pgap3 (pgap3,LOC103358570)


Basic Information

Item Value
gene id pgap3
gene name pgap3,LOC103358570
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2957439 ~ 2967729 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947911.2
TAAACTGTTGAGACTAACAGTACGGTTTCTAGTCGGCCATGATGGTACATTTGCCTAAACATTTGAATGAGTGAAGGTTTTGGTTGTACTGAAGAGGTTTATGAAGTTGAGGGATTTAGAGATTAGAGTTTAGGACACTGTTTTATTCAGGTGGTTATTTTACGAGTGTGGACGGAAAACTATaaatttagagagagagacagagagagagagagagagagagaggagacagtgaGAGTTTTACTTCCGGGTTTCTGTCAGCGCTGTCTGTAGCTAGCTCTCCGCGCGCGCCGCGTTTCCGCATACTTTCCAGCAGATTCACCTGCGCGTGTGCACGCTCAGATCAAACGCCCAGGTGTTTATAACAGCGCGAGCTGTCATGTCGCCGTAACTTCCGCTCGTTAACGTTCATCTCAGCTCCCATGACGTGACAGGGACGGATCGCTCTCTCGGTgcctgtagattttttttttttaaacatatatatatatatatatatatatatatctatatatacaccGTGTGGACACCATGATGGTTTGCTGCACGTCACTGGGTCTCGCGCTGTTCACCGCGCTGCTCCTGTGCACACCGGGTCGCGTGCACGGCTCTCAGGGCGATAAGGAGCCCGTGTACCGGGACTGCGTGAAGCAGTGCGCGCGCACCAACTGCACCGGCGCCAAACTGCGCGGCTTCCAGTCCGCTCAGCCGCCTTACATGGCGCTCACGGGTTGGACGTGTCGGGATGACTGTCGTTATCAGTGCATGTGGACCACAGTTGGACTTTATCAGGCCGAGGGCTATCGAGTGCCTCAGTTCCATGGCAAGTGGCCATTTGTGCGCTTCCTGTGTTTTGAGGAGCCGGCGTCAGCCCTGGCGTCGCTGCTCAACGGTCTGGCGTGTTTACTGATGCTGCTGCGCTACCGCAGCGCCGTCCCACGCCAGTGCCCCATGTACCACACCGTCACCGCCTTCTCACTGGTGTCACTGAATGCCTGGTTCTGGTCTACAGTATTTCACACCAGAGACACTTATCTAACCGAGAAGATGGACTATTTTTGTGCATCAGCGGTGATCCTCTACTCCATCTACCTGTGCTGCGTCagGACGCTGGGTTTGCGGCGGCCCGGCGTGTCCAGCATTGTTGGAGTTTTGCTCATCCTGGCCTTCACCTCCCACGTCTCCTATCTCACCTTTGTTAGCTTTGACTACGGCTACAACATGGCCGCCAACGCAACCATAGGCATGGTAAACCTGCTGTGGTGGCTCGGTTGGTGCTGGCAGAACCGGAGGACGTTGCTATACTGGTGGAAGTGCGGCgtggtggtggtgctgctgCATGGCCTGGCGCTGCTCGAACTCCTCGACTTCCCGCCGCTCTTCTGGGTGCTGGACGCTCACGCCGCCTGGCACCTGGGCACTGTCCCTGTCCACTTCCTTTTCTACAGtTTCCTCATAGACGACAGCCTCCACCTCCTCAACACAGAGAAGGCTGGAGTCAAGCTGGAATAGGAGGAGCCTTTCTCAGAGCCCCGCCCCCTCCTCTCCCATCCCTCCAGTCAGGACGAGTCTGTGAATTTCGAGTTTACGAATtgagtttacactttttaccACTCTGCTACGGACAGCTGTGAAGAGAGTTTCTTTTAGTTGCTTAGTTCACGCGTGTTtgatttttgtactttttttttttttttttacatttctcacCATGTTTTTGCCTTTACTGAGCTTTGCCTTGAGTAGAAGAGCTTAGATTGGAAACTTTATTGACATGGTTTGTTTAAGTGTTacccattattatttatatttcgTACAGAAATCTTAAAAATGGGGTAAATCAGAGAGGTCAGGAGTGTGACATGCTGTTAAATCTTCaactgccatttttttccctttagcATAACTTACACTGACATCATTTGAgacaaaattgcaaaaaaaaaaaaaaaagagagagaggatgaaggGCACTAACGTTTGCTAATATTTTCAATGTTAAGATTAGCGTTACAGCAATACTTGCGCCTGCATGCCGCCATCCACCAGCAGAGGGATATGGTTTTGAAATCCATGCTAGTGTTCGCCTGCATCCCAAAccatatactatactataaataGTACATCAGAACACTTTTACCTTAACATGGTATATCGCAATTTGATGTATAATGTTCCAGCATATCCCACTGCTCATGgttcagacctgccaacctttacgtCTTTTTTGCGTAGGAGCTCCGCATTTTAACGTGGAGTACACTGCTATGAGTTATCACTAAAAATACggcaaaagagcagtcttcttttttcctctgataaaaatggcagatgatTCCAATCGACATATGATTctgaaatgattgacagttgcgtaGATGGTTTGAACTTTACGATATTAACTGACGCCCCCTGGTAGCCTTGTATTGACAAGTGATTTGCGAAAGGACAATATCGAAGATGTTCTGCGTTTTTACCCCTCCCCTGACCGCTGGCGGGATCACGCGTTAGTCTTCTTCGCGACTGGCAGGTCTGATGATGTACTGTTTCGTCATTTATTTTGGGGTGCTAGATAGCTAAAGACATGTTCCTTagtaaatttttgttttttgagaaaCTAATGAAATGGCTAGGTGACACACCACCTGCGCTCTTCAATATCCGTACAGAAATCTCACAATTTAtagaataatttcattttattcagagAGGCCTTAGCATGGGTGCTGCTAAGATCTAGAATTACCGTAAATTTTCGTAAGGTGCCTCGTGGTGTAATACCAGTGCCCACCAGCAGAGGGAAATCATTATCGCACCAGCGAGTTGGCCCAACATTTTGGCCAATGTCCTAAACTGCGTAAACACGTCAAAATAGAACGTTAACATCAATAACATACTGTTTTGACACGTATTTTAGTGCAGTAGCGATGTAACGTTTTGTCCGAGTTTGTAGCAAGCAGAAAAAAttgttcgtttttttttctggatgcTAGTTGAAGCACCTTccaaaaaaatacaagaatgtAAATGCTAATATTGTTGAATTACGTGTGGACAAGAGATAGCCATTTTAGATTTGCGAGTGTTTGAACAAGACGTCCGACTCTTGATTGAGGGTGTGTGAAGGCCTGTGATTGTTTATTGTGCTCATTTACATATTGCACATTTACGTATTGATCAGTATGAGCGCAGTATTTAGGGATATTGAAgggtatcaaaaaaaaaaaaggctgataaTATCATGATACGACTCACAAATGATATGTTGGAGCAGCTGTAATgtttgctttgccttttatttttttcttttcactgctgctgtgtttgcttcttttatactgttgtgttcatttttttttttaaccacaaagtgtttttttcttacatttttattattgttttccaTTCAGGAAGTAATCTGAAGCATGTTTTTCACCTGGAATGCCTTGAGAGgaaaaaatggaagagtttgaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgttccacttaTGCCTTATTCCATCTTGTCCAGTATACAGTTATGTCTGTTGTCTTCACTGAAACTCCATTTCCATTGAACGATGTGAGTGCTTATTTGCTCCCTGGAGGATTAA

