irf3 (LOC108273898)


Basic Information

Item Value
gene id irf3
gene name LOC108273898
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5866941 ~ 5882707 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309034.1
gtggaacgtcacagagagaagttagttcctgacCCTCCGGAAAAAAGGTGACGTTGGAACTCGAAAGCGAAACTGAGACGGATTTCCCGAGAACTGGCGGCTCGATTGCCAACTGTATCCCTGCTTACTAAACAAGCGCACTACACAGACCACATCATAACGGCTAAGTAGTGCCCTATCTGATAAAGCTATTTGTTACCCGGCCACAAGCTTCCTCGCTGAGTAAACCGGCTGAATTCCCCGTCTCTGCCTCGACACACAGGGGGAAGAGAAGCCTGTCAGCTTCAGCTCTTAAGGCGTTTTGTGTAACACACCTGCGATATCCATTACCCCTGATGAGATATTAACACGTGTTGTATCAGTGCTGATTTGTTGAGCTCGACACACTGCCCCAATGGCTCAGCCCAAACCACTCTTCATTCCCTGGTTGAAGCAGCAGATTGATAGTGGACGATACCCCGGCGTTCAGTGGGTCAACCAGGAACGCACAAAATTCAGCATTCCTTGGAAGCACGCTTTGAGGCAGGACTCCAACAGTGATGACATCCTTATATTCAAGGCATGGGCACAGACGAGTGCTGGCTCCAACGGCCAGATACCAGGTGACCACTCAGTGTGGAAAAGAAACTTCCGCAGTGCTCTCAGAGCCCGAGGCTTCAAGATAGTGGAAGATAACAAGAACGATACTGCTAACCCTCACAAAATCTTCATGTGGCCAGATGACTCACAGTCTGGGGCATCTACCACAGATTCACCAGTGTGTAATAGTGAAATTTCTCTTGGTGGTACCCTGTACCTGGGAGAAGACGAGTTGTTTCCGTGTGGAAGCCCGCAGCCTGATTTGTTGCAGCAGTGCCTTGCGGGTCTGAATATTGTTGAATCTCAACCAGAGATGCCTGTGGATCACGCAATGTTTGTGAGGGAACCAGTACAACATCCCATGAACGCGGCTATCTGTGACGCTCCATTTCCCATTCAGGAAACTTCAAACATGAGCCACTTTTCTCCAGGTGACGGCGCTATGGCTGGGGCAGGACAGATTTCTCCTGCTGAAGGCACATTGGCTCTGGACCAATATTCTCCACTAGAGAGCGCCTTCTTGGGCACACAGCAGCCCACGCCGCAGGCTGCTCCTGAGCCGGAAATGCCTGTTCACACCACTTCTAACGACTCAGGCTGTAACCAATTTGGGACCCATTTTCTGGTGAATGTTTATTACAGAGGGAGGCAGGTGTTAAATCAAATGGTGGAGAATGAGGCTGGTTTCTGCCTAGTGTTTAGGAAAGACCCTAGCCTAATGGCAAGCCCACTTCCTGTTGTGGAGCTCCCCGGCACAGAGTCTATACTGGACCAGACCCAGGCCCAGTCAACCCAGGAAATTTTGAATAATCTGGGTGGGTTGGTGGTGAAGCGGGAGGGCGGCATGCTGTTGGGATATCGTTGGGGAGACAGTCGTGTTTACTGGGGACTAGACAAACACGAGCAGAGACCCACAACCAGACCACTCTCCAAAAACAACCCTGAGCCCATCTATTCCCTTAAAGACTTTGTGTCAGGCATGATGGAGTTTATTCAGAACCGTGGACAGTCTCCTTCATACTCGCTCTATTTCTTTCTGGGACAACAGTGGCCCGACCCCAAGAACAAACCATGGGAGAAGAAGCTGATAATGGTAGAGGTGGTTCTCACTGCTCTGGAGAAGCTGAAGATGATGGCCGTGGCAAACGGTGCGTCCTCACTGCAGTCATCTATGGAATTGCAGATTTCCTTAGAGCAGATGATGGAAATGTGGTAGAAACGAATTCAGGTCAAATGGCTGGAACTTGGCGATAAACTGCACTCTGTATGAATGATTTGGTCTTAAATAGTTTGCTGCTTTTTTGGGGGGTTGGATAACAGGTAGGGTCTCTAAAAAAGACAttagatttaaaatgattttatacgTGATGCTCAAGTTCCTGGATAAATATAGTAAACAAAGGCAATAAAATGCATGTTGTTACTTGAAAGTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K05411 IRF3; interferon regulatory factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309034.1 True 2014 mRNA 0.49 11 5866941 5882707

Neighbor

gene id symbol gene type direction distance location
LOC113527265 LOC108274106,LOC108441156 coding downstream 17510 5817692 ~ 5849431 (-)
LOC113527266 LOC108441168 coding downstream 52469 5807820 ~ 5814472 (-)
zgc:92313 LOC108273548 coding downstream 157652 5692120 ~ 5709289 (-)
vkorc1 vkorl,LOC107719575,LOC107654009,LOC107598672,LOC108441164,LOC108413442 coding downstream 188980 5674724 ~ 5677961 (-)
aldoab aldoa,LOC107660454,LOC107708965,LOC107689930 coding downstream 247951 5614430 ~ 5618990 (-)
prr12a LOC108273897,LOC108441158,LOC107708947,LOC107664611,LOC107557376,LOC107654018 coding upstream 2798 5885505 ~ 5903485 (-)
si:ch211-255p10.4 LOC108273514,LOC108441159,LOC103358360,LOC103033508,LOC107598587,LOC107654020,LOC107557374 coding upstream 27727 5910434 ~ 5932525 (-)
mapta LOC108274153,LOC108441162,LOC103381620 coding upstream 87029 5969736 ~ 6000168 (-)
zgc:163073 NA coding upstream 123986 6006693 ~ 6011524 (-)
LOC117598564 LOC108273543,LOC108262318 coding upstream 209003 6091710 ~ 6097905 (-)
G191490 NA non-coding downstream 126742 5739978 ~ 5740199 (-)
G191468 NA non-coding downstream 177373 5688594 ~ 5689568 (-)
G191464 NA non-coding downstream 197188 5667884 ~ 5669753 (-)
G191463 NA non-coding downstream 199095 5666173 ~ 5667846 (-)
G191424 NA non-coding downstream 382274 5482620 ~ 5484667 (-)
LOC113527731 NA non-coding upstream 52832 5935539 ~ 5938213 (-)
G191762 NA non-coding upstream 335999 6218706 ~ 6219394 (-)
G191763 NA non-coding upstream 337105 6219812 ~ 6220381 (-)
G191772 kif22 non-coding upstream 368715 6251422 ~ 6252182 (-)
LOC117598466 NA non-coding upstream 377158 6259865 ~ 6261598 (-)
LOC113527291 LOC108274042 other downstream 75671 5768528 ~ 5791270 (-)
G191430 NA other downstream 252987 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 376016 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 803523 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 914082 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 664234 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1517293 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1698643 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1718511 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2964955 8847662 ~ 8857748 (-)

Expression


Co-expression Network