ngfrb (LOC108273578)


Basic Information

Item Value
gene id ngfrb
gene name LOC108273578
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2656860 ~ 2697247 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947904.2
ggggaggagaggaggagagaaaagaggagtgCCGGATCATTTCCTCTCTATTCACTGCTCGGTCCCCTGAGCCGTCACTCCACTCGCTCTTCACTCCCTCACTCTTCTGTAACGAGCCCgtctcctctttctttctgtctgtctttctgcttttctctccctccttcttttcacttttggacATCAATGAGCGCGCGACTCGGAGCTCGCGGCCAGTGGAGAACTTAAGCCGGAGAGCGCGCGCTAACTAACACCGAAAAGAGCGTTTAAACATCGCAGTGATGCTCACTTCAGCACCTCACGTGCACCAGtgattcatcatcatcatcatcatcatcatcatctgtttTAATATCCTGAGAAGAGAAGAGTCCGCGTGCACTCAAAGAACTTAACAAACATGTACGCTGTAGTGCTCGCGGCAGTGTTTGGAGTGgtGAGCGTGTTCTCGGCTCAGAAAGTGTGTAACTCAGGACAGTACACCACCAGTGGAGAGTGCTGCAAACAGTGTCCACCAGGCGAAGGCGTGGTCCAGCCGTGTGGAGAGACGCAAACAGAGTGTCAGCCGTGCCTCGACAGTGAGACGTTCTCAGAGAACTTCAGCCACACGGAGAGATGCATGCCATGCACAGACTGCACTGGGTTGTTACGCATGGAGACGCCATGCACGGATGCCAACGACGCCACCTGTGTGTGCGACTATGGCTACTTCATGTCGCGCATAACGGGGCAGTGCCAGGCGTGCACGGCGTGTCCAGTGGGCAGCGGTGTGCTCAGGCGCTGCAACCCCGAGCAGGACACCGTATGCGAGACATGCATGGACGACACGTACTCAGACCAGGAGAGCGAGCTCAACCTGTGCTTGCCGTGCACCATCTGCGAGGATACGGAGGAGCTCCAGCACTGCACCGCTGTCAGCGACACCGTGTGCCAAGTGGACTCGAACCTTCTGAATACTTCAAGCACGCCGCTGTCTTCTCTGGAGCCGTCAGAGCTTCCGTTCGACTTCACCAACTTTCCACCGGAAGGGCTACCAGAATCCACAGAGAGCATGCCAACCACCGGCCCTGAACCCAAGAAACTGGGCCTGGGCTTGGGTGAAAATCTCATTCCCCTGTACGCCTCCATTGTACCTGCTGTGCTGCTCGGCCTCGTCGCCTTCATTGTCATCAAAAGGTGGAAGAGctgcaaacacaacaaacaagaAGGTAGTAATCGATCAGGTATGGAGAACCCGAGCCAGACGCCGTCGCCTGAGGGAGAAAAGCTGCACAGTGACAGTGGTATCTCTGTAGATAGCCAGAGTTTACAGGAGGGACAAGGCCTgccacacacagtggtGAAGATCGATGGAGGCCAGAGTTTGCCCCTGCATGCTCATGAAGAGCTGGAGAAGCTCCTGGACGATGAGGGACCACTGGAAAACGACTGGTCCAGCCTGGCTGGTTTGCTCGGGTACGAAGAAGAGCGCATCGCCTCTTTCAGCCAGGAGGAGAGGCCAGTCCGAGCGCTGCTGAGTGACTGGGCGAGCCGTGACTCTGCCAGTGTTGACGTGCTGTGCGCTGCACTGAGGAAGATCAACCGGGAAGATCTCGCTCAGAGCATCATGCCCAAGTCCACGGCTACCTCCGTCGTGTGAGGAAACGCACACTTCTGCTCATCAAGCCATAGCCCCTGCTTACACAACACAACCACACGCTACACTAGTGTATTACATGGTCCAGTCATGCTCATTTCAAATGTTAATGCCACCAAGCCTAAACGTCAGGTTGTCAGGTTTCGCATGTACCGTTCCTTTAGAACCAGCACGCCAACATGCATCGTTAGCACCGCCCAAGCCTCTGCGTTCACACAGCAATGATGCACCAAATTGAATCATTtcacagtttacagtttaaCATGAGACTTAATGGGAATGAGAATGGGAatatttcctgttttcctttTCCCCACTTGTTGCTCATGTATATTGATTGACGCTgtcacattttctcattttttctgtttatttctggcGCATACCCAAAATGGCCTAGtcgtaattatcacattaatccctgtgaatttggtttaattttacaatatggcttccaacctcattattcagcagctctAAAATAGCAATTGATGCAGcgcatcctattattttgcattttaatttgttatacTGCACACACAACATATGAAGACACAGCATACCAAGTTGAAGTGATGAAATCGCAGTTGAAATCGAAATATAATTCAGTAAGTTCTCTTGTAAAGTAAACGCGCCCATTGTCAAAAGGATAAACTAAAAAAGGATGCATACGTGTACAGTGTATTTTATCCATCAAAACAATTTCGCTCCTCGAGATAAGCTTCGGATTAAGATGAGCTTCTTTCAATCTCGATACTATTACCAAAGTGCACAATTTCGCTATTAGATCCTCACTACACACGCTTAACTCTAAATATGGCTCTCAGTGATTAGTTAACAGTAAAGGATTTCAAGGTTAAGCAAAAGCCTGGTGCTACAACGCTGAGTGATTGGCGATTTGGATAATATCAgactgaaaaaccaaaacaagcTGTGTGAACGCAGGGTGATTCCGTGCTTCGTCTTCTGTTTGTGAATCCACTCAGACAAAGCTTCAGGACATGAATCAGTCTATCCAATCCTGTCTGTACTGTAATGCAGTTATAATCTTTACCTCCGGTACACACGCTTCAGGTAATCAAAGTTCAATCGAATCTGTTGTTCTGTCTTCacttacagtaaaaaaaaaccaaaaaacataaCAAGGGTTGTACATTGTGTAAAATACGCCATAAATATGCAGTGTTGAAGAGTACGCAAGCGAATAACTAAAGCCATGCTCCAGAGGCTGAGAGACTGCTGGCACCACAAACTGCTTGGGACGAACTTCAAAGGAGAAAGTCGAGCCTCAGATATAGAGATTTATAGACGCTGTGgtgaaagaaggagagaaaaaaaataagaattttgCTAAGAATGTGCGCTAATGCTAACcgatttttttttgccaacactttgttgccatggtaacacttttttgttgccatggtaactaTAGTTTGCCattataactgttttttttttgccatggtAACCCTTTGCTGTCGTTTCACTTTTTGAGGGGATGGTAAACTCTTTGTTTCCGTAGCAACCCTGTTGCCATGATAACCTTGTTGTTAGGATacgtttttgttgctgttgtcacAATCATGttttgttgccatggtaactcTTTGTTACCATAGTAACCCTTTTGTCAGGATAGCATTGTTGTCGTGGTTCTTCTTTGTTGCTATGGTTGTCACAGTAACTTTTTTGTTGCTATGGTAATTTTTTGTTGTCATGATAACCTTTATGTTAACTTTTTTGTTGCCATGATAACTGTTTGTGCCAATGGTAGCTTttttgttgccatggtaactcTTTGTTGCTAGGAGCTTTATGATAATCCAACATGTTGCAGTGATAATTTCTACTAGCCAAAACATTGATAATAACTAACAAGCAtctattttcagttttcaggatttttttagtcattttgttggctttttttttgttcaaattgGTTTTTAGGTTTGAAGTGAAGCACAAAAAATTGAATGAACGGACAACAAAGTGTTGGTGTCATGGTGGTCCGGTTAAAACGCAGGGAAACTCAgtgtactgtttttttcttgaacAGGAAGGTAAGTTGATCCCAGTAGTTACCTGGCCAGGGTCATCACCATGAGAAAAGAACTCAGTCACACCGTCGTGACCTAGATCAggaatgacaaacacacactctggaaaaaaacaagcttacacacacacacacacacacacacacaaagcagccCGGTGCCCCATCTGAACAATTCAGGTTAACTAAAATCAAATGACTTAAATGAAGGCTGTAATAAGTGAGAGAAATAGGACACCACATAAACAGCACACAGTGACCGCTGCCTTAATACGAACCAGAAACAACAAAGAACGCAACATGCAAAGCATCACAGCACGTTCTTCCTTAGGTGTTCAGGCTGATCTGAAATTGAAATGCCGATCAGCTAAGACAGGTTAGGTGTGTGAAGTGTAGTTTGCTTCTTCATTTGTTGCACTGGAAACTACGATGCTCGTCATCACACTGTGTAAATCCTCCTACAGCGGCGTCACACCGGTCGGCTTTGTGGAGTTGTTCAGTGTCTCAGACAGAActgctgatgtggtttctgacacattattaaaagaataaacatggacagaaaaaaaaaaagttgctgaaCTAAAATTGCgaagctgaaacatattaatggGACGTCTAGATTTTGACCAGATTTAACGTAGATAGGCTTtttttgtccaaatatttacaaaagatGACTAACAAGACTAtaacataaatgtaatataagctcgcaaaaaatcttaaaaaaaaaacaaaacaaaaaaacactgtatttgAAAGTACCGTTAAACATTTAGTAGATTTA

Function

NR:

description
tumor necrosis factor receptor superfamily member 16-like

GO: NA

KEGG:

id description
K02583 NGFR, TNFRSF16, CD271; tumor necrosis factor receptor superfamily member 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947904.2 True 4491 mRNA 0.45 6 2656860 2697247

Neighbor

gene id symbol gene type direction distance location
mpp2b mpp2,LOC108273574,LOC108410806 coding upstream 82086 2531080 ~ 2574774 (+)
tut1 tut1 coding upstream 141606 2503394 ~ 2515254 (+)
mki67 NA coding upstream 154030 2489809 ~ 2502830 (+)
raraa raraa,rara,LOC108273576,LOC108410801,LOC107660476,LOC107678286,LOC107716487,LOC107745620 coding upstream 170064 2394076 ~ 2486796 (+)
top2a top2a,LOC107598028,LOC107660475 coding upstream 295765 2347045 ~ 2361095 (+)
LOC113547481 LOC108273850,LOC107735415 coding downstream 201642 2898889 ~ 2906026 (+)
LOC113547478 LOC108273849,LOC108443156 coding downstream 208907 2906154 ~ 2923348 (+)
LOC113547477 adprh,LOC108274007,LOC108411014,LOC108411010 coding downstream 379846 3077093 ~ 3082950 (+)
LOC113547472 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 396757 3094004 ~ 3099985 (+)
mto1 mto1 coding downstream 402957 3100204 ~ 3107200 (+)
LOC113547470 NA non-coding upstream 12676 2641841 ~ 2644184 (+)
G189684 NA non-coding upstream 41105 2614697 ~ 2615755 (+)
G189626 NA non-coding upstream 47363 2591238 ~ 2609497 (+)
G189678 NA non-coding upstream 48782 2605883 ~ 2608078 (+)
G189570 med24,LOC107716488,LOC107706820,LOC107660474,LOC107678252,LOC107560528 non-coding upstream 338553 2317318 ~ 2318307 (+)
G189916 NA non-coding downstream 176908 2874155 ~ 2875297 (+)
G189933 NA non-coding downstream 227967 2925214 ~ 2925571 (+)
G189934 LOC108273851 non-coding downstream 230554 2927801 ~ 2928169 (+)
G189940 NA non-coding downstream 233686 2930933 ~ 2931380 (+)
G189941 NA non-coding downstream 237108 2934355 ~ 2935400 (+)
pyyb NA other upstream 128040 2525056 ~ 2528820 (+)
LOC117598558 NA other upstream 704636 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 991047 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1682642 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1871869 725033 ~ 784991 (+)
G189864 NA other downstream 63446 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 272878 2970125 ~ 3021609 (+)
G190028 NA other downstream 541197 3238444 ~ 3239216 (+)
G190212 NA other downstream 704020 3401267 ~ 3405009 (+)
LOC113547484 LOC108273453 other downstream 733066 3430313 ~ 3453426 (+)

Expression


Co-expression Network