lrrc3ca (lrrc3c,lrrc3ca,LOC107598050,LOC107716457,LOC107660473,LOC107678436)


Basic Information

Item Value
gene id lrrc3ca
gene name lrrc3c,lrrc3ca,LOC107598050,LOC107716457,LOC107660473,LOC107678436
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2270632 ~ 2287054 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947884.2
TGGCGCACGCGAGCGAGTCATTTGTCGGAGATTCTCGACACGAGCGCGTGCCGCCGGTTCTGctctgcactctctctctctctctctctctcacacacacacacacgcactcacacacacacacgcgcgctcTCTCGGTCTCGCACGCGCGCGCTGTTTGTGCGACGCGCTCGCGCCTTGTGTTGCGCTTCATGAAGTGAAGATGTGAAAGGGGAACTTTCCAAGGCTCCGGTCACGAGCGCGAGAGAAACGAATGATCGCGACACCTCCTCTTGCCCCACGGATAGTGCTCTGAAGGGAGTATGCCCCCATTTCACCATGCCGATGCCGTCCTATTGGCTGCTCCGGCACTCCATGGTCATGTGCTTGCTTCTACACAGCTTGGTGTTGATGACGCTCTGCTTCCACCACGCAGCCACTTCCTGCTCAAAACACTGCTACTGCTCCGAGAGCGAGGGTCCGTCTGGGGGCAAGACCATGCGGTGCAGCAACCTACGCCTCACCGAGATCCCAAATGACATCCCGAATGACACACGGCGCCTCTACCTCGACTACAACATGCTGACCAGTGTCCCTGCCAATGCCTTTCAAGATCTTCCTCTGCTGGCTGAACTTGATCTTTCCCACAATGAGCTGGCACTGCTTGAGCCTGGAGCTTTCCGGGGCCTGGCTGCCTCCTTGCTATTCCTGGATCTGTCCTCCAACCAGCTGGTGACGCTGGATCCTGAAGCTTTTGAAGGCGTGAGGGCTCGATCCAATCTGACTGGCAACCCCTGGCACTGTGACTGTCGGTTACAGACGGCACTTCCACGCCTCGATCTGGAGCCTGTGTCTCTCACCGGCATTGTTTGCCAAACATCAGAGCCCGAGGACTCAGGTGCCCAAGGTGTGCCCTTTCTGCTGGCCAAAGACTTGGACCTATGCGTGGTGCTTAAAAAGACCACAGACGTGGCCATGCTAGTGACCATGTTTGGATGGTTCACCATGGTCATCTCCTACCTGGTCTACTACGTGCGGCATAATCAAGAAGATGCCAGGCGCCACCTGGAGTATCTCAAGTCTCTGCCCAGCAGGCAGGGCAAGTCTGAGGAGTCTTCCACCATTAGCACTGTGGTTTGACAGCAGACTGTCACTAAAGGGGGAAGCTTCTCAGGCAAGCAAAGGGCAATGGGCACACTCAGAGTCTAGCCTAGTAGAGGAACCAATAACTGGGTTATCATCTCTGGTAATAACAGGCTTTGTGGACTGCAGCTTTCCGGATCATCAGAAAGTGAAAGTAACCAGCcttcaaaaacaaacatggtgaCTTAGCAGCCGGAAAAATCCTGCCGCAAGTCTTCCATTTCAGACTCGAAGGTAAAGACAAACCCTCCTTGGGAACCTACATGCCAGCATAGCAAGAGAATTGCAGGGGTCATCTAATCTTATCCAGATAAATAATTGATCCAGGACCGGCCAGGCTCCAAGTCTGCAGTGGCTGAGTGGTTTGTCTGCTCAGAATGCTTTTGAAATAGGACGGGTTTTTACTTTCCTCCACATTCCTCTAGTTATTTTTGAAAGGATCCCCATTTATTTGCAGGAGCATGTAGCATAAAGAAAGCACTCTCTTCCATTATGGCATTAACATGAAAAGCTCTTATATTTATCCCTCCAGACTACATTCAGTTTTATAACAGAGCCACGCATAAACATACACTTCAGTCATTTTTAGGATTCTGAATAAATGGTGAAAATCAGTGTgtatattttgataattttgtAATGGAACTAATCATATTGAAACAAAGGTGAAGGACACTAGCTGGTCCGGTATTTTCCAGCTCTTTCAGGGGAAATTACCACATGagcaaaatgctgtttttttgttgtttttttttacttttttttttcttaatgatgaaatatacagtacatcgaTCACACTGAATACAGTAATTGATTGTGTTGTTCCCAGTCCTGGTCCTGGAATTTCCCTGAATATTTTAGCACTTTTCCTGTTCTAACAGCATTAATCCAACGAATTAAAGCCAAACACtga
>XM_026947886.2
ACTATGGCTGGTTGTTTTGAAAAACGAGAGGCGATAAACATCTCGGCTTGTTTCCTAGCGGACCTTTTGGCAACGCCTGATACAACAGTCCATAAGGATCTTTAAGGAATGATCGCGACACCTCCTCTTGCCCCACGGATAGTGCTCTGAAGGGAGTATGCCCCCATTTCACCATGCCGATGCCGTCCTATTGGCTGCTCCGGCACTCCATGGTCATGTGCTTGCTTCTACACAGCTTGGTGTTGATGACGCTCTGCTTCCACCACGCAGCCACTTCCTGCTCAAAACACTGCTACTGCTCCGAGAGCGAGGGTCCGTCTGGGGGCAAGACCATGCGGTGCAGCAACCTACGCCTCACCGAGATCCCAAATGACATCCCGAATGACACACGGCGCCTCTACCTCGACTACAACATGCTGACCAGTGTCCCTGCCAATGCCTTTCAAGATCTTCCTCTGCTGGCTGAACTTGATCTTTCCCACAATGAGCTGGCACTGCTTGAGCCTGGAGCTTTCCGGGGCCTGGCTGCCTCCTTGCTATTCCTGGATCTGTCCTCCAACCAGCTGGTGACGCTGGATCCTGAAGCTTTTGAAGGCGTGAGGGCTCGATCCAATCTGACTGGCAACCCCTGGCACTGTGACTGTCGGTTACAGACGGCACTTCCACGCCTCGATCTGGAGCCTGTGTCTCTCACCGGCATTGTTTGCCAAACATCAGAGCCCGAGGACTCAGGTGCCCAAGGTGTGCCCTTTCTGCTGGCCAAAGACTTGGACCTATGCGTGGTGCTTAAAAAGACCACAGACGTGGCCATGCTAGTGACCATGTTTGGATGGTTCACCATGGTCATCTCCTACCTGGTCTACTACGTGCGGCATAATCAAGAAGATGCCAGGCGCCACCTGGAGTATCTCAAGTCTCTGCCCAGCAGGCAGGGCAAGTCTGAGGAGTCTTCCACCATTAGCACTGTGGTTTGACAGCAGACTGTCACTAAAGGGGGAAGCTTCTCAGGCAAGCAAAGGGCAATGGGCACACTCAGAGTCTAGCCTAGTAGAGGAACCAATAACTGGGTTATCATCTCTGGTAATAACAGGCTTTGTGGACTGCAGCTTTCCGGATCATCAGAAAGTGAAAGTAACCAGCcttcaaaaacaaacatggtgaCTTAGCAGCCGGAAAAATCCTGCCGCAAGTCTTCCATTTCAGACTCGAAGGTAAAGACAAACCCTCCTTGGGAACCTACATGCCAGCATAGCAAGAGAATTGCAGGGGTCATCTAATCTTATCCAGATAAATAATTGATCCAGGACCGGCCAGGCTCCAAGTCTGCAGTGGCTGAGTGGTTTGTCTGCTCAGAATGCTTTTGAAATAGGACGGGTTTTTACTTTCCTCCACATTCCTCTAGTTATTTTTGAAAGGATCCCCATTTATTTGCAGGAGCATGTAGCATAAAGAAAGCACTCTCTTCCATTATGGCATTAACATGAAAAGCTCTTATATTTATCCCTCCAGACTACATTCAGTTTTATAACAGAGCCACGCATAAACATACACTTCAGTCATTTTTAGGATTCTGAATAAATGGTGAAAATCAGTGTgtatattttgataattttgtAATGGAACTAATCATATTGAAACAAAGGTGAAGGACACTAGCTGGTCCGGTATTTTCCAGCTCTTTCAGGGGAAATTACCACATGagcaaaatgctgtttttttgttgtttttttttacttttttttttcttaatgatgaaatatacagtacatcgaTCACACTGAATACAGTAATTGATTGTGTTGTTCCCAGTCCTGGTCCTGGAATTTCCCTGAATATTTTAGCACTTTTCCTGTTCTAACAGCATTAATCCAACGAATTAAAGCCAAACACtga
