LOC117598474 (LOC108262318,LOC108273543)


Basic Information

Item Value
gene id LOC117598474
gene name LOC108262318,LOC108273543
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6101081 ~ 6102526 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309116.1
GAAAGTGAAATTTCGACTCGTAGAACTTTCCTTACATTGCACATCTCACTTTTTGCCTATAAATACTAAGTATTAACAGTGCACAAGATGGTAATAGTAAAGTGGAGAGCACTTCACACTCTGATTAGGAGTAACAGTCTGCTATACACGAAAGTAGAGTGTGTAAACTGGGAATACAATGTTTCTACGTTTAGTGCACCTTTGTGTCATTTTGACTCTGTGCAGTGTGAGCTCTGGCTTCAGCTGCCGATGGATCAATCTTAGATTCAAGCAGCACCATGCGACATGTTTAGCACTGCTTAGAGAAATGGGAGAGGAAATCAGCGTCAATGCCTCCATCCCGGATAACTGGCATCACTGGTTCTTTAACCAAAGCTATTCTCAgCCAGAGAAACAGATCTGGTTCATCGTTCAGACTCTGGATGAGGTCTCTCGTTTATTGGAAGATTCAGACTCTGTCTCCTGGAACAAGGACAAGCTGGAAACTTTCTTACATATGCTGGATCTGCAGGCCAACGGACTACGCTCATGTCTtgagcacaaaatgaaaaagaacaaaagattGCCCTTATACTTCAAACAACTAAGAGATCTCACCAAGAACGACAAGCAGGAGAAGAACGAGGCATGGGAGTGGATCAGAAAAGAGCTGCTTCAACTCTTCGGGCTGTTGGACTTTTTCCCTGCTGTCTCTGTGAATCGTCCTGAAAATGACAACTAATAATCAGTTGAAATCTTGCAGTGGTGACCagtaggttgtgagttcaaatcccagaaccaCCATAGAAAAGCTGTTGGCTGTTGTGAAAGACTCTTAAAGGCTTCAAgttatattaattattcagtttTGCTCTATTCATAGTACGCAAAATTAGCAGTGTATTTCTGTTTCATCCCACATTTTCAACTGTTACATGATGTTTACTCatggtatttatttaattttaatgaaatctgttatt

Function

GO:

id name namespace
GO:0051607 defense response to virus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309116.1 True 962 mRNA 0.41 5 6101081 6102526

Neighbor

gene id symbol gene type direction distance location
LOC117598564 LOC108273543,LOC108262318 coding downstream 3176 6091710 ~ 6097905 (-)
zgc:163073 NA coding downstream 89557 6006693 ~ 6011524 (-)
mapta LOC108274153,LOC108441162,LOC103381620 coding downstream 100913 5969736 ~ 6000168 (-)
si:ch211-255p10.4 LOC108273514,LOC108441159,LOC103358360,LOC103033508,LOC107598587,LOC107654020,LOC107557374 coding downstream 168556 5910434 ~ 5932525 (-)
prr12a LOC108273897,LOC108441158,LOC107708947,LOC107664611,LOC107557376,LOC107654018 coding downstream 197596 5885505 ~ 5903485 (-)
LOC117598565 LOC108262318,LOC108273543 coding upstream 6455 6108981 ~ 6110127 (-)
LOC117598661 NA coding upstream 26581 6129107 ~ 6135120 (-)
LOC117598586 LOC108262318,LOC108273543 coding upstream 51264 6153790 ~ 6154882 (-)
LOC117598588 LOC108273543,LOC108262318 coding upstream 60538 6163064 ~ 6164934 (-)
rbp4 rbp4 coding upstream 166347 6268873 ~ 6270634 (-)
LOC113527731 NA non-coding downstream 162868 5935539 ~ 5938213 (-)
G191490 NA non-coding downstream 360882 5739978 ~ 5740199 (-)
G191468 NA non-coding downstream 411513 5688594 ~ 5689568 (-)
G191464 NA non-coding downstream 431328 5667884 ~ 5669753 (-)
G191463 NA non-coding downstream 433235 5666173 ~ 5667846 (-)
G191762 NA non-coding upstream 116180 6218706 ~ 6219394 (-)
G191763 NA non-coding upstream 117286 6219812 ~ 6220381 (-)
G191772 kif22 non-coding upstream 148896 6251422 ~ 6252182 (-)
LOC117598466 NA non-coding upstream 157339 6259865 ~ 6261598 (-)
G191786 NA non-coding upstream 187885 6290411 ~ 6290912 (-)
LOC113527291 LOC108274042 other downstream 309811 5768528 ~ 5791270 (-)
G191430 NA other downstream 487127 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 610156 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1037663 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 1148222 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 444415 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1297474 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1478824 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1498692 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2745136 8847662 ~ 8857748 (-)

Expression


Co-expression Network