LOC113547531


Basic Information

Item Value
gene id LOC113547531
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2302233 ~ 2304287 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947910.2
CTTTAGATGGCCAGTATAGCTGACTGAAACTGTGAAGCAAGCTAAGCTAATATGTACTTCTATCTCGGTATGTACTTTGCTCTAAGCACTCTGGGAAGATTTGTGCTTTCAGCGCCGGTACCAGAGACTCAACACACCCTGGATGTAAAGGATATGGAGGTCATGAGAAGCTCTGAATTTCAGGACGCTGCAGAGAGCGCTCTCAGCTTGATCACGAAGATACTCAGTGATATTCCTGCCGTGCACAAATCACTGATCCACACTACGACGCTGTCTCTAGACGAGAGTGATTTGAGCACATTGCAGTTCCTCAAGGACTCTCTTGCTTTACCAGAACCAAGTCCTCTTCAGCCCCTCTCAGACAAGTTTAAACTGGACGTTTCCTTGGGCCGGATAGCTGAGGGTCTCAAGCTGCACAAGACTCTGTTGAAGGTGATCAGCGAGCTGGTGCACTTTAAACCCAAGAAGCTAAATGAATTCCTGTATGACCTGCGAGATTCACTGCTGCACGTCCACAAGATGCAGCATGTGATTAAGGCGGTGAATGGGCCAGAGAAGGTATCAGAAAGCCAACTGCAGGAGGATTTGGCTCCTAAACTGAAAAACGAATACGTGTCCCAGGTGGCAGCACATCTGGCCCTGATCCAGCTGAGACAGTTCGCCAAGGACGTTAGCCGTAGCCTTCAGAGCATGATCATCTCCCCGGTAGAACAAGAGACTCAAGATTCATAAATCCATGGAACCTAGTAACAAATGCTGTAATGAAAATATTAAGGTTTTTGTGGACAGTGTTGATGTACGTTACTACTGGCCTCCGCTTTTCAGGTGAATCATTTGTTTACATGATTTGTCAATATCCAGGAGCACATGGACTTAAACAATgcgaatatttatttatttattcatttatttatgtatttacgcCACACCCATCACCAAGCAGTAGTGAGCTCATGGTCATTTGCTCACCTTACTTGTTTTCCTTAGTAATTTTGTTGACTTGccatgtgatgatgatgatgatgatgatgatgatgttctttACTCACATCCTCATCACCACCACAACTAAGTTATGATCTACATTAGATctttattagatgtttattttgtttttcttttactatAGAGTATCTATGCTggaaatcattatttatttacgtgtatttataaaagcattttgtcattaatatatcgtatgtatttttttatttatataaaaacgcATGTGGTATAAAAGTTTTTAATGTCGCGTATTACAagaaatatcatatttattgGTTGCTTTTTTGGAAAAACAATTTCATTTCCTGTTAAGGGAaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947910.2 True 1323 mRNA 0.41 5 2302233 2304287

Neighbor

gene id symbol gene type direction distance location
lrrc3ca lrrc3c,lrrc3ca,LOC107598050,LOC107716457,LOC107660473,LOC107678436 coding upstream 15179 2270632 ~ 2287054 (+)
irf9 irf9 coding upstream 118035 2173539 ~ 2184198 (+)
lsm5 lsm5 coding upstream 136452 2163174 ~ 2165781 (+)
avl9 avl9 coding upstream 139660 2147896 ~ 2162573 (+)
kbtbd2 kbtbd2 coding upstream 159281 2135179 ~ 2142952 (+)
top2a top2a,LOC107598028,LOC107660475 coding downstream 42758 2347045 ~ 2361095 (+)
raraa raraa,rara,LOC108273576,LOC108410801,LOC107660476,LOC107678286,LOC107716487,LOC107745620 coding downstream 89789 2394076 ~ 2486796 (+)
mki67 NA coding downstream 185522 2489809 ~ 2502830 (+)
tut1 tut1 coding downstream 199107 2503394 ~ 2515254 (+)
mpp2b mpp2,LOC108273574,LOC108410806 coding downstream 226793 2531080 ~ 2574774 (+)
G189555 NA non-coding upstream 6928 2295086 ~ 2295305 (+)
G189477 NA non-coding upstream 156477 2143152 ~ 2145756 (+)
LOC117598584 NA non-coding upstream 376529 1923984 ~ 1925704 (+)
G189293 NA non-coding upstream 414363 1887650 ~ 1887870 (+)
G189280 NA non-coding upstream 438581 1863202 ~ 1863652 (+)
G189563 NA non-coding downstream 3939 2308226 ~ 2309418 (+)
G189570 med24,LOC107716488,LOC107706820,LOC107660474,LOC107678252,LOC107560528 non-coding downstream 13031 2317318 ~ 2318307 (+)
G189626 NA non-coding downstream 286951 2591238 ~ 2609497 (+)
G189678 NA non-coding downstream 301596 2605883 ~ 2608078 (+)
G189684 NA non-coding downstream 310410 2614697 ~ 2615755 (+)
LOC117598558 NA other upstream 350009 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 636420 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1328015 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1517242 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 2079814 137521 ~ 222419 (+)
pyyb NA other downstream 220769 2525056 ~ 2528820 (+)
G189864 NA other downstream 456406 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 665838 2970125 ~ 3021609 (+)
G190028 NA other downstream 934157 3238444 ~ 3239216 (+)
G190212 NA other downstream 1096980 3401267 ~ 3405009 (+)

Expression


Co-expression Network