samd14


Basic Information

Item Value
gene id samd14
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2335633 ~ 2345673 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309127.1
GGCTTTGGGTGTGAACAGAGCTGTTGTCCTGAACCCTGATGCTCCTCTTGTCTCCGAGAGTGTGTGTCcatacacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgatagGGAATTAATGAATCAGTCTGAGATCTAATCAGCATGTCAGGCATATGAGCAACTCTGTGGGACAGCGCTTCTAACCAGAGtctgcaGATAACATCGCCATGTCCTCCACCCCACTGGCCGAGACGGAAGAAGATGTGTTTGATTTGACAGACGCAGTGCCTGAGACTGAGCGACTGGACAGCAGCCTACAGAAAGCTAAAGCTCAGCTGTCTATCAAAACCAGGAGGCACCGCCCCTCAAGGTCCCGTCTCCGAGACAGTCTGAGCTCCACAGAGGGAGAAGACAGCCTTGatggaaagAGCTACAGTGGCCTGTTGTCTGGCTCCTGCTCTCCTCTCCATGTGTCCCTACTCTGCCCCTCCCCCTTCTCTGACCTCCatccttcctcctctcctgcAAGGAAGGACCGAGCCTTCACCTTTGAGACAGCTGAGAgcgaaaagaaagaacaaagacGAAGGAGTGCATGCTTGCTGAATCCCTCCTCTCCAACCCACCTGCTCAAGGGGAACCATCTCCAGCAGCGCCAGGAGGACCACGCCCATATTGGCCACAGGGACCATCTCCAGCAGCACCTGGAGGACAGTTCGCAACTGGGGGATCATCTGAATCTGCACCACAAAGAGAAATCCCACCTACAGCACAGGGACCATCCCCAACTGTGCCAGGAGGACCACACTGACCTGCACCAGGGTGACCATCTCCCACTGCACCAGGAGGACCGCACCCACCTGCGCCAGAGGGACCACACCCACCTGCGACAGGGTGACCTCATCCACCTGCACCAGAGGGACTACACTGACCATCACCAGAAGGACCAAACCCACCTACACCAGAGGGACCATCAAAAGAAGGACAAAACCCATGTGCGTGAGAAAGACCATCACCAGAAGGACCAAACCTACCTACACAAGAGGGACCACCTCCAGAAGGACGAAACCCATGTGCGTGAGAAAGACCATCACCAGAAGGACCAAACCTACCTACACAAGAGGGACCACCTCCAGAAGGACCAAACCCATGTGCGTGAGAAAGACCATCTCCAGAAGGACCAAACCCACCTGCACCAGAGGGACCATCACCAGAAGGACAAAACCCATGTGCGTGAGAAAGACCATCACCAGAAGGACCAAACCTACCTGCACCAGAGGGACCACCTCCAGAAGGACCAGACCCATGTGCGTGAGAAGGACCAAGTCCAGCTACTTGAGGAGAATCATTCTCCCCTGTGCCAGCGGGAATACTCTCAGAGTGAAGatgacagTCGTGATATTGGTTCAGATGAGCCGAGCAGCCCGACAGTCCTGCTGGACAAGAAGACCAGGAGGCGTTTCCTCGATCTCGGGGTCACTTTGCGTCGCACATACGGGAAGGTCAGGAGGGAGCGAGCCAACAGACACGCCGCAGAAACCCGGGAGCCCGACGGAGCAGGAAGCCGTTCCTCGCGTTCCTCTGGTCCCCCGTTTGTAGCCTTCTCCTGGTTGAGCGAGAGAATAAGAGGCTCCGTTTCTCCGAAGAACTCCAGCCAATCCCCATCCAAGTCTTTATCTGAGGACGAGGAGTTGAAAAACGACAGCAGGTCCAGCAGGAATGAATCGTCGCAGCCGTATCAGAGCCTTTCCGATCACTCCGATGAGggacgTGATGAGCTCCGCGTTGTGAAAAAGAAGACCATCCTGCCGTTCTCGTCGGGCGGAAGAGACAGGACGGAGAAGCAGAACGGCGTCCAGAGGGACAAGAAGGACAACGGACAGGATGGAGACGGCCAAAAACTACTGACCTCTCAATCACAGTGCAAGAGTTTTGATTGATGAATAAATTCttcctatatatatacatattttttttctttttcagctgtAAATACTGTAGGCCCTGATATTATTGTAACTTATTCAGACAGcttaataaaaattttgaaaa
>XM_034309128.1
GGCTTTGGGTGTGAACAGAGCTGTTGTCCTGAACCCTGATGCTCCTCTTGTCTCCGAGAGTGTGTGTCcatacacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgatagGGAATTAATGAATCAGTCTGAGATCTAATCAGCATGTCAGGCATATGAGCAACTCTGTGGGACAGCGCTTCTAACCAGAGtctgcaGATAACATCGCCATGTCCTCCACCCCACTGGCCGAGACGGAAGAAGATGTGTTTGATTTGACAGACGCAGTGCCTGAGACTGAGCGACTGGACAGCAGCCTACAGAAAGCTAAAGCTCAGCTGTCTATCAAAACCAGGAGGCACCGCCCCTCAAGGTCCCGTCTCCGAGACAGTCTGAGCTCCACAGAGGGAGAAGACAGCCTTGatggaaagAGCTACAGTGGCCTGTTGTCTGGCTCCTGCTCTCCTCTCCATGTGTCCCTACTCTGCCCCTCCCCCTTCTCTGACCTCCatccttcctcctctcctgcAAGGAAGGACCGAGCCTTCACCTTTGAGACAGCTGAGAgcgaaaagaaagaacaaagacGAAGGAGTGCATGCTTGCTGAATCCCTCCTCTCCAACCCACCTGCTCAAGGGGAACCATCTCCAGCAGCGCCAGGAGGACCACGCCCATATTGGCCACAGGGACCATCTCCAGCAGCACCTGGAGGACAGTTCGCAACTGGGGGATCATCTGAATCTGCACCACAAAGAGAAATCCCACCTACAGCACAGGGACCATCCCCAACTGTGCCAGGAGGACCACACTGACCTGCACCAGGGTGACCATCTCCCACTGCACCAGGAGGACCGCACCCACCTGCGCCAGAGGGACCACACCCACCTGCGACAGGGTGACCTCATCCACCTGCACCAGAGGGACTACACTGACCATCACCAGAAGGACCAAACCCACCTACACCAGAGGGACCATCAAAAGAAGGACAAAACCCATGTGCGTGAGAAAGACCATCACCAGAAGGACCAAACCTACCTACACAAGAGGGACCACCTCCAGAAGGACGAAACCCATGTGCGTGAGAAAGACCATCACCAGAAGGACCAAACCTACCTGCACCAGAGGGACCATCACCAGAAGGACAAAACCCATGTGCGTGAGAAAGACCATCACCAGAAGGACCAAACCTACCTGCACCAGAGGGACCACCTCCAGAAGGACCAGACCCATGTGCGTGAGAAGGACCAAGTCCAGCTACTTGAGGAGAATCATTCTCCCCTGTGCCAGCGGGAATACTCTCAGAGTGAAGatgacagTCGTGATATTGGTTCAGATGAGCCGAGCAGCCCGACAGTCCTGCTGGACAAGAAGACCAGGAGGCGTTTCCTCGATCTCGGGGTCACTTTGCGTCGCACATACGGGAAGGTCAGGAGGGAGCGAGCCAACAGACACGCCGCAGAAACCCGGGAGCCCGACGGAGCAGGAAGCCGTTCCTCGCGTTCCTCTGGTCCCCCGTTTGTAGCCTTCTCCTGGTTGAGCGAGAGAATAAGAGGCTCCGTTTCTCCGAAGAACTCCAGCCAATCCCCATCCAAGTCTTTATCTGAGGACGAGGAGTTGAAAAACGACAGCAGGTCCAGCAGGAATGAATCGTCGCAGCCGTATCAGAGCCTTTCCGATCACTCCGATGAGggacgTGATGAGCTCCGCGTTGTGAAAAAGAAGACCATCCTGCCGTTCTCGTCGGGCGGAAGAGACAGGACGGAGAAGCAGAACGGCGTCCAGAGGGACAAGAAGGACAACGGACAGGATGGAGACGGCCAAAAACTACTGACCTCTCAATCACAGTGCAAGAGTTTTGATTGATGAATAAATTCttcctatatatatacatattttttttctttttcagctgtAAATACTGTAGGCCCTGATATTATTGTAACTTATTCAGACAGcttaataaaaattttgaaaaa

