uros (uros)


Basic Information

Item Value
gene id uros
gene name uros
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 24047563 ~ 24064984 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309130.1
TCCTTGTTGGGTTTTTTAAGATAAGCGTCTCATCcggaagaaaaactatttcatgaaataaaattacGGTTTATTTTAGAACACATTTATATGAtgcttatataataataaatgttgataacttatttaaagaattttaattGCATAAATATATCTTGCAACGTGTAAGTTCACGAAAACCGAGCTTTAATTTTGAAGCACAGGTCATTTGGTGCTCTGTTACTTTACAGAtgggaagaaaataaaaacaaacccagCACTGGagTAGCTACAGGTGACAGAATGAAGGTGCTGGTGCTAAAGGAACCCAGAGAGAATGATAGTGGAGCAGATCCATACATCAAGgagCTGGCAGCGTGTGGACACTCGGCGACACTCGTCCCCGTCCTGGCGTTTCAGTTTGTCTCTCTGGATCGTCTGTCAGATCGGctgtttGATCCGGACAGGCACGGGGGGCTCGTGTTCACCAGTCCTAGAGCGGTCGAGGCTGTGAGACGGTGCATTGAGAGCAGTACACACAGAGaagAGTGGAACACGGTGAAAGAACAGTGGAACGCAAAATCTGTGTATGTGGTGGGGAAAGCGACGGCGTCATTAGttgagGCTCTGGGTCTGAAGCCCCTCGGCGAACACACAGGCACGGCTGACGTTCTGTCTCAACTCGTCATTGagagaGAAAACTCCACGTCTCTGCCTCTGTTCTTTCCCTGCGGCTCTCTGAAGAGAGAAGTGCTGCCTACCACACTGAGACAACACGGTATTTCTCTGGAGACACTAACAGTCTATGAGACGGCTGAACATCCGGACCTGgagaaaaacatcacacactacttCAGCGAGCAGggagtGCCAGCCAGCGTTGCATTCTTCAGTCCTTCTGGAGTGAAGTTTTGTCTGGAGCTGGTAAAGAAGCTGGCTGGAGAAAAACTGGACCAGATCAAGttcGCCGCTATCGGTCCCACCACGGCCGAGGCTCTACAGGAAGCGGGTGTGAGCGTCAGCTGCTCGGCTCAGAAACCCACACCGCAGCATCTCGCCACAGCCATCACACACAGCCTGAGcgatgacctctgaccccaggCACAGTCCGTCCAGACACCTGAGCCATCACGCCCAAAGCTGAAAGatatactataatattaaaCGTTGAAATTGTAGCGTAACACGTCATATTATTCTGTTTACTACAGTGGAATGTGGTttaggacagaaaaaaaatgtatttcaagAGAATTATTAGTCTGTTAAAGCATAAATGAGACACTTTAAAGCCAAGAAAGATCACACAATTTAGACAATATTCAACAAACGTTGCGAATCAGTTGTAAGCTATACCGAACACACACCACTATTTtatttgtgaagtcttgccatttTTTCATCTTAATTTCAGAATTGCactaaatacagaaatgtaacTGGAGGACTGGAAGACAGAGAAACCAATATACAACAttgatttatataaaatttaagaTCACAAAAACAGCCCGAAATTGTTTGTATTTTAGTGCATATTTTActgaacatttttataatttgttaCAGTTGATACCCTGTGATACCTCCATGCATTTTTACAATAGAatgaatgttttctgtatttcattTCTCTGCTGTTAGTTTGATTTTCATCGCGACTCGAGTATTTGATGCACTGAAATGAGTCACTGGGTTACAGCAAATAATtaggaatgtgtgtgaatgagtgttaaGTTCTGTTTGAgatgaaaatgcaaataaaggacagtttatattttca
>XM_034309131.1
