LOC113547524 (gjd3)


Basic Information

Item Value
gene id LOC113547524
gene name gjd3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2361824 ~ 2363285 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947903.2
GCAGTTCGTTTGGAAAAACAACTACGACCAGGCTGCCGTATTCAGTTCTACTCCTGGAAGTATCCACGGACCTGTATGATCTTCTGTTGATGAAACGACTGAAAAACATCTTCAAGGACATGATTTCTGGAATATCAACTTTGTCAAGTAACTTCTTACCTCTGGAAGGCTTAATAGGACTGCATGGAGCTTCTCTCCAGCTGCATCACTTTGTTTCTTTCACCATATGATTTGTGGCAGTTTGCCAGACCTTGACCAGATCTTGGATGATCTTGACCAGAACAAACTGGTCTACTACACCACAGACTCATAAAGCTTTGGGAAGTCCCAAAAAACCTTTCGTTCCCACCCTCAACCATGGCTGACTGGGGTTTTCTCAGCGAACTGTTCAGCTCCCTGCAGGCACACTCACCCATGCTGGGTCGTCTCTGGCTGCTCCTCATGCTGGTCTTCAGGATGCTGATCCTCGGTACAGTGGCCAGCGACATGTTTGATGATGAGCAAGAGGAGTTTTCCTGCAACACCTTGCAGCCAGGATGCAAGCAAGTTTGCTACGACCGCGCCTTCCCTATCTCCCAGTATCGCTTCTGGGTCTTCCACATTGTGCTCATCTCCACCCCTGCTCTAGTGTTCCTCATGTATGCCATGCACCATCACAAGAAGCACCAGGTCCTCCCACAAGGCTCCACCATCAGCATTCTTGAAGCAAAGCAGGACCTCCACCTCAAGCGTCTCTACCTTATCAACGTGGCCTTTCGGATGGTGTCTGAGGTGGGGTTCCTGTTCGGACAGTGGAAGCTGTACGGCTTTCGTGTCGAGGCTCATTTCTCCTGCAGTCGCTTCCCTTGTCCCCACACTGTGGACTGTTTCACCTCCAGACCTATGGAGAAGACAGTCTTCTTGCTCTTCTACTTTGTCATCGGAGTTGTCTCGGCCATCTCCAGCCTGGCCGAATTCATTCACATCATCTTCAAGTGGTTCATGAAGAGCAGTGATGGGGTAAAGTCCTTGGTTTGGGAGAATATTGAATTTCAGGAAGAGGCTGGTAAGAAGTATTTGACCCAGCATGAGAACCACCAAGCAACTGCAGTGAAGCCAGGCAGAACCAGGGAAGTGCTGCAGTTCCCTGGAAGGACTGGTAGGACCGGTAGGTCAAGAACCAACACTGGCTCAAAGAAATCCAGTATCAGATGCAAGAGCCTTGGAGAAAACCGCTACCAGAAAAGTGCCGAACTGATAGTGTGAGGACCAAAATTTTCAAATGTTGTGGTGCATAAGTCTTTATTTGCTGCATTTACACATTCATATATTTGCctaagaattttaaataaagtcacaTGTGGCAAAAACAAATTTTGTCTGAATGTAACCATAGTGCAAATTGTGTATAATATTTACAACCCTTCAGTACATCAGCtagaattctgattggtcaggtgttgcttaaatatttatttttttt

Function

symbol description
gjd3 Predicted to enable gap junction channel activity involved in AV node cell-bundle of His cell electrical coupling. Involved in gap junction assembly. Located in cell surface. Part of connexin complex.

GO:

id name namespace
GO:0044425 obsolete membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005921 gap junction cellular_component

KEGG:

id description
K07627 GJD3, GJC1; gap junction delta-3 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947903.2 True 1462 mRNA 0.47 1 2361824 2363285

Neighbor

gene id symbol gene type direction distance location
samd14 NA coding downstream 16151 2335633 ~ 2345673 (-)
med24 med24,LOC107678252,LOC107660474,LOC107706820 coding downstream 27172 2308241 ~ 2334652 (-)
LOC117598634 NA coding downstream 92769 2245794 ~ 2269055 (-)
LOC117598663 NA coding downstream 116109 2243875 ~ 2245715 (-)
emc9 emc9 coding downstream 137524 2215401 ~ 2224300 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding upstream 220496 2583781 ~ 2590145 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding upstream 242748 2606033 ~ 2615766 (-)
slc4a1b LOC108273570,LOC108410807 coding upstream 255104 2618389 ~ 2638273 (-)
LOC113547505 NA coding upstream 368931 2732216 ~ 2745395 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding upstream 492951 2856236 ~ 2864989 (-)
G189547 NA non-coding downstream 81071 2280546 ~ 2280753 (-)
G189521 NA non-coding downstream 199253 2160630 ~ 2162571 (-)
G189512 NA non-coding downstream 214909 2146712 ~ 2146915 (-)
G189451 NA non-coding downstream 300559 2048830 ~ 2061265 (-)
G189412 NA non-coding downstream 371669 1989519 ~ 1990155 (-)
G189702 NA non-coding upstream 30741 2394026 ~ 2399476 (-)
G189717 NA non-coding upstream 239908 2603193 ~ 2604096 (-)
G189810 NA non-coding upstream 292018 2655303 ~ 2655507 (-)
G189855 NA non-coding upstream 331495 2694780 ~ 2701420 (-)
G189885 NA non-coding upstream 429542 2792827 ~ 2802964 (-)
LOC113547489 NA other downstream 150845 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 491831 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 588304 1760834 ~ 1773520 (-)
G189199 NA other downstream 790751 1568286 ~ 1571073 (-)
G189180 NA other downstream 796564 1564890 ~ 1565260 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 227952 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 422796 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 429761 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 488770 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2548449 4911734 ~ 4918977 (-)

Expression


Co-expression Network