patl2 (patl2)


Basic Information

Item Value
gene id patl2
gene name patl2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3212858 ~ 3221523 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947889.2
TGAGCTTTCCAACATGTcgtacagggaaaaaaaaaaaattggcggTTGGAGACTTTAGCAGCGTGACTTCACATATTTAAGCCAAATGAGTGACTCTGAGAACCCGGAGGAGAAGGGTGACTCTGTTCCCGAGGCCAGCTGGCCTGAAAATGGAGATCAGTGGAGCGatggagaagatggaggagaAATGGAAGAATCTGGGCTCATTCAAGAAATGGTGGAAGAAGATGAAGAGATTGACCTGTACAATGAAGAGACCTTTGGATTAGACCTAAATGCTGAGGATCTGGAGGCAGATCCTGTCGATCTTCTGTTAATGGAAGGAAACGAGTCCCCCTCACCCCGTCCTCCATCACCACACAAGCCCTCTCCTCCCAGCCCTAAAGCCGAAATCGAGCCCCAGGCTCCCGCGGGCCTGAGTGAAAAGTCCCGCAGCCGAAGGGAGCGAGTCGGTAAGGGGCAGCTGCTGGATGACCCAGCTGTGATGAGGACTGTGGAAGGTCCACCAAGTCTCAAGAGTTTGGACAGCGCTATTGTGGACTGTGGACGCAGTTCAGGCTGGGGAGATCTCAACGCAAACACGTGGATGATGTCACCTTACGGCCCAATGAGACAAACGCCTCTCTTACAAGACAAAGCCATTGTGCGAGTGATCGACAGGTCGTCTCGTGGAAGGCTGCAGTTTGCGTCTCCTACCTTGCGATCCCCGCTGCAGAGGGCTCTCCCTCAGCAGGCGCCTGTGTGTCCGGTGATGCCTAGATCTCCACTACGCCCTCAAAGTCCATTCTCAATTAAACAGCGTTACAACCAGcCAGGCGTTTATCTTTCACCCTCCACACCACGCTTCCACTCTCCCAAAATGATGCCGCTGCAGTTTGGACCAAACTCACCCCGGCCCGGGCCCTGCTTCAGCCCTTTACCCAGTCCCCTCCCTCAGAGATTCAGGTTCCCAGTCCTGGCGACCCAGCTCCATCCACAGCACAAGAGATTGCTGAGTCAGCGTCCTCAAGGCTTTCGGAGaaagCCAAAGGATTGGGATCATTATGCTGAGCTTATGTCAGCCAAAGAGAAGGAGTGGATCATTAAGTTGCAGATGATCCAGCTACAAAGTGAGAACCCGCATCAGGATGATTACTACTACCAGGAGTACTACCGGAGATTGGAGACCAAATTGGCTGAGGAAGAAATGCTGGGTGACCGCTCGAAGAGGGAACCACCCAAACTCACCACACCATACATCAACAAAACTGTATCATACACTCCAGTGGTTCATATCGAGGGCTCGCTGGGTCAAGTTGCCGTTTCTACGTGTTACTCACCACGTCGAGCCATTGATGCTGTCCATGGTCACACTGTGGAGGAACAGAAAGACATCAGACAGCAGAGACTTGAGGTGCTGAACACCATTGAGAAGTGCTACATCATTTTGCTGGGGGTGGAGGAAGCTGAGAGAATGAAGGCTAGCGTTTCGGATGAGGAGGAGAGGCAGAGAAGGCTAAAGACCATTCAGAGAGGAGTGGAGCAGATCAGCAGCCAGCTATGCAACCCCAACTCTTTggaGTCTGCAGAAGAGTTTCTACCATGCCTCTTGGTttcaaaagggaaaaaactgCTGGCAAGGCTCCTCCCATTTCTATCCCATGATGCGTCACTGCAGGTTCTGAGAGCTATCACAACACACCTGCCGGTGCTGATGAGCCGAGATGTAGATGAGGCTCTTCCTGTCCTCTACCCATCTCTCCGAGCTGTGATAGGCACATTGACATTCTCCCAGCTGGTCAGCATTCTCCAGGACTTCACCACACCTTTACCTGACTCCAAAGACTCGCGCTTAACGCTGGCCTGCCAAAATAAgtttggtcTGTCGTTGCTGTACGTGTTACTTTCCCAAGGTGAGAGACTCCTGACCTCCGACGTTCCCATGGAGCCAAGCATTGGCGATTTCGAGACCTGGACGGACACGGTTTTCCATGTGGCGCGGCAGCTGTCCCGCTCGTCCCTCATCGAACCGCTCTGCTTGCCCTCCAATCTGCTCACACTGTTCTGTCGCTATTTGGACAAACGCACTGTCCAGCAGCTCAAGAACAACATGGAgtcTTCAACTGGCTATCTGGCTGTAGGTTCCTGAGAGCAAATTtccttttgtttccttttttttttttttttttcttttttttttttttttttaagccccTCTGTAGACAAACTCCTCACATTCCTCATCAGCTCCTTCTGCTGCCAGCAGATGGTGATGCTCCACTTACCCACTAAACCACACATTAAACCTACATTTGCATAAATAGCCATGGGAAAAATGATTCAGCTCTGAGTGAAAAATATCAGGATGGATTTAAGTTTCACAAAAAGGCTCTTTTGGGTTCTTTCTTGAAGGGAAAAAGTTGCAAATGagccatttttctttaatttaggAGAGATTCATTTCCACATTTGTCATGTGTTTCCATCACTGTGCgaatgatcattttatttattgtatctttatttcatcacttAAGTGATATTTAAGCACTGTTGTATAGCAtctataaaatgcaaaaaaatgaataaatgcaa