Function

NR:

description
PREDICTED: sterile alpha motif domain-containing protein 14-like

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309127.1 True 2059 mRNA 0.53 10 2335634 2345673
XM_034309128.1 False 1982 mRNA 0.53 10 2335633 2345673

Neighbor

gene id symbol gene type direction distance location
med24 med24,LOC107678252,LOC107660474,LOC107706820 coding downstream 981 2308241 ~ 2334652 (-)
LOC117598634 NA coding downstream 66578 2245794 ~ 2269055 (-)
LOC117598663 NA coding downstream 89918 2243875 ~ 2245715 (-)
emc9 emc9 coding downstream 111333 2215401 ~ 2224300 (-)
psme2 psme2,LOC107556770,LOC107674582,LOC107716467,LOC107653260,LOC107727955 coding downstream 163942 2166426 ~ 2171691 (-)
LOC113547524 gjd3 coding upstream 16151 2361824 ~ 2363285 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding upstream 238108 2583781 ~ 2590145 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding upstream 260360 2606033 ~ 2615766 (-)
slc4a1b LOC108273570,LOC108410807 coding upstream 272716 2618389 ~ 2638273 (-)
LOC113547505 NA coding upstream 386543 2732216 ~ 2745395 (-)
G189547 NA non-coding downstream 54880 2280546 ~ 2280753 (-)
G189521 NA non-coding downstream 173062 2160630 ~ 2162571 (-)
G189512 NA non-coding downstream 188718 2146712 ~ 2146915 (-)
G189451 NA non-coding downstream 274368 2048830 ~ 2061265 (-)
G189412 NA non-coding downstream 345478 1989519 ~ 1990155 (-)
G189702 NA non-coding upstream 48353 2394026 ~ 2399476 (-)
G189717 NA non-coding upstream 257520 2603193 ~ 2604096 (-)
G189810 NA non-coding upstream 309630 2655303 ~ 2655507 (-)
G189855 NA non-coding upstream 349107 2694780 ~ 2701420 (-)
G189885 NA non-coding upstream 447154 2792827 ~ 2802964 (-)
LOC113547489 NA other downstream 124654 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 465640 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 562113 1760834 ~ 1773520 (-)
G189199 NA other downstream 764560 1568286 ~ 1571073 (-)
G189180 NA other downstream 770373 1564890 ~ 1565260 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 245564 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 440408 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 447373 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 506382 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2566061 4911734 ~ 4918977 (-)

Expression


Co-expression Network