTGTATGAAGGCACTAATATCATCGCTCCACTCTGGACTGACTTTGAAATTGACTACAGTGAAAAAGTCATCTATCAGGAAGTCACCAGTGGTCCTCTTCTGTCACAAGCTGCACAAGATATTAATACCATGTTCCCAGGGAATAATTTTTACCCTACATTGCTCTTTATAGCCACTTGGGAAACAATGTCATTCGCCAACAACACAGGGaaTGCGACATTCCAAGCAGTCTTGGTTTCTAATGGTGCAGATGCCTCTTACATCATGCTAAACTACGGACAAATTGATTCTACGGATCAGTACTGGCTGGCTGGCTATGAGGCAGTGGATGGCAGCTACAGTTTCATTCCAGAAGCAGACATCGTTCGCCTCTCTTCAACTAGTAACGTCCAGATTCCCGGTCGCTGGGCTTTCCAAGTTGCCACTCCGGTCACTCCGGTCTTGTCTACTTGTCAGATGCTGAACTGCACTTGGGATGAAATCTGTAGCCAGATACATGGAACTTATGGCTGTGCCTGTGGGCAAAACAATCCAAGGCCAAACACAGACACTTAtgATGCCACTGAAACCTGTTCAGGCAGTACTGgatcactgtctctgtctcgctGTCAGCTCTTTGAAGCCGGATATTCTGCAGATGTTCTCCACCTCAATGACCAAAGCTGCAAAGGGGTGGTCCAAAATGACAGGCTGGTGTTCAACTTTGACAGTAATGCCAACATGTGTGGCACAACTCTGGAGAATAACGccacacacatcatcttcaaGAACAACGTTGGGACGACTGACGGGATAGGTGTGATCAGTCGCAGTGGTGGGCTCAACATTGCCTTTTCCTGTGTGTATCCACTCATCCAGAGCATCTCCATGCCCATGGCCATCCAAGCCACAGGAAGTGTAATCAGCAAGGAACTGTCTACCGAGGGCACGTACCAGATCAGGATGATCCCGTATCCTGATTCTCAGTTCCAGGCTCCATACTCTGGCAATGTGACCCTACAAACGAACCAGCAGCTCTATATAGCTGTGGAAGTGGATCAGTTTGACAGCAATCAGATCGCCCTTGTGCTTGACAAGTGCTGGGCCACACCTGTCAACCAGATGGACTATTACATCCGCTGGGACCTGATCATTGATgaGTGTCCAAATCCCGCTGACGGCACGGTGGTAGTGTTCCAGAATGGTATGTCTACATCCAGCCGCTTCTCCTTCAGGATGTTCACGTTTACCAGCTTCAATAGCAACATCTACCTGCACTGCCAAGTCCACCTCTGTCTGCTCGGATCAGACAACTGTGCACCGTCATGCAATGGAGAACTTGGCAGAAGACGCCGATCTGCAGATTTCTACGACTCGGCTGCTATTACCATGggattttgatttgtttgattgaAACTTGTGATGTAACCGGGCTAtaatttcctctttctctttgttctATGTTTAATCAAAGTATTGCTATGGcttaaaatgaatcattaaactaattaaaaaatctaaagttcaaaatcaattcaaattcaaaatcaaaattaaGCTGCAGTTATAATTCCATTGCAGGTGATTGTACTCATCTGTACTGCTGTACTCATTGTTCTGTCTAATCAgtagtaattaataatacatcagtaataataaatgataaattcttattctta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947878.2 True 2151 mRNA 0.44 16 2732216 2745395

Neighbor

gene id symbol gene type direction distance location
slc4a1b LOC108273570,LOC108410807 coding downstream 93943 2618389 ~ 2638273 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding downstream 116450 2606033 ~ 2615766 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding downstream 142071 2583781 ~ 2590145 (-)
LOC113547524 gjd3 coding downstream 368931 2361824 ~ 2363285 (-)
samd14 NA coding downstream 386543 2335633 ~ 2345673 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding upstream 110841 2856236 ~ 2864989 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding upstream 129121 2874516 ~ 2896348 (-)
erbb2 erbb2,LOC108273851 coding upstream 179200 2924595 ~ 2952904 (-)
pgap3 pgap3,LOC103358570 coding upstream 212044 2957439 ~ 2967729 (-)
mylpfb mylpfb,LOC108274226,LOC107571443,LOC101482131,LOC107674915,LOC102196412,LOC108443170 coding upstream 225935 2971330 ~ 2975144 (-)
G189855 NA non-coding downstream 30796 2694780 ~ 2701420 (-)
G189810 NA non-coding downstream 76709 2655303 ~ 2655507 (-)
G189717 NA non-coding downstream 128120 2603193 ~ 2604096 (-)
G189702 NA non-coding downstream 332740 2394026 ~ 2399476 (-)
G189547 NA non-coding downstream 451463 2280546 ~ 2280753 (-)
G189885 NA non-coding upstream 47432 2792827 ~ 2802964 (-)
G189882 NA non-coding upstream 51112 2796507 ~ 2827807 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding upstream 165617 2911012 ~ 2911255 (-)
G190076 NA non-coding upstream 331636 3077031 ~ 3077290 (-)
G190094 NA non-coding upstream 410516 3155911 ~ 3156150 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 122443 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 521237 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 862223 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 958696 1760834 ~ 1773520 (-)
G189199 NA other downstream 1161143 1568286 ~ 1571073 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 40686 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 47651 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 106660 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2166339 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 2203768 4949163 ~ 4952859 (-)

Expression


Co-expression Network