Function

symbol description
patl2 Predicted to enable RNA binding activity. Predicted to be involved in P-body assembly and deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to be located in cytoplasm. Predicted to be active in P-body. Orthologous to human PATL2 (PAT1 homolog 2).

NR:

description
protein PAT1 homolog 2

GO: NA

KEGG:

id description
K24823 PATL2; protein PAT1 homolog 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947889.2 True 2574 mRNA 0.49 18 3212858 3221523

Neighbor

gene id symbol gene type direction distance location
cmn NA coding downstream 7179 3183070 ~ 3205679 (-)
LOC113547533 paqr4 coding downstream 32390 3176904 ~ 3180468 (-)
ppp1cab ppp1cab,LOC108274218,LOC108413689,LOC105894037,LOC107556769,LOC107674520 coding downstream 45067 3159988 ~ 3167791 (-)
atp2a1l atp2a1l,LOC108274121,LOC108411009,LOC107716472,LOC107653256 coding downstream 61402 3137134 ~ 3151456 (-)
LOC113547508 LOC108274004 coding downstream 94794 3107185 ~ 3118064 (-)
LOC113547516 tgfb1i1,tgfi1 coding upstream 907 3222430 ~ 3233921 (-)
LOC113547469 elob,tceb2,LOC102782282,LOC103367351,LOC100692966,LOC103036770,LOC108427344,LOC102795145 coding upstream 16896 3238419 ~ 3242643 (-)
LOC113547465 LOC108274351 coding upstream 57386 3278909 ~ 3321622 (-)
med1 med1 coding upstream 108503 3330026 ~ 3352549 (-)
neurod2 neurod2 coding upstream 171021 3392544 ~ 3396358 (-)
G190100 NA non-coding downstream 37223 3174077 ~ 3175635 (-)
G190099 NA non-coding downstream 38891 3173060 ~ 3173967 (-)
G190097 NA non-coding downstream 41287 3170883 ~ 3171571 (-)
G190094 NA non-coding downstream 56708 3155911 ~ 3156150 (-)
G190076 NA non-coding downstream 135568 3077031 ~ 3077290 (-)
G190188 NA non-coding upstream 127851 3349374 ~ 3349729 (-)
G190232 NA non-coding upstream 205913 3427436 ~ 3427644 (-)
G190304 NA non-coding upstream 275606 3497129 ~ 3497399 (-)
LOC117598465 NA non-coding upstream 314142 3535665 ~ 3536422 (-)
G190336 NA non-coding upstream 393897 3615420 ~ 3632422 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 357365 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 385106 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 401467 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 603085 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 1001879 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 1690211 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 1727640 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 1837975 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2263168 5484691 ~ 5490925 (-)
G191430 NA other upstream 2389597 5611120 ~ 5613954 (-)

Expression


Co-expression Network