>XM_034309182.1
AAGGTACATGAAAAGAACAGGAATGATCGCGACACCTCCTCTTGCCCCACGGATAGTGCTCTGAAGGGAGTATGCCCCCATTTCACCATGCCGATGCCGTCCTATTGGCTGCTCCGGCACTCCATGGTCATGTGCTTGCTTCTACACAGCTTGGTGTTGATGACGCTCTGCTTCCACCACGCAGCCACTTCCTGCTCAAAACACTGCTACTGCTCCGAGAGCGAGGGTCCGTCTGGGGGCAAGACCATGCGGTGCAGCAACCTACGCCTCACCGAGATCCCAAATGACATCCCGAATGACACACGGCGCCTCTACCTCGACTACAACATGCTGACCAGTGTCCCTGCCAATGCCTTTCAAGATCTTCCTCTGCTGGCTGAACTTGATCTTTCCCACAATGAGCTGGCACTGCTTGAGCCTGGAGCTTTCCGGGGCCTGGCTGCCTCCTTGCTATTCCTGGATCTGTCCTCCAACCAGCTGGTGACGCTGGATCCTGAAGCTTTTGAAGGCGTGAGGGCTCGATCCAATCTGACTGGCAACCCCTGGCACTGTGACTGTCGGTTACAGACGGCACTTCCACGCCTCGATCTGGAGCCTGTGTCTCTCACCGGCATTGTTTGCCAAACATCAGAGCCCGAGGACTCAGGTGCCCAAGGTGTGCCCTTTCTGCTGGCCAAAGACTTGGACCTATGCGTGGTGCTTAAAAAGACCACAGACGTGGCCATGCTAGTGACCATGTTTGGATGGTTCACCATGGTCATCTCCTACCTGGTCTACTACGTGCGGCATAATCAAGAAGATGCCAGGCGCCACCTGGAGTATCTCAAGTCTCTGCCCAGCAGGCAGGGCAAGTCTGAGGAGTCTTCCACCATTAGCACTGTGGTTTGACAGCAGACTGTCACTAAAGGGGGAAGCTTCTCAGGCAAGCAAAGGGCAATGGGCACACTCAGAGTCTAGCCTAGTAGAGGAACCAATAACTGGGTTATCATCTCTGGTAATAACAGGCTTTGTGGACTGCAGCTTTCCGGATCATCAGAAAGTGAAAGTAACCAGCcttcaaaaacaaacatggtgaCTTAGCAGCCGGAAAAATCCTGCCGCAAGTCTTCCATTTCAGACTCGAAGGTAAAGACAAACCCTCCTTGGGAACCTACATGCCAGCATAGCAAGAGAATTGCAGGGGTCATCTAATCTTATCCAGATAAATAATTGATCCAGGACCGGCCAGGCTCCAAGTCTGCAGTGGCTGAGTGGTTTGTCTGCTCAGAATGCTTTTGAAATAGGACGGGTTTTTACTTTCCTCCACATTCCTCTAGTTATTTTTGAAAGGATCCCCATTTATTTGCAGGAGCATGTAGCATAAAGAAAGCACTCTCTTCCATTATGGCATTAACATGAAAAGCTCTTATATTTATCCCTCCAGACTACATTCAGTTTTATAACAGAGCCACGCATAAACATACACTTCAGTCATTTTTAGGATTCTGAATAAATGGTGAAAATCAGTGTgtatattttgataattttgtAATGGAACTAATCATATTGAAACAAAGGTGAAGGACACTAGCTGGTCCGGTATTTTCCAGCTCTTTCAGGGGAAATTACCACATGagcaaaatgctgtttttttgttgtttttttttacttttttttttcttaatgatgaaatatacagtacatcgaTCACACTGAATACAGTAATTGATTGTGTTGTTCCCAGTCCTGGTCCTGGAATTTCCCTGAATATTTTAGCACTTTTCCTGTTCTAACAGCATTAATCCAACGAATTAAAGCCAAACACtga
