mylpfb (mylpfb,LOC108274226,LOC107571443,LOC101482131,LOC107674915,LOC102196412,LOC108443170)


Basic Information

Item Value
gene id mylpfb
gene name mylpfb,LOC108274226,LOC107571443,LOC101482131,LOC107674915,LOC102196412,LOC108443170
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2971330 ~ 2975144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947919.2
CTATAGTTAGCTCTCCTGTGCTAGTATATAAGGCTCCATAGTGTCAAAATGTACATGTCGGTCAAGCGGACTTGGCGTAGGCTCTTGGCTCTTCTCCTGACCAACCCCAAAAACTCCATATAACTTCGAGAGATGGCACCCAAAAAGGCCAAGAGGAGGCAGCAGGGAGAGGGTGGCAGCTCcaatgtgttctccatgtttgaGCAGAGCCAGATCCAGGAGTACAAGGAGGCCTTCACCATCATCGACCAGAACAGAGACGGCATCATTAGCAAGGATGATCTGAGGGACGTGTTGGCCTCCATGGGTCAGCTGAACGTGAAGAACGAGGAGCTGGAAGCCATGATCAAGGAGGCCAGTGGTCCAATCAACTTCACCGTCTTCCTCACCATGTTTGGCGAAAAGCTGAAGGGTGCTGATCCCGAGGACGTCATTGTTAGCGCTTTCAAGGTCCTTGACCCCGAGGGTACCGGCTCCATCAAGAAGGATTTCCTTGAGGAGCTTCTGACCACCCAGTGCGACAGGTTCAGCGCAGAGGAGATGAAAAACCTGTGGGCCGCCTTCCCTCCAGATGTGGCTGGCAATGTCGACTACAAGAACATCTGCTACGTCATCACACAcggagaggagaaggaggaggagtaaACTCCTTTCCAGCTACTATTTATCTACCTCTTACCTCAACCCCCTCACATGTGGTTCCTTCACTGGTTCCTTCTTCTCTATGGCATGTTCAGGTTCCCTCCTTGAATGAATGTTCCTCTCGCTCACACGGCTGATAATAAAAGACTTTAACTCCATGGCTGAGATCCTGAACTGGAAGTCAGGATGGCTTTTGGAGGTGGTGGGAACATTTTCAGTAAACAATAATGCCGTGTCGTCAAACCACGCCATCTCACAATGttctctctgcttttctttgGTACACGTTTGTTTATTCTCACAACCTACAATAAAGAGCAGAGGAACACGCA

Function

symbol description
mylpfb Predicted to enable calcium ion binding activity. Is expressed in mesoderm; musculature system; myotome; and somite. Human ortholog(s) of this gene implicated in distal arthrogryposis type 1c. Orthologous to human MYLPF (myosin light chain, phosphorylatable, fast skeletal muscle).

NR:

description
sesquipedalian-1 isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12758 MYLPF; fast skeletal myosin light chain 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947919.2 True 974 mRNA 0.50 6 2971330 2975144

Neighbor

gene id symbol gene type direction distance location
pgap3 pgap3,LOC103358570 coding downstream 3601 2957439 ~ 2967729 (-)
erbb2 erbb2,LOC108273851 coding downstream 18426 2924595 ~ 2952904 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding downstream 74982 2874516 ~ 2896348 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding downstream 106341 2856236 ~ 2864989 (-)
LOC113547505 NA coding downstream 225935 2732216 ~ 2745395 (-)
LOC113547471 LOC108274229 coding upstream 4162 2979306 ~ 2982750 (-)
LOC113547497 LOC108274228 coding upstream 10514 2985658 ~ 2989177 (-)
LOC113547499 LOC108274363 coding upstream 21822 2996966 ~ 2998281 (-)
LOC113547498 LOC108274359,LOC108274358,LOC108274122 coding upstream 33121 3008265 ~ 3020759 (-)
LOC113547488 doc2a,LOC108274005,LOC108411015,LOC102798681 coding upstream 57904 3033048 ~ 3068141 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding downstream 60075 2911012 ~ 2911255 (-)
G189882 NA non-coding downstream 143523 2796507 ~ 2827807 (-)
G189885 NA non-coding downstream 168366 2792827 ~ 2802964 (-)
G189855 NA non-coding downstream 269910 2694780 ~ 2701420 (-)
G189810 NA non-coding downstream 315823 2655303 ~ 2655507 (-)
G190076 NA non-coding upstream 101887 3077031 ~ 3077290 (-)
G190094 NA non-coding upstream 180767 3155911 ~ 3156150 (-)
G190097 NA non-coding upstream 195739 3170883 ~ 3171571 (-)
G190099 NA non-coding upstream 197916 3173060 ~ 3173967 (-)
G190100 NA non-coding upstream 198933 3174077 ~ 3175635 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 115837 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 143578 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 159939 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 361557 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 760351 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 1936590 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 1974019 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 2084354 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2509547 5484691 ~ 5490925 (-)
G191430 NA other upstream 2635976 5611120 ~ 5613954 (-)

Expression


Co-expression Network