LOC113527073 (LOC108274342,LOC108274341)


Basic Information

Item Value
gene id LOC113527073
gene name LOC108274342,LOC108274341
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5312244 ~ 5322475 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309110.1
CAGCGGGAACTGTACAGCTTTACTCATTCTGACTACAGCAGTTGTGTTGTTTCCTTCAGGATGTGgttgctggtggtggtggtgtgttttttggtttgggCTGTCGGTACTTACTGGTACCTCTTTGGCAAACCGAGCCCTTTCTCAGTGGAGTCAGTTAGACCTCCGGGTCCATTAGAGCTGGACCAGAAGAAGAGACACAAAATTCTGAAGCAAGGCTTCAGGAAAGAAAAGGTTCCCGAGAATCTGGATGCCATCGTGATTGGCAGTGGCATCGGTGGCATGACGGCAGCAGCTACACTGGCCAAACTGGGCAAGAGAGTGCTCGTGCTGGAGCAGCATGACCAGGCTGGAGGCTGCTGCCACACTTTCACTGAGAAAGGATTCGAGTTTGACGTAGGACTACATTACATTGGTCAGCTACATGAGAACAGTCTGTTTAAGATCGTCATGGACCAGATCACAGAAGGACAACTACAGTTTGTGGAACTGGACAAGCACATTGACACTATAGTGATAGGTAGAGGAGAGAAAAGCAGGAAGTACACAATCTACAGCGGCAAAACTGAGATGGAGGAGCATCTGAAGGAGCAGTTCCCTGATGATACCAAAGCTGTAGAGGAGTTCTTCAAGATCATGAAGaTGTCAGCCAGGAACACACATCTTTTGGCTGCACTAAAGCTGATTCCTCAGTGGGTGGCACTGTTCCTGCTTAAGAGTGGCATTGCCAACCTCTGCTCCTCCATCTTTCGCCTTGTAGGCACTAATGCCACTGCAGTTGCCGACAGTCTGACCTCCAACAAGGACCTCCACATAATCTTCTACTATCTTTTCTATGGTGAGACACTGCTTGCGCCTCCACCCAAAGAGTCCAGCTGTGTGATTAATGCTTTGCTGTTGCACCACTACAAGCGTGGAGCGTACTACCCAAAAGGTGGCGCCAGTGAAATCCCATTCCACATCACTAAGGTCATCCAGAAATTTGGTGGACGCGTGCTGGTCCGTGCTCCTGTAAATCGCATCCTGGTTGACAATAAGGGAGCTGCATATGGCGTCACTGTGAAACAAGACCAAGAGGATGTGGAAGTGCGGGCTCCTGTTATCATCTCCAACTGTGGAGTCTTCAGCACCTTCAAGAAACTTCTTCCATCACATATACAATCCAAACCAGAGATTCAGAAGCGGCTGAATATGATGAGACCTGGACGAGGATGCCTTTTAGTGTTCTCAGGTTTCGATGCCACACAGGAGGAACTGGGCATCAATTCTAACAACACGTGGCTCTTTAAGTCTAACGATATGGATGTCATGATGGATGAGTTCTTCAGTATGGGGAAGGACGAAGCTCCAGATAACGTTCCCATGATTCACTTTACGTTTCCATCTGCCAAAGATCCCACGTCGAAGATCCGTCACCCAGgTAAATCTTGCATGACCATTCTGACAGTGGTTAATTATGAATGGTTTGAAGAGTGGAAGGACACTCCAGTGAGAAAAAGAGGGGATGACTATTTAGCGTACAAGATGAGATTTGCCCACAATCTCTTTGACTGGGCCTGCAGCCAGTACCCCAAACTGAGAGACAAGCTGGTATATCAGGAGGTCTCCACTCCGttgtctaacacacactatcTTGGTCGTTACCTCGGAGCCATGTACTCAGCTGAGCACAACTTGGAGCGCTTCCAAGCAGAAGCCATCGCCAGAAATCGTTGTGATACCCCTGTCAAAAATCTCTTCATTTCAGGTCAGGATGTGTTTAGCTGTGGTATTGAAGGTGCATTACACGGTGGCCTTCTCTGTGCCTCCACGGTGCTCAAACACATTGTGTACATCGACCTCTTGATGCTAAAGAAGAAACTGAAGAGGAAGAAGGCGAGGGAAACTGCTGAACGGGTCAAAAAGCTGCTGTGAATCAGAGGGAAAATCTACAGCAGCTGACGGAAGCAATGACCTGCTAATTAGTGGCACaaatgaatttgtttattttacatagCCAATCAGCATTTTATCTTTATTACAAAAGGCTTAGTCCAAGTTGGGAAATATGCAAACTTCAGGTCAGAAGTCAGAAGAGAAAAGTCATATTCATGGTAAAATTACATcctgcaataaaataattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309110.1 True 2124 mRNA 0.47 11 5312244 5322475

Neighbor

gene id symbol gene type direction distance location
trnai-uau_5 NA coding downstream 10039 5302113 ~ 5302205 (-)
tmem101 tmem101 coding downstream 17846 5289712 ~ 5294398 (-)
g6pc3 g6pc3 coding downstream 46887 5256264 ~ 5265357 (-)
pagr1 pagr1 coding downstream 313912 4991942 ~ 4998332 (-)
trnap-agg_4 NA coding downstream 394357 4917816 ~ 4917887 (-)
sgca LOC108273949,LOC108444285 coding upstream 82707 5405182 ~ 5416607 (-)
lrrc45 lrrc45,LOC107736618 coding upstream 123997 5446472 ~ 5456359 (-)
trnav-uac_7 NA coding upstream 150923 5473398 ~ 5473470 (-)
prodh2 prodh2,zgc:92040 coding upstream 179948 5502423 ~ 5509397 (-)
eif3c LOC100304733,LOC107693689,LOC107708970,LOC107562013,LOC107689927,LOC107571764 coding upstream 190292 5512767 ~ 5526387 (-)
G190885 NA non-coding downstream 561367 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 645673 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 715421 4596539 ~ 4596823 (-)
G190821 NA non-coding downstream 736714 4573682 ~ 4575530 (-)
G190742 NA non-coding downstream 1023441 4288417 ~ 4288803 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding upstream 60520 5382995 ~ 5387137 (-)
G191413 NA non-coding upstream 120487 5442962 ~ 5445167 (-)
G191424 NA non-coding upstream 160145 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 343698 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 345409 5667884 ~ 5669753 (-)
LOC113527048 LOC108274181 other downstream 248826 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 359385 4949163 ~ 4952859 (-)
trnap-cgg_3 NA other downstream 393267 4911734 ~ 4918977 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2456751 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 2484492 2793046 ~ 2827752 (-)
gdpd3b gdpd3 other upstream 162216 5484691 ~ 5490925 (-)
G191430 NA other upstream 288645 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 446053 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 1224466 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 2077525 7400000 ~ 7418378 (-)

Expression


Co-expression Network