>XM_034309183.1
GTGTGGCTGGTGAAATAACTGGCAACCAGATTTTATACAGGCAGCTTAGAAAGATGGTCAGTGATCAGATGTTACAGTATATCAAGATGGAATGATCGCGACACCTCCTCTTGCCCCACGGATAGTGCTCTGAAGGGAGTATGCCCCCATTTCACCATGCCGATGCCGTCCTATTGGCTGCTCCGGCACTCCATGGTCATGTGCTTGCTTCTACACAGCTTGGTGTTGATGACGCTCTGCTTCCACCACGCAGCCACTTCCTGCTCAAAACACTGCTACTGCTCCGAGAGCGAGGGTCCGTCTGGGGGCAAGACCATGCGGTGCAGCAACCTACGCCTCACCGAGATCCCAAATGACATCCCGAATGACACACGGCGCCTCTACCTCGACTACAACATGCTGACCAGTGTCCCTGCCAATGCCTTTCAAGATCTTCCTCTGCTGGCTGAACTTGATCTTTCCCACAATGAGCTGGCACTGCTTGAGCCTGGAGCTTTCCGGGGCCTGGCTGCCTCCTTGCTATTCCTGGATCTGTCCTCCAACCAGCTGGTGACGCTGGATCCTGAAGCTTTTGAAGGCGTGAGGGCTCGATCCAATCTGACTGGCAACCCCTGGCACTGTGACTGTCGGTTACAGACGGCACTTCCACGCCTCGATCTGGAGCCTGTGTCTCTCACCGGCATTGTTTGCCAAACATCAGAGCCCGAGGACTCAGGTGCCCAAGGTGTGCCCTTTCTGCTGGCCAAAGACTTGGACCTATGCGTGGTGCTTAAAAAGACCACAGACGTGGCCATGCTAGTGACCATGTTTGGATGGTTCACCATGGTCATCTCCTACCTGGTCTACTACGTGCGGCATAATCAAGAAGATGCCAGGCGCCACCTGGAGTATCTCAAGTCTCTGCCCAGCAGGCAGGGCAAGTCTGAGGAGTCTTCCACCATTAGCACTGTGGTTTGACAGCAGACTGTCACTAAAGGGGGAAGCTTCTCAGGCAAGCAAAGGGCAATGGGCACACTCAGAGTCTAGCCTAGTAGAGGAACCAATAACTGGGTTATCATCTCTGGTAATAACAGGCTTTGTGGACTGCAGCTTTCCGGATCATCAGAAAGTGAAAGTAACCAGCcttcaaaaacaaacatggtgaCTTAGCAGCCGGAAAAATCCTGCCGCAAGTCTTCCATTTCAGACTCGAAGGTAAAGACAAACCCTCCTTGGGAACCTACATGCCAGCATAGCAAGAGAATTGCAGGGGTCATCTAATCTTATCCAGATAAATAATTGATCCAGGACCGGCCAGGCTCCAAGTCTGCAGTGGCTGAGTGGTTTGTCTGCTCAGAATGCTTTTGAAATAGGACGGGTTTTTACTTTCCTCCACATTCCTCTAGTTATTTTTGAAAGGATCCCCATTTATTTGCAGGAGCATGTAGCATAAAGAAAGCACTCTCTTCCATTATGGCATTAACATGAAAAGCTCTTATATTTATCCCTCCAGACTACATTCAGTTTTATAACAGAGCCACGCATAAACATACACTTCAGTCATTTTTAGGATTCTGAATAAATGGTGAAAATCAGTGTgtatattttgataattttgtAATGGAACTAATCATATTGAAACAAAGGTGAAGGACACTAGCTGGTCCGGTATTTTCCAGCTCTTTCAGGGGAAATTACCACATGagcaaaatgctgtttttttgttgtttttttttacttttttttttcttaatgatgaaatatacagtacatcgaTCACACTGAATACAGTAATTGATTGTGTTGTTCCCAGTCCTGGTCCTGGAATTTCCCTGAATATTTTAGCACTTTTCCTGTTCTAACAGCATTAATCCAACGAATTAAAGCCAAACACtga

