atp2a1l (atp2a1l,LOC108274121,LOC108411009,LOC107716472,LOC107653256)


Basic Information

Item Value
gene id atp2a1l
gene name atp2a1l,LOC108274121,LOC108411009,LOC107716472,LOC107653256
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3137134 ~ 3151456 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947883.2
GTTTGTTCGCTCTTTCTGTCAGTCCAGCACTCCTGTAAGGAGGGGGGTCAAAGTAACAGGGACAGACTTCTTGGTCCAAAAGAGCATCACAAGCAAAAGAAGCACAAACGGATAGATAAACACTTTCAGCAACACCTATTTTGCTCCTGAAGATCCTTCAGCCCTAGCAGGATGGAGGACGCCCACACCAAGACCCCCGAGGAAGTCATAGCCTTCTTCGGGGTCAGTGAGACCTCCGGGCTTACACCTGACCAGGTCAAGAGGAACTTGGCCAAGTATGGCCCCAatgAATTGCCAGCTGAGGAGGGAAAGTCCCTCTGGGAGCTGGTCATTGAGCAGTTTGAGGATCTGCTTGTGCGAATTCTGCTGCTTGCTGCCTGCATCTCATTTGTGCTGGCTTGGTTTGAGGAAGGTGAGGAGACTGTCACAGCCTTTGTAGAGCCATTTGTCATTCTGCTTATCCTCATCGCCAATGCCGTCGTCGGTGTGTGGCAGGAGCGTAATGCTGAAAGCGCCATTGAGGCTCTGAAGGAGTACGAGCCTGAGATGGGCAAAGTCTACCGATCTGACAGAAAGAGCGTACAGAGGATCAAGGCCAGAGAGATTGTCCCTGGTGACATCGTTGAGGTTTCCGTTGGTGACAAAGTCCCTGCTGATATCAGGATTACCGCTATCCGTTCCACCACCCTGCGTGTTGACCAGTCCATCCTTACTGGTGAGTCTGTCAGTGTGATCAAGCATACCGAACCCGTCCCTGACCTCAGAGCCGTCAACCAGGACAAGAAGAACATGCTTTTCTCTGGCACCAACATTGCTGCTGGCAAGGCTATCGGCGTTTGCATCGCCACCGGCGTCTCCACCGAGATCGGCAAGATCCGTGACCAGATGGCTGCCACTGAGCAGGAGAAGACCCCTCTGCAGCAGAAGCTGGATGAGTTTGGCGAGCAGCTCTCCAAAGTCATCTCTCTGATTTGTGTCGCCGTCTGGATGATCAACATCGGCCACTTCAACGATCCCGTCCACGGTGGCTCATGGATCCGTGGCGCTGTTTATTACTTCAAGATTGCCGTTGCCCTGGCTGTCGCTGCCATCCCTGAGGGTCTGCCTGCTGTCATCACTACCTGTCTGGCTCTCGGTACCCGTCGTATGGCCAAGAAGAACGCCATCGTCCGTTCTCTGCCCTCTGTGGAGACTCTGGGCTGCACCTCTGTCATCTGCTCAGACAAAACCGGCACCCTCACCACCAACCAGATGTGTGTCACAAAGATGTTCATCATTGACAGAGTGGATGGTGATCATGTGTCCCTGGATTGCTTTGATATCTCCGGCTCCAAATACACTCCCGAAGGCGAGGTGACTAGAGGAGGTGCTAAAGTTGACTGCAGTCAGTACGATGGCCTGGTGGAGCTCGCCACCATCTGCGCCCTGTGCAACGACTCCTCTCTCGACTACAACGAGGCTAAGAAGATCTATGAGAAGGTTGGTGAGGCCACTGAAACTGCTCTGTGCTGCCTGGTGGAGAAAATGAATGTGTTCAAGACCAGCGTTAGCAACCTGTCCAGTGTGGAGAGAGCCAACGCCTGCTGCAGCgttgtgaAGCAGCTGATGAAGAAGAACTTTACCCTGGAGTTCTCCCGTGACAGGAAGTCCATGTCTGTGTACTGCACCCCAACCAGAGGAGACAGCGGCAGCAAGATGTTCGTGAAGGGTGCCCCCGAgggtgtgattgacaggtgcgCCTATGTGCGTGTTGGCTCCGCCCGTGTGCCCCTGACTGGCCCCATTAAAGAGAAGATCATGACCATCATTAAGGAGTGGGGTACTGGCCGTGACACACTGCGTTGCCTCGCCCTCGCCACTCGTGACACTCCACTGAAGGTCGAGGAGATGAACCTTGATGACTCCACCAAGTTTGCTGACTATGAGACTGACCTGACCTTCGTTGGCTGTGTCGGTATGCTGGATCCCCCTCGTAAAGAAGTCACTGGCTCCATTGAGCTCTGCAGGGCTGCTGGCATTCGTGTCATCATGATCACTGGTGATAACAAGGGAACTGCTGTGGCTATTTGCCGTCGCATTGGCATCTTTGGTGAGGACGAGGATGTGTCTGGAAGAGCCTACACTGGCCGTGAGTTTGATGATCTGCCTCGTGCCGAGCAGAGTGAAGCTGTAACCAGGGCCTGCTGCTTCGCCCGTGTTGAGCCTTCCCACAAGTCCAAGATTGTTGAGTACCTGCAGGGCTACGATGAGATCACTGCCATGACTGGTGATGGTGTGAATGATGCCCCTGCCCTGAAGAAGGCAGAGATTGGTATTGCCATGGGCTCTGGCACTGCCGTTGCCAAGTCAGCCTCTGAGATGGTCCTGGCCGACGACAACTTCTCCTCCATTGTGGCTGCTGTTGAGGAGGGCAGAGCTATCTACAACAACATGAAGCAGTTCATCCGCTACCTGATCTCTTCCAACGTTGGAGAGGTCGTCTGTATCTTCCTCACTGCTGCTCTCGGTCTTCCTGAGGCTCTGATTCCAGTACAGCTGTTGTGGGTGAACCTGGTCACTGATGGTCTGCCTGCCACCGCTTTGGGCTTCAACCCCCCCGATCTGGACATCATGGGCAGACCTCCACGTTCCCCCAAGGAGCCCCTCATTTCAGGCTGGCTCTTCTTCAGATACCTGGCCATCGGTGGATACGTCGGTGCTGCCACTGTTGGTGCTGCTGCCTACTGGTTCCTGTATGATGACGAGGGCCCAAAAGTGACCTACCATCAGCTGTCCCACTTCATGCAGTGCCATGATGAAAACGAGGACTTTGCTGGAATTGAATGTGAGGTGTTTGAGGCTGCTCCTCCCATGACCATGGCCCTGTCTGTTCTGGTCACCATTGAGATGTGCAACGCTCTTAACAGCTTGTCTGAGAACCAGTCACTTATCCGCATGCCTCCATGGAGCAACTGCTGGCTGTTGGCCGCCATGACCCTCTCCATGTCCCTGCATTTCATGATCATCTACGTGGACCCCCTGCCCCTGGTGTTCAAGCTGACCCACTTGAATGTGGATCAGTGGATCGTGGTACTGAAGCTGTCCTTCCCCGTCATCCTCCTTGATGAGGTGTTGAAGTTCGTTGCCCGCAACTATCTGGAGGCCTAAACCAGTTCCCTCCCTCAGTTACCAAGTAACAAAAGCAAGGTAAGAGTTCAATCTTGTGAAAGAGTGTAAGAGGCAAGAGAAGGAGACGACGAAAACTAGAGGAGGAGTCGAGAGATGACATCGAGCCGGAGAGGAGCCTTTTTATGAGCCCTCCACCTCGgggagagagaacaaaacacaggaaaatctatgaaaaaaaaaatctataaaactgACTGATagaaaatctatttaaaaaaactgtttatggaaatgattaaattaatatataggGAAACGGTTCCAAATTAGTGTTTGACTGatgattcattttattcttaaatCTAATAACAAATGtattaaagttacattttttgttaaacttgTA
>XM_034309530.1
CGTTTGTTCGCTCTTTCTGTCAGTCCAGCACTCCTGTAAGGAGGGGGGTCAAAGTAACAGGGACAGACTTCTTGGTCCAAAAGAGCATCACAAGCAAAAGAAGCACAAACGGATAGATAAACACTTTCAGCAACACCTATTTTGCTCCTGAAGATCCTTCAGCCCTAGCAGGATGGAGGACGCCCACACCAAGACCCCCGAGGAAGTCATAGCCTTCTTCGGGGTCAGTGAGACCTCCGGGCTTACACCTGACCAGGTCAAGAGGAACTTGGCCAAGTATGGCCCCAatgAATTGCCAGCTGAGGAGGGAAAGTCCCTCTGGGAGCTGGTCATTGAGCAGTTTGAGGATCTGCTTGTGCGAATTCTGCTGCTTGCTGCCTGCATCTCATTTGTGCTGGCTTGGTTTGAGGAAGGTGAGGAGACTGTCACAGCCTTTGTAGAGCCATTTGTCATTCTGCTTATCCTCATCGCCAATGCCGTCGTCGGTGTGTGGCAGGAGCGTAATGCTGAAAGCGCCATTGAGGCTCTGAAGGAGTACGAGCCTGAGATGGGCAAAGTCTACCGATCTGACAGAAAGAGCGTACAGAGGATCAAGGCCAGAGAGATTGTCCCTGGTGACATCGTTGAGGTTTCCGTTGGTGACAAAGTCCCTGCTGATATCAGGATTACCGCTATCCGTTCCACCACCCTGCGTGTTGACCAGTCCATCCTTACTGGTGAGTCTGTCAGTGTGATCAAGCATACCGAACCCGTCCCTGACCTCAGAGCCGTCAACCAGGACAAGAAGAACATGCTTTTCTCTGGCACCAACATTGCTGCTGGCAAGGCTATCGGCGTTTGCATCGCCACCGGCGTCTCCACCGAGATCGGCAAGATCCGTGACCAGATGGCTGCCACTGAGCAGGAGAAGACCCCTCTGCAGCAGAAGCTGGATGAGTTTGGCGAGCAGCTCTCCAAAGTCATCTCTCTGATTTGTGTCGCCGTCTGGATGATCAACATCGGCCACTTCAACGATCCCGTCCACGGTGGCTCATGGATCCGTGGCGCTGTTTATTACTTCAAGATTGCCGTTGCCCTGGCTGTCGCTGCCATCCCTGAGGGTCTGCCTGCTGTCATCACTACCTGTCTGGCTCTCGGTACCCGTCGTATGGCCAAGAAGAACGCCATCGTCCGTTCTCTGCCCTCTGTGGAGACTCTGGGCTGCACCTCTGTCATCTGCTCAGACAAAACCGGCACCCTCACCACCAACCAGATGTGTGTCACAAAGATGTTCATCATTGACAGAGTGGATGGTGATCATGTGTCCCTGGATTGCTTTGATATCTCCGGCTCCAAATACACTCCCGAAGGCGAGGTGACTAGAGGAGGTGCTAAAGTTGACTGCAGTCAGTACGATGGCCTGGTGGAGCTCGCCACCATCTGCGCCCTGTGCAACGACTCCTCTCTCGACTACAACGAGGCTAAGAAGATCTATGAGAAGGTTGGTGAGGCCACTGAAACTGCTCTGTGCTGCCTGGTGGAGAAAATGAATGTGTTCAAGACCAGCGTTAGCAACCTGTCCAGTGTGGAGAGAGCCAACGCCTGCTGCAGCgttgtgaAGCAGCTGATGAAGAAGAACTTTACCCTGGAGTTCTCCCGTGACAGGAAGTCCATGTCTGTGTACTGCACCCCAACCAGAGGAGACAGCGGCAGCAAGATGTTCGTGAAGGGTGCCCCCGAgggtgtgattgacaggtgcgCCTATGTGCGTGTTGGCTCCGCCCGTGTGCCCCTGACTGGCCCCATTAAAGAGAAGATCATGACCATCATTAAGGAGTGGGGTACTGGCCGTGACACACTGCGTTGCCTCGCCCTCGCCACTCGTGACACTCCACTGAAGGTCGAGGAGATGAACCTTGATGACTCCACCAAGTTTGCTGACTATGAGACTGACCTGACCTTCGTTGGCTGTGTCGGTATGCTGGATCCCCCTCGTAAAGAAGTCACTGGCTCCATTGAGCTCTGCAGGGCTGCTGGCATTCGTGTCATCATGATCACTGGTGATAACAAGGGAACTGCTGTGGCTATTTGCCGTCGCATTGGCATCTTTGGTGAGGACGAGGATGTGTCTGGAAGAGCCTACACTGGCCGTGAGTTTGATGATCTGCCTCGTGCCGAGCAGAGTGAAGCTGTAACCAGGGCCTGCTGCTTCGCCCGTGTTGAGCCTTCCCACAAGTCCAAGATTGTTGAGTACCTGCAGGGCTACGATGAGATCACTGCCATGACTGGTGATGGTGTGAATGATGCCCCTGCCCTGAAGAAGGCAGAGATTGGTATTGCCATGGGCTCTGGCACTGCCGTTGCCAAGTCAGCCTCTGAGATGGTCCTGGCCGACGACAACTTCTCCTCCATTGTGGCTGCTGTTGAGGAGGGCAGAGCTATCTACAACAACATGAAGCAGTTCATCCGCTACCTGATCTCTTCCAACGTTGGAGAGGTCGTCTGTATCTTCCTCACTGCTGCTCTCGGTCTTCCTGAGGCTCTGATTCCAGTACAGCTGTTGTGGGTGAACCTGGTCACTGATGGTCTGCCTGCCACCGCTTTGGGCTTCAACCCCCCCGATCTGGACATCATGGGCAGACCTCCACGTTCCCCCAAGGAGCCCCTCATTTCAGGCTGGCTCTTCTTCAGATACCTGGCCATCGGTGGATACGTCGGTGCTGCCACTGTTGGTGCTGCTGCCTACTGGTTCCTGTATGATGACGAGGGCCCAAAAGTGACCTACCATCAGCTGTCCCACTTCATGCAGTGCCATGATGAAAACGAGGACTTTGCTGGAATTGAATGTGAGGTGTTTGAGGCTGCTCCTCCCATGACCATGGCCCTGTCTGTTCTGGTCACCATTGAGATGTGCAACGCTCTTAACAGCTTGTCTGAGAACCAGTCACTTATCCGCATGCCTCCATGGAGCAACTGCTGGCTGTTGGCCGCCATGACCCTCTCCATGTCCCTGCATTTCATGATCATCTACGTGGACCCCCTGCCCCTGGTGTTCAAGCTGACCCACTTGAATGTGGATCAGTGGATCGTGGTACTGAAGCTGTCCTTCCCCGTCATCCTCCTTGATGAGGTGTTGAAGTTCGTTGCCCGCAACTATCTGGAGGGTAAGAGTTCAATCTTGTGAAAGAGTGTAAGAGGCAAGAGAAGGAGACGACGAAAACTAGAGGAGGAGTCGAGAGATGACATCGAGCCGGAGAGGAGCCTTTTTATGAGCCCTCCACCTCGgggagagagaacaaaacacaggaaaatctatgaaaaaaaaaatctataaaactgACTGATagaaaatctatttaaaaaaactgtttatggaaatgattaaattaatatataggGAAACGGTTCCAAATTAGTGTTTGACTGatgattcattttattcttaaatCTAATAACAAATGtattaaagttacattttttgttaaacttgTA