Function

symbol description
pgap3 Predicted to enable hydrolase activity, acting on ester bonds. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be intrinsic component of endoplasmic reticulum membrane. Orthologous to human PGAP3 (post-GPI attachment to proteins phospholipase 3).

NR:

description
post-GPI attachment to proteins factor 3

GO: NA

KEGG:

id description
K23553 PGAP3, PER1; post-GPI attachment to proteins factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947911.2 True 3617 mRNA 0.45 8 2957439 2967729

Neighbor

gene id symbol gene type direction distance location
erbb2 erbb2,LOC108273851 coding downstream 4535 2924595 ~ 2952904 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding downstream 61091 2874516 ~ 2896348 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding downstream 92450 2856236 ~ 2864989 (-)
LOC113547505 NA coding downstream 212044 2732216 ~ 2745395 (-)
slc4a1b LOC108273570,LOC108410807 coding downstream 319166 2618389 ~ 2638273 (-)
mylpfb mylpfb,LOC108274226,LOC107571443,LOC101482131,LOC107674915,LOC102196412,LOC108443170 coding upstream 3601 2971330 ~ 2975144 (-)
LOC113547471 LOC108274229 coding upstream 11577 2979306 ~ 2982750 (-)
LOC113547497 LOC108274228 coding upstream 17929 2985658 ~ 2989177 (-)
LOC113547499 LOC108274363 coding upstream 29237 2996966 ~ 2998281 (-)
LOC113547498 LOC108274359,LOC108274358,LOC108274122 coding upstream 40536 3008265 ~ 3020759 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding downstream 46184 2911012 ~ 2911255 (-)
G189882 NA non-coding downstream 129632 2796507 ~ 2827807 (-)
G189885 NA non-coding downstream 154475 2792827 ~ 2802964 (-)
G189855 NA non-coding downstream 256019 2694780 ~ 2701420 (-)
G189810 NA non-coding downstream 301932 2655303 ~ 2655507 (-)
G190076 NA non-coding upstream 109302 3077031 ~ 3077290 (-)
G190094 NA non-coding upstream 188182 3155911 ~ 3156150 (-)
G190097 NA non-coding upstream 203154 3170883 ~ 3171571 (-)
G190099 NA non-coding upstream 205331 3173060 ~ 3173967 (-)
G190100 NA non-coding upstream 206348 3174077 ~ 3175635 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 101946 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 129687 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 146048 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 347666 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 746460 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 1944005 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 1981434 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 2091769 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2516962 5484691 ~ 5490925 (-)
G191430 NA other upstream 2643391 5611120 ~ 5613954 (-)

Expression


Co-expression Network