usp22 (LOC108274018,LOC108413479,LOC107726266,LOC107719913)


Basic Information

Item Value
gene id usp22
gene name LOC108274018,LOC108413479,LOC107726266,LOC107719913
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3850678 ~ 3885740 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309195.1
GCCATCCGCCAATCAGGCAGCGGCGCCGTGAGGTTTGTGTCGCCCACGGTGTTCACTTGAATTCCATTGCCGTCCATTAAAACGTCCGACTTGGAAAATACAACATTAAAGTGGCCCCGGGATTAATATCACACTGCGGCTTTGTTGTCGGCACACGGATGCGAAAGATATTTCAGGAGTAAGGATTATATCTCGCGAAAAACTGCCGTATGTGTAAGGCACGCACCTTGAGCGGTGCCGTGGCTGCCTGTATAGCCTGCCAAAACGGAACAATTGGTGGATAATAATCAATTTCTGTCCGTTTTGCTCGGCGGAGCGCGATTCCCGTCGCTGAATATACGCCGCGTTTCGGATGTGATTACACGGCCATGGGTCCGGCCGGCTGCTCCCACGTGAACGGCTTTAAAGTGGAGAACTGGAAGCAGAACCTGCGCGTCATTTACCAGTGCTTTGTGTGGAGCGGCTCGGCCGAAACCAGGAAACGCAAGGCGAAGTCATGTATATGTCACATGTGTGGCGCTCATCTGAACCGGCTACACTCGTGTCTCCACTGCGTCTTCTTCGGCTGCTTCACAAAGAAACACATCCACGAGCACGCCAAAGCCAAGAGACACAATTTAGCTATAGACCTTTTGTATGGAGGAATATACTGTTTTGTGTGCCAAGACTACATATACGATAAAGATATGGAACAGATTGCCAAAGAAGAACAAAGGAAAGCGTGGAAATTGCAAGGTATTGGAGAGAAATATTCGACGTGGGAACCTACAAAGCGAGAACTAGAGCTGCTTCGACACAACCCTAAACGACGGAAGATAACCGCAAACTGCACCATAGgtcTGAGGGGTTTAATAAACCTGGGCAACACATGCTTTATGAACTGCATTGTCCAGGCTCTGACTCACACCCCACTGCTGAGGGACTTCTTCTTGTCCGACAGACACAAGTGTGAGATGCAGGCCAACTCCTGCCTTGTGTGTGAGATGTCCCAGCTTTTTCAGGAGTTCTACTCGGGCCATCGCTCTCCCCACATTCCCTTTCGGCTGCTGCACCTGGTGTGGACACACGCACGTCACCTGGCTGGCTATGAGCAGCAGGATGCACATGAGTTCCTCATCGCAGCGCTGGACGTACTACATCGCCACTGCAaagGGGATGACAATGGGAAGAAGGCTAACAACCCGAATCACTGCAACTGCATCATTGACCAAATCTTTACCGGAGGATTGCAATCAGATGTCACATGTCAAGTCTGCCATGGTGTCTCAACAACAATAGACCCATTCTGGGACATCAGTTTAGACCTTