pagr1 (pagr1)


Basic Information

Item Value
gene id pagr1
gene name pagr1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4991942 ~ 4998332 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309046.1
CCGCCCTCGATGACGCAGACGGCGGGAGTCCAGCAGAGAAGTAAACAGTCAGTGTATCATTGATCAGTGTTAACAATGGAAAGCAGATGTTCTGCAGTAAACACGCTGTAAAGCTTCTGCACACTCCACATCAGCAGAACACGCAGGAGAATCTTCATGTGAGCTCGGTGTGATGCAGGCAGTGGAGGAAGCGGAGTCCTCGCTCTCAGACAGAGTGGAGGTGATGGGTGTGAGGGAGCAGGAGGACAAATCCACAGaagacacagaaaaagaaagagaagaggccACTAAAGCTGAGGACATGACAGAGGACGAAAAAGATgaggagaaagacaaagagtTTACAGAagcagacaaacagacagagggaACAAAGGAGGACGAAGACATGACCAACGGAGGCCAGACCCAGCAGGAGGAAGACGACTGGGAAATCCCGTACAGTGACGAGGAGCTGGAGGACCCTAAAAACTGGATGCCTCCACCTGAGGAGATCAAGCGCCTGTATGAGCTGCTGGCTAAAGGAGAAATGCTGGAGCTGAAGTGGATCCCTCTGCCTCGCAGAGCTCCAACTCCACCACGCACTCCTTCTccagagagagacggagagaactCGGACGAGGACAAacaggaggagagagtgagCGCAAGTAGGCCTCCCACACCCACTGAGTTTGATTTTGATGAAGAGCAAACCTCAGTGACTCCCAAGAATGCTTTCTTTGGCCGGCGCAGAACACCAGGCTCCTCTGCCCGTTCCACAGTGAAGCGAACAGCTCAGCTCGATAAGGTGCTCTCTGATATGAAGCGCCATCAAAAGCTCGAAGAGCAGATCCTCAGGACGGGTCGTGACCTTTTCAAAAGCGAAAAATCCACACAGCAGCGCTCATCTCCCAGCACTCAGCGGGaaagagacaaggagagagagagagacagcgaccCCAGCACCATCTTCAGTCCCAGACAGAGGAGATACTGAGTGAATATAGAGGAATCGGGACAAGTTTGGGTCACACCCTTATTTTGGGCCTATgatccatttcatttttaagaacAGATGATGacttgtttctttgtttattttgtgtgtgtgtgtgtgtgtgttttttttttttttttttggtttttttacaATCAGGTTTAAACACACTTGTGGATTTGAGTGATTCTGTTAACAAGAAATGTATGAAAGAGATACCAGGCTAAACATTATTCAGTTTAATAAATGTCTTATGTTGATGATA

Function

symbol description
pagr1 Predicted to enable estrogen receptor binding activity. Acts upstream of or within brain development. Predicted to be part of MLL3/4 complex. Is expressed in brain. Orthologous to human PAGR1 (PAXIP1 associated glutamate rich protein 1).

NR:

description
PAXIP1-associated glutamate-rich protein 1 isoform X1

GO:

id name namespace
GO:0007420 brain development biological_process

KEGG:

id description
K14973 PA1; PAXIP1-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309046.1 True 1244 mRNA 0.48 5 4991942 4998332

Neighbor

gene id symbol gene type direction distance location
trnap-agg_4 NA coding downstream 74055 4917816 ~ 4917887 (-)
trnap-ugg_13 NA coding downstream 76366 4915505 ~ 4915576 (-)
trnap-ugg_12 NA coding downstream 77556 4914316 ~ 4914386 (-)
trnap-ugg_11 NA coding downstream 78745 4913126 ~ 4913197 (-)
trnap-ugg_10 NA coding downstream 79934 4911938 ~ 4912008 (-)
g6pc3 g6pc3 coding upstream 257932 5256264 ~ 5265357 (-)
tmem101 tmem101 coding upstream 291380 5289712 ~ 5294398 (-)
trnai-uau_5 NA coding upstream 303781 5302113 ~ 5302205 (-)
LOC113527073 LOC108274342,LOC108274341 coding upstream 313912 5312244 ~ 5322475 (-)
sgca LOC108273949,LOC108444285 coding upstream 406850 5405182 ~ 5416607 (-)
G190885 NA non-coding downstream 241065 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 325371 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 395119 4596539 ~ 4596823 (-)
G190821 NA non-coding downstream 416412 4573682 ~ 4575530 (-)
G190742 NA non-coding downstream 703139 4288417 ~ 4288803 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding upstream 384663 5382995 ~ 5387137 (-)
G191413 NA non-coding upstream 444630 5442962 ~ 5445167 (-)
G191424 NA non-coding upstream 484288 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 667841 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 669552 5667884 ~ 5669753 (-)
G191056 taok2,LOC108273910 other downstream 39083 4949163 ~ 4952859 (-)
trnap-cgg_3 NA other downstream 72965 4911734 ~ 4918977 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2136449 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 2164190 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 2180551 2786081 ~ 2811391 (-)
LOC113527048 LOC108274181 other upstream 61166 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 486359 5484691 ~ 5490925 (-)
G191430 NA other upstream 612788 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 770196 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 1548609 6546941 ~ 6594390 (-)

Expression


Co-expression Network