gtatattttatatatttattgatgtGTTATATCATGTTCTGAGTTTAAATATTGTCTAAgatgagagaaggagaaagtgtAAAGGCATAATAAATATCCCTCGTTTGTGATGATCAGGAACtgcagTAGCTACAGGTGACAGAATGAAGGTGCTGGTGCTAAAGGAACCCAGAGAGAATGATAGTGGAGCAGATCCATACATCAAGgagCTGGCAGCGTGTGGACACTCGGCGACACTCGTCCCCGTCCTGGCGTTTCAGTTTGTCTCTCTGGATCGTCTGTCAGATCGGctgtttGATCCGGACAGGCACGGGGGGCTCGTGTTCACCAGTCCTAGAGCGGTCGAGGCTGTGAGACGGTGCATTGAGAGCAGTACACACAGAGaagAGTGGAACACGGTGAAAGAACAGTGGAACGCAAAATCTGTGTATGTGGTGGGGAAAGCGACGGCGTCATTAGttgagGCTCTGGGTCTGAAGCCCCTCGGCGAACACACAGGCACGGCTGACGTTCTGTCTCAACTCGTCATTGagagaGAAAACTCCACGTCTCTGCCTCTGTTCTTTCCCTGCGGCTCTCTGAAGAGAGAAGTGCTGCCTACCACACTGAGACAACACGGTATTTCTCTGGAGACACTAACAGTCTATGAGACGGCTGAACATCCGGACCTGgagaaaaacatcacacactacttCAGCGAGCAGggagtGCCAGCCAGCGTTGCATTCTTCAGTCCTTCTGGAGTGAAGTTTTGTCTGGAGCTGGTAAAGAAGCTGGCTGGAGAAAAACTGGACCAGATCAAGttcGCCGCTATCGGTCCCACCACGGCCGAGGCTCTACAGGAAGCGGGTGTGAGCGTCAGCTGCTCGGCTCAGAAACCCACACCGCAGCATCTCGCCACAGCCATCACACACAGCCTGAGcgatgacctctgaccccaggCACAGTCCGTCCAGACACCTGAGCCATCACGCCCAAAGCTGAAAGatatactataatattaaaCGTTGAAATTGTAGCGTAACACGTCATATTATTCTGTTTACTACAGTGGAATGTGGTttaggacagaaaaaaaatgtatttcaagAGAATTATTAGTCTGTTAAAGCATAAATGAGACACTTTAAAGCCAAGAAAGATCACACAATTTAGACAATATTCAACAAACGTTGCGAATCAGTTGTAAGCTATACCGAACACACACCACTATTTtatttgtgaagtcttgccatttTTTCATCTTAATTTCAGAATTGCactaaatacagaaatgtaacTGGAGGACTGGAAGACAGAGAAACCAATATACAACAttgatttatataaaatttaagaTCACAAAAACAGCCCGAAATTGTTTGTATTTTAGTGCATATTTTActgaacatttttataatttgttaCAGTTGATACCCTGTGATACCTCCATGCATTTTTACAATAGAatgaatgttttctgtatttcattTCTCTGCTGTTAGTTTGATTTTCATCGCGACTCGAGTATTTGATGCACTGAAATGAGTCACTGGGTTACAGCAAATAATtaggaatgtgtgtgaatgagtgttaaGTTCTGTTTGAgatgaaaatgcaaataaaggacagtttatattttca
>XM_034309132.1
TTCCTTGTTGGGTTTTTTAAGATAAGCGTCTCATCcggaagaaaaactatttcatgaaataaaattacGGTTTATTTTAGAACACATTTATATGAtgcttatataataataaatgttgataacttatttaaagaattttaattGCATAAATATATCTTGCAACGTGTAAGTTCACGAAAACCGAGCTTTAATTTTGAAGCACAGGTCATTTGGTGCTCTGTTACTTTACAGAtgggaagaaaataaaaacaaacccagCACTGGagCTACAGGTGACAGAATGAAGGTGCTGGTGCTAAAGGAACCCAGAGAGAATGATAGTGGAGCAGATCCATACATCAAGgagCTGGCAGCGTGTGGACACTCGGCGACACTCGTCCCCGTCCTGGCGTTTCAGTTTGTCTCTCTGGATCGTCTGTCAGATCGGctgtttGATCCGGACAGGCACGGGGGGCTCGTGTTCACCAGTCCTAGAGCGGTCGAGGCTGTGAGACGGTGCATTGAGAGCAGTACACACAGAGaagAGTGGAACACGGTGAAAGAACAGTGGAACGCAAAATCTGTGTATGTGGTGGGGAAAGCGACGGCGTCATTAGttgagGCTCTGGGTCTGAAGCCCCTCGGCGAACACACAGGCACGGCTGACGTTCTGTCTCAACTCGTCATTGagagaGAAAACTCCACGTCTCTGCCTCTGTTCTTTCCCTGCGGCTCTCTGAAGAGAGAAGTGCTGCCTACCACACTGAGACAACACGGTATTTCTCTGGAGACACTAACAGTCTATGAGACGGCTGAACATCCGGACCTGgagaaaaacatcacacactacttCAGCGAGCAGggagtGCCAGCCAGCGTTGCATTCTTCAGTCCTTCTGGAGTGAAGTTTTGTCTGGAGCTGGTAAAGAAGCTGGCTGGAGAAAAACTGGACCAGATCAAGttcGCCGCTATCGGTCCCACCACGGCCGAGGCTCTACAGGAAGCGGGTGTGAGCGTCAGCTGCTCGGCTCAGAAACCCACACCGCAGCATCTCGCCACAGCCATCACACACAGCCTGAGcgatgacctctgaccccaggCACAGTCCGTCCAGACACCTGAGCCATCACGCCCAAAGCTGAAAGatatactataatattaaaCGTTGAAATTGTAGCGTAACACGTCATATTATTCTGTTTACTACAGTGGAATGTGGTttaggacagaaaaaaaatgtatttcaagAGAATTATTAGTCTGTTAAAGCATAAATGAGACACTTTAAAGCCAAGAAAGATCACACAATTTAGACAATATTCAACAAACGTTGCGAATCAGTTGTAAGCTATACCGAACACACACCACTATTTtatttgtgaagtcttgccatttTTTCATCTTAATTTCAGAATTGCactaaatacagaaatgtaacTGGAGGACTGGAAGACAGAGAAACCAATATACAACAttgatttatataaaatttaagaTCACAAAAACAGCCCGAAATTGTTTGTATTTTAGTGCATATTTTActgaacatttttataatttgttaCAGTTGATACCCTGTGATACCTCCATGCATTTTTACAATAGAatgaatgttttctgtatttcattTCTCTGCTGTTAGTTTGATTTTCATCGCGACTCGAGTATTTGATGCACTGAAATGAGTCACTGGGTTACAGCAAATAATtaggaatgtgtgtgaatgagtgttaaGTTCTGTTTGAgatgaaaatgcaaataaaggacagtttatattttca
>XM_034309133.1
GCTCACTCGCCCCAGGTCACTGATCCATCAACCCGCAGTCAGATACGTCACGGACTGGCACCAGCACACACCCAGCGGTTAGCTACAGGTGACAGAATGAAGGTGCTGGTGCTAAAGGAACCCAGAGAGAATGATAGTGGAGCAGATCCATACATCAAGgagCTGGCAGCGTGTGGACACTCGGCGACACTCGTCCCCGTCCTGGCGTTTCAGTTTGTCTCTCTGGATCGTCTGTCAGATCGGctgtttGATCCGGACAGGCACGGGGGGCTCGTGTTCACCAGTCCTAGAGCGGTCGAGGCTGTGAGACGGTGCATTGAGAGCAGTACACACAGAGaagAGTGGAACACGGTGAAAGAACAGTGGAACGCAAAATCTGTGTATGTGGTGGGGAAAGCGACGGCGTCATTAGttgagGCTCTGGGTCTGAAGCCCCTCGGCGAACACACAGGCACGGCTGACGTTCTGTCTCAACTCGTCATTGagagaGAAAACTCCACGTCTCTGCCTCTGTTCTTTCCCTGCGGCTCTCTGAAGAGAGAAGTGCTGCCTACCACACTGAGACAACACGGTATTTCTCTGGAGACACTAACAGTCTATGAGACGGCTGAACATCCGGACCTGgagaaaaacatcacacactacttCAGCGAGCAGggagtGCCAGCCAGCGTTGCATTCTTCAGTCCTTCTGGAGTGAAGTTTTGTCTGGAGCTGGTAAAGAAGCTGGCTGGAGAAAAACTGGACCAGATCAAGttcGCCGCTATCGGTCCCACCACGGCCGAGGCTCTACAGGAAGCGGGTGTGAGCGTCAGCTGCTCGGCTCAGAAACCCACACCGCAGCATCTCGCCACAGCCATCACACACAGCCTGAGcgatgacctctgaccccaggCACAGTCCGTCCAGACACCTGAGCCATCACGCCCAAAGCTGAAAGatatactataatattaaaCGTTGAAATTGTAGCGTAACACGTCATATTATTCTGTTTACTACAGTGGAATGTGGTttaggacagaaaaaaaatgtatttcaagAGAATTATTAGTCTGTTAAAGCATAAATGAGACACTTTAAAGCCAAGAAAGATCACACAATTTAGACAATATTCAACAAACGTTGCGAATCAGTTGTAAGCTATACCGAACACACACCACTATTTtatttgtgaagtcttgccatttTTTCATCTTAATTTCAGAATTGCactaaatacagaaatgtaacTGGAGGACTGGAAGACAGAGAAACCAATATACAACAttgatttatataaaatttaagaTCACAAAAACAGCCCGAAATTGTTTGTATTTTAGTGCATATTTTActgaacatttttataatttgttaCAGTTGATACCCTGTGATACCTCCATGCATTTTTACAATAGAatgaatgttttctgtatttcattTCTCTGCTGTTAGTTTGATTTTCATCGCGACTCGAGTATTTGATGCACTGAAATGAGTCACTGGGTTACAGCAAATAATtaggaatgtgtgtgaatgagtgttaaGTTCTGTTTGAgatgaaaatgcaaataaaggacagtttatattttca
>XM_034309134.1
tGTTATATCATGTTCTGAGTTTAAATATTGTCTAAgatgagagaaggagaaagtgtAAAGGCATAATAAATATCCCTCGTTTGTGATGATCAGGAACtgcagCTACAGGTGACAGAATGAAGGTGCTGGTGCTAAAGGAACCCAGAGAGAATGATAGTGGAGCAGATCCATACATCAAGgagCTGGCAGCGTGTGGACACTCGGCGACACTCGTCCCCGTCCTGGCGTTTCAGTTTGTCTCTCTGGATCGTCTGTCAGATCGGctgtttGATCCGGACAGGCACGGGGGGCTCGTGTTCACCAGTCCTAGAGCGGTCGAGGCTGTGAGACGGTGCATTGAGAGCAGTACACACAGAGaagAGTGGAACACGGTGAAAGAACAGTGGAACGCAAAATCTGTGTATGTGGTGGGGAAAGCGACGGCGTCATTAGttgagGCTCTGGGTCTGAAGCCCCTCGGCGAACACACAGGCACGGCTGACGTTCTGTCTCAACTCGTCATTGagagaGAAAACTCCACGTCTCTGCCTCTGTTCTTTCCCTGCGGCTCTCTGAAGAGAGAAGTGCTGCCTACCACACTGAGACAACACGGTATTTCTCTGGAGACACTAACAGTCTATGAGACGGCTGAACATCCGGACCTGgagaaaaacatcacacactacttCAGCGAGCAGggagtGCCAGCCAGCGTTGCATTCTTCAGTCCTTCTGGAGTGAAGTTTTGTCTGGAGCTGGTAAAGAAGCTGGCTGGAGAAAAACTGGACCAGATCAAGttcGCCGCTATCGGTCCCACCACGGCCGAGGCTCTACAGGAAGCGGGTGTGAGCGTCAGCTGCTCGGCTCAGAAACCCACACCGCAGCATCTCGCCACAGCCATCACACACAGCCTGAGcgatgacctctgaccccaggCACAGTCCGTCCAGACACCTGAGCCATCACGCCCAAAGCTGAAAGatatactataatattaaaCGTTGAAATTGTAGCGTAACACGTCATATTATTCTGTTTACTACAGTGGAATGTGGTttaggacagaaaaaaaatgtatttcaagAGAATTATTAGTCTGTTAAAGCATAAATGAGACACTTTAAAGCCAAGAAAGATCACACAATTTAGACAATATTCAACAAACGTTGCGAATCAGTTGTAAGCTATACCGAACACACACCACTATTTtatttgtgaagtcttgccatttTTTCATCTTAATTTCAGAATTGCactaaatacagaaatgtaacTGGAGGACTGGAAGACAGAGAAACCAATATACAACAttgatttatataaaatttaagaTCACAAAAACAGCCCGAAATTGTTTGTATTTTAGTGCATATTTTActgaacatttttataatttgttaCAGTTGATACCCTGTGATACCTCCATGCATTTTTACAATAGAatgaatgttttctgtatttcattTCTCTGCTGTTAGTTTGATTTTCATCGCGACTCGAGTATTTGATGCACTGAAATGAGTCACTGGGTTACAGCAAATAATtaggaatgtgtgtgaatgagtgttaaGTTCTGTTTGAgatgaaaatgcaaataaaggacagtttatattttca

