LOC113547534 (LOC100305049,LOC107084780,LOC108411452,LOC105894045,LOC107567432,LOC107670912,LOC105890759)


Basic Information

Item Value
gene id LOC113547534
gene name LOC100305049,LOC107084780,LOC108411452,LOC105894045,LOC107567432,LOC107670912,LOC105890759
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3261534 ~ 3265222 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947915.2
GGGCCCATgctccttcctttctctctaaGATCTGCAGCCATGAGcaTGCTCAGGCTCCAGAAGCGCTTGGCCTCCAGCGTCTTGCGCTGTGGCAAAAAGAAGGTCTGGCTTGATCCCAATGAAACCAATGAGATCGCCAACGCCAACTCTCgtcaGGCAATCAGGAAGCTGGTGAAAGATGGTCTCATCATCAAGAAGCCCGTCACGGTGCACTCTCGCGCCCGCTGCCGCAAAAACACGCTGGCTCGCCGCAAGGGTCGCCACATGGGCATCGgtAAGAGGAAGGGTACAGCGAACGCTCGTATGCCCGAGAAGCTTTGCTGGATGCGCCGTATGCGAATTCTGCGCCGCCTGCTGCGTCGCTACAGGGAGTCCAAGAAGATCGACAGGCACATGTACCACAGCCTGTATCTGAGGGCTAAAGGTAATGTGTTCAAGAACAAGCGCATCCTCATGGAGCACATCCACAAGCTGAAGGCTGACCGAGCCCGCAAGAAGCTCCTCTCTGACCAGGCTGAGGCTCGTCGCTCAAAGACCCGTGAGGCACGTAAACGCCGTGAGGAGCGACTGCAAGCCAAGAAGGAAGAGATCATCAAGAACCTGTCCAAGGAGGAGGAGGGCAAGAAATAAACCTCCATACATTGTTTATTCTAATAAACCACCCACAAAAGTAAAACTCA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02885 RP-L19e, RPL19; large subunit ribosomal protein L19e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947915.2 True 680 mRNA 0.55 6 3261534 3265222

Neighbor

gene id symbol gene type direction distance location
LOC113547507 NA coding upstream 7732 3251702 ~ 3253802 (+)
pkmyt1 NA coding upstream 12310 3244122 ~ 3249224 (+)
pelo pelo,LOC107653258,LOC107674509 coding upstream 85882 3169668 ~ 3175652 (+)
sult1st6 LOC108274122,LOC108274358,LOC108274359,LOC108411008 coding upstream 125368 3129716 ~ 3136166 (+)
LOC113547522 LOC108274006 coding upstream 135010 3118494 ~ 3126524 (+)
LOC113547491 LOC108273563 coding downstream 150982 3416204 ~ 3417931 (+)
prdm9 LOC108274183 coding downstream 401931 3667153 ~ 3680599 (+)
pemt pemt coding downstream 466563 3731785 ~ 3772629 (+)
cops3 cops3 coding downstream 568884 3834106 ~ 3849629 (+)
usp22 LOC108274018,LOC108413479,LOC107726266,LOC107719913 coding downstream 585456 3850678 ~ 3885740 (+)
G190033 NA non-coding upstream 26924 3234389 ~ 3234610 (+)
G190027 NA non-coding upstream 39225 3221937 ~ 3222309 (+)
G189987 atp2a1l,LOC108274121,LOC108411009,LOC107653256,LOC102797408,LOC103152350,LOC106956261 non-coding upstream 110053 3062072 ~ 3151481 (+)
G189978 LOC107739129,LOC107675819,LOC107589765,LOC107719741 non-coding upstream 233173 3028130 ~ 3028361 (+)
G189970 NA non-coding upstream 266151 2993000 ~ 2995383 (+)
G190122 NA non-coding downstream 279 3265501 ~ 3265710 (+)
G190160 NA non-coding downstream 87436 3352658 ~ 3352920 (+)
G190170 NA non-coding downstream 101872 3367094 ~ 3367293 (+)
LOC117598604 NA non-coding downstream 211848 3477070 ~ 3482359 (+)
G190258 NA non-coding downstream 211849 3477071 ~ 3477663 (+)
G190028 NA other upstream 22318 3238444 ~ 3239216 (+)
LOC113547538 NA other upstream 239925 2970125 ~ 3021609 (+)
G189864 NA other upstream 500524 2760693 ~ 2761010 (+)
pyyb NA other upstream 732714 2525056 ~ 2528820 (+)
LOC117598558 NA other upstream 1309310 1937687 ~ 1952224 (+)
G190212 NA other downstream 136045 3401267 ~ 3405009 (+)
LOC113547484 LOC108273453 other downstream 165091 3430313 ~ 3453426 (+)
lmf1 lmf1,LOC107580192 other downstream 432572 3697794 ~ 3723243 (+)
rasd1 rasd1,LOC107653935,LOC107720458,LOC108412952 other downstream 515939 3781161 ~ 3783609 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other downstream 638125 3903347 ~ 3930443 (+)

Expression


Co-expression Network