Function

symbol description
lrrc3ca Predicted to be active in extracellular matrix and extracellular space. Orthologous to human LRRC3C (leucine rich repeat containing 3C).
lrrc3c Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space.

NR:

description
leucine-rich repeat-containing protein 3B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947884.2 True 2038 mRNA 0.49 2 2280510 2287054
XM_026947886.2 False 1893 mRNA 0.47 2 2283308 2287054
XM_034309182.1 False 1807 mRNA 0.48 2 2270632 2287054
XM_034309183.1 False 1876 mRNA 0.47 2 2285069 2287054

Neighbor

gene id symbol gene type direction distance location
irf9 irf9 coding upstream 86434 2173539 ~ 2184198 (+)
lsm5 lsm5 coding upstream 104851 2163174 ~ 2165781 (+)
avl9 avl9 coding upstream 108059 2147896 ~ 2162573 (+)
kbtbd2 kbtbd2 coding upstream 127680 2135179 ~ 2142952 (+)
LOC113535349 LOC108273450 coding upstream 153523 2104325 ~ 2117109 (+)
LOC113547531 NA coding downstream 15179 2302233 ~ 2304287 (+)
top2a top2a,LOC107598028,LOC107660475 coding downstream 59991 2347045 ~ 2361095 (+)
raraa raraa,rara,LOC108273576,LOC108410801,LOC107660476,LOC107678286,LOC107716487,LOC107745620 coding downstream 107022 2394076 ~ 2486796 (+)
mki67 NA coding downstream 202755 2489809 ~ 2502830 (+)
tut1 tut1 coding downstream 216340 2503394 ~ 2515254 (+)
G189477 NA non-coding upstream 124876 2143152 ~ 2145756 (+)
LOC117598584 NA non-coding upstream 344928 1923984 ~ 1925704 (+)
G189293 NA non-coding upstream 382762 1887650 ~ 1887870 (+)
G189280 NA non-coding upstream 406980 1863202 ~ 1863652 (+)
G189245 NA non-coding upstream 494200 1775605 ~ 1776432 (+)
G189555 NA non-coding downstream 8032 2295086 ~ 2295305 (+)
G189563 NA non-coding downstream 21172 2308226 ~ 2309418 (+)
G189570 med24,LOC107716488,LOC107706820,LOC107660474,LOC107678252,LOC107560528 non-coding downstream 30264 2317318 ~ 2318307 (+)
G189626 NA non-coding downstream 304184 2591238 ~ 2609497 (+)
G189678 NA non-coding downstream 318829 2605883 ~ 2608078 (+)
LOC117598558 NA other upstream 318408 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 604819 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1296414 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1485641 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 2048213 137521 ~ 222419 (+)
pyyb NA other downstream 238002 2525056 ~ 2528820 (+)
G189864 NA other downstream 473639 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 683071 2970125 ~ 3021609 (+)
G190028 NA other downstream 951390 3238444 ~ 3239216 (+)
G190212 NA other downstream 1114213 3401267 ~ 3405009 (+)

Expression


Co-expression Network