Function

symbol description
uros Predicted to enable uroporphyrinogen-III synthase activity. Predicted to be involved in heme biosynthetic process and uroporphyrinogen III biosynthetic process. Predicted to act upstream of or within tetrapyrrole biosynthetic process. Is expressed in hematopoietic system; mesoderm; and notochord. Human ortholog(s) of this gene implicated in cutaneous porphyria. Orthologous to human UROS (uroporphyrinogen III synthase).

NR:

description
uroporphyrinogen-III synthase-like isoform X4

GO: NA

KEGG:

id description
K01719 hemD, UROS; uroporphyrinogen-III synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309130.1 True 1762 mRNA 0.43 10 24050995 24064984
XM_034309131.1 False 1623 mRNA 0.44 10 24051260 24064984
XM_034309132.1 False 1760 mRNA 0.43 10 24050994 24064984
XM_034309133.1 False 1576 mRNA 0.46 10 24047563 24064984
XM_034309134.1 False 1596 mRNA 0.44 10 24051284 24064984

Neighbor

gene id symbol gene type direction distance location
ablim2 ablim2 coding upstream 447431 23541024 ~ 23600132 (+)
si:dkey-219e21.4 LOC108273735 coding upstream 575334 23466357 ~ 23472229 (+)
mfsd8 mfsd8 coding upstream 588058 23447143 ~ 23459505 (+)
si:dkey-219e21.2 LOC108273732 coding upstream 610838 23426875 ~ 23436725 (+)
capgb capg,capgb,LOC107556576,LOC107665882,LOC107657288,LOC107733451,LOC108430072 coding upstream 627499 23402183 ~ 23420064 (+)
mmp21 mmp21 coding downstream 2555 24067539 ~ 24080612 (+)
ctbp2l ctbp2,LOC105926449,LOC107387783,LOC106955101,LOC103481571 coding downstream 67922 24132906 ~ 24235084 (+)
hpdl hpdl coding downstream 202294 24267278 ~ 24273823 (+)
fam53b fam53b coding downstream 220097 24285081 ~ 24323614 (+)
oat oat,LOC107569518,LOC107684577 coding downstream 315317 24380301 ~ 24398447 (+)
G201753 LOC108274257 non-coding upstream 4320 24038938 ~ 24043243 (+)
G201604 NA non-coding upstream 186587 23775381 ~ 23860976 (+)
G201600 NA non-coding upstream 284297 23763065 ~ 23763266 (+)
G201297 NA non-coding upstream 307223 23738357 ~ 23740340 (+)
G201281 NA non-coding upstream 318553 23700719 ~ 23729010 (+)
G201793 NA non-coding downstream 91522 24156506 ~ 24156965 (+)
G201782 NA non-coding downstream 138878 24203862 ~ 24236779 (+)
G201814 NA non-coding downstream 159894 24224878 ~ 24225626 (+)
G201843 NA non-coding downstream 272040 24337024 ~ 24338068 (+)
G201844 NA non-coding downstream 273150 24338134 ~ 24338730 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 359146 23604837 ~ 23688417 (+)
polr2a polr2a,LOC107733452,LOC107584383 other upstream 648900 23272574 ~ 23398663 (+)
G201214 NA other upstream 717992 23324073 ~ 23329571 (+)
LOC117595720 LOC107714409 other upstream 729409 23311260 ~ 23318154 (+)
G201154 NA other upstream 841184 23205666 ~ 23206379 (+)
G201962 NA other downstream 316803 24381787 ~ 24382287 (+)
LOC113527444 chst15 other downstream 390675 24455659 ~ 24506076 (+)
LOC113527710 hmx3 other downstream 596060 24661044 ~ 24666608 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 1264225 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 1432731 25497715 ~ 25498919 (+)

Expression


Co-expression Network