Function

symbol description
atp2a1l Predicted to enable P-type calcium transporter activity. Predicted to be involved in calcium ion transmembrane transport and cellular calcium ion homeostasis. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane and sarcoplasmic reticulum. Predicted to be active in sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in gill. Human ortholog(s) of this gene implicated in Brody myopathy. Orthologous to human ATP2A1 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1).

NR:

description
sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform X2

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K05853 ATP2A; P-type Ca2+ transporter type 2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947883.2 True 3514 mRNA 0.52 24 3137134 3151455
XM_034309530.1 False 3471 mRNA 0.52 23 3137134 3151456

Neighbor

gene id symbol gene type direction distance location
LOC113547508 LOC108274004 coding downstream 19070 3107185 ~ 3118064 (-)
LOC113547488 doc2a,LOC108274005,LOC108411015,LOC102798681 coding downstream 68993 3033048 ~ 3068141 (-)
LOC113547498 LOC108274359,LOC108274358,LOC108274122 coding downstream 116375 3008265 ~ 3020759 (-)
LOC113547499 LOC108274363 coding downstream 138853 2996966 ~ 2998281 (-)
LOC113547497 LOC108274228 coding downstream 147957 2985658 ~ 2989177 (-)
ppp1cab ppp1cab,LOC108274218,LOC108413689,LOC105894037,LOC107556769,LOC107674520 coding upstream 8532 3159988 ~ 3167791 (-)
LOC113547533 paqr4 coding upstream 25448 3176904 ~ 3180468 (-)
cmn NA coding upstream 31614 3183070 ~ 3205679 (-)
patl2 patl2 coding upstream 61402 3212858 ~ 3221523 (-)
LOC113547516 tgfb1i1,tgfi1 coding upstream 70974 3222430 ~ 3233921 (-)
G190076 NA non-coding downstream 59844 3077031 ~ 3077290 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding downstream 225879 2911012 ~ 2911255 (-)
G189882 NA non-coding downstream 309327 2796507 ~ 2827807 (-)
G189885 NA non-coding downstream 334170 2792827 ~ 2802964 (-)
G189855 NA non-coding downstream 435714 2694780 ~ 2701420 (-)
G190094 NA non-coding upstream 4455 3155911 ~ 3156150 (-)
G190097 NA non-coding upstream 19427 3170883 ~ 3171571 (-)
G190099 NA non-coding upstream 21604 3173060 ~ 3173967 (-)
G190100 NA non-coding upstream 22621 3174077 ~ 3175635 (-)
G190188 NA non-coding upstream 197918 3349374 ~ 3349729 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 281641 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 309382 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 325743 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 527361 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 926155 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 1760278 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 1797707 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 1908042 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2333235 5484691 ~ 5490925 (-)
G191430 NA other upstream 2459664 5611120 ~ 5613954 (-)

Expression


Co-expression Network