LOC113536897


Basic Information

Item Value
gene id LOC113536897
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14641 ~ 71157 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309126.1
TGATCCGTGATCTGAAAAGTTAACGTGGAAGTGGAATCGTTCCGCAGTTTTTCTCTTCACAGACATGGAGACTGCTCTAATGAGGTGCTTTTATGTGTTGCTGTCGGTGGTCATCTGTCACGgGTTCCATGTCCATGGTCCATCTGATCCTCTCATTGTCCATCTGGGAGGCTCAGTGATGCTGCCCTGCTTTGTAGAACCTCCTCTACCAATGGAAGAACTGGAAGTGGAGTGGAAAAGAAACGACTCTGAAACTCTAGTGCACTTGTGGCAGGACGGAGAGAGTCGACCAGAGTCTCAGAACCAGCGTTATCATGAAAGAGCTCATTTCTTCACTGAGGAGATCGCTCATGGaaacttctctctcttccttacAAATGTGACCCATGAAGATGCAGGAGTTTATAAGTGTGCTGTTTACACAAACCTGGACTCTAATGAAACTCTGATTGAAATAAAGGAGATTGAGCGCTTGATCGTATCTGGAGGTCACATCATATCTGCTTATGCAGGTGAAGATGTCACTCTGAACTGCTTTGTAGACTCACATGTCCCACCGGAAAATATAGAAGAGGTGTCGTGGAAGAAAATGGATGAAGATATCTTTGTGCTGCTCTATCAGGAGAGTGAGGTTCTGACAGAGACCACCcatgagagatacagagacagagtcGAGTTCTTCAGGGCTGAAGAAAGGAACAAAGGAAACTTCTCAATGATACTGAAGAGTGTTCGAACTGATGACAAAGGGCTGTATATATGTTTAGCATTCTCTGGGGCATTATCAGATAATACAACTGTGGAAGTGCAGCAGCTGGGTTTTTCCTCTATACATATTggaatttttgttttatgtatacTTGGATTTGTAATTGGATCACTTATCCTAGGCTACCTAtcttttacatgttttaaaaataatgctgacAGCAGAAGAGCCCTAGCTATACAGTGTGCACATGTCCTTTGTCCTAATATTACTATGTCTATTGTCTTCATCCTTTGGGGTGTTACTGAGGATTATCCCCACCAATTAATTAACTTCCTGGCAATTCCACTACAATATGCTGTGATAAATGTTGTTGCTTATTCACCTATTATTGTGGATGTCTGGTTTAAAACAGACACTGTAGGAAAAGTGGCAATTCTGGTAGGTCTGCTACTGGGGCCATTTCTGACTCTTCTATATGTTATTGATATAGTATGCTGTAGAAGGAatctacaaaaacaaacagacaggaTTTACGTAACTACAGAATCCAGCAATTGCCCACGAATATTTgctattatattaatatatggaCTTGATCCAAaaaatataaCTATGCCAGTATTTCCACTTTTGGCATTGATTTGGTTTTTTTGTCATGCTGTTCGCAAACGGCTGTttttaGTCTGGATATCAATGATGATGATCCTGGAGGTTCTAAGTGCATCAGGGTCAATCTACATCCATTATTTAGCGAATAATATGAAAGAACGTGACGCATTGACCTGTGTGACTGCATTCCTCCACATCTTGACCGTGATGATACTGTTTACAAGTGGAAAGCGTTTATCAGAATCTGACTCCAGAAACACTGGGACACAGCGATCTTTATCCCATTTGGTTGTGTTCGTGTTTGGTACAGCGGTGGTTGTTTTTGTGAATGCTGTTGCGTTATTAGTAGAGCTGATCCTAAAATCAAGAAATGGCCAGCGTACAGTGGATCTGCGAGTTATTCTCCTTCCAACTGAATGTGTCTTTGCTGTGTGCTGCCTTGCTTTACAACTGTCTGCTTTCTGGCAGAAGAACAGAGAaagATTTAGAGAAGACATAAAGAGGCTGCGAGGATTGTGTGGGTGTAAACAGACACTGACGAACTCACCAGAAAATCGTGAACATGAACTTGAGAATTTAGCTCCTGCATCTCAGCCCTCAGGGTCTTAGCAGtaaaaattcctcaAACACCAACCCAGAAGATTGCCAAAGTACATTTATCTGCTTTCTTTACCTTTCCGACTTGCTGGGATTTTTCCGTCACCTGACTTTTTGCCACAGCGCCCACTAGTGACTGTTTTAGTTGATTAGTCTATGCAACACTGAGCATAAAACGATCTGACTTCTGGCTGtgatatacagtcatgggaaaaagaaagtaaaccctccttcaattctatgttttttatttatcagcgcctaaataacaattgtgtggtcctcactaACTTCTATAAACCAAATAACTGCAggtgagagaaaagaaaaaaaacaagattgtGCCAGATGTGACTAACAAAATGAGTTAATCATAAAGAAGTGTGACTACATCTGTAAAAgtagaacttttggcagtttggtgttctggagcactcaggtgtgtatctacatcatgccaagaagagaGGACATCAGCCTTGACCTGAATAGACTGGATACACTGGTTTGATCACCTCAAGGATTGTTTTAAAGATACTTGTAACGTGTTatattcatgtcttttttttttatacaatcctttgtgtgatatttaaatgtgaatttcTTGTTTCATGTCTGCTCCTCTTGTAGTTTTAATTATCTAATTACCAAGATATTATGACTGGATTTATTAATTCATTGATGAGAGATATTATAGGATATAGATTAGAATTTAAAATCTATCTGGcattaaagacatttattttattgtcacCTGCAAAATTCACCTGAATTTGAAGCGCAATAGTCTGATATTAGAAAGCCGTATATAAATATCCAGGGATAAcaacactatttatttattgcatcttTGAGAGCTCagagtttatatttaaatcagaTTACATATTATGTACGTATTGCACTTAAAAAGTGATGCTTGAAAGGTactataagtaaaaaaaaatgtatatcttTAATTGTGTATAATATTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309126.1 True 2896 mRNA 0.39 18 14641 71157

Neighbor

gene id symbol gene type direction distance location
LOC113536986 LOC108273772,LOC108273771 coding downstream 12553 83710 ~ 105920 (+)
LOC113535310 NA coding downstream 50110 121267 ~ 125839 (+)
LOC113535195 LOC108273631 coding downstream 63080 134237 ~ 136788 (+)
si:ch211-207i20.2 LOC108274000 coding downstream 68702 139859 ~ 151454 (+)
LOC117598554 NA coding downstream 203224 274381 ~ 275446 (+)
LOC113537089 NA non-coding upstream 6126 8047 ~ 8515 (+)
G188466 NA non-coding downstream 86355 157512 ~ 182875 (+)
LOC113535322 NA non-coding downstream 172766 243923 ~ 254748 (+)
G188605 NA non-coding downstream 437873 509030 ~ 511976 (+)
G188681 NA non-coding downstream 563243 634400 ~ 634983 (+)
G188694 NA non-coding downstream 621802 692959 ~ 694469 (+)
ccser2b ccser2 other downstream 66364 137521 ~ 222419 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other downstream 653876 725033 ~ 784991 (+)
LOC113535146 LOC108261429 other downstream 886375 957532 ~ 974218 (+)
LOC117598477 NA other downstream 1496359 1567516 ~ 1665813 (+)
LOC117598558 NA other downstream 1866530 1937687 ~ 1952224 (+)

Expression


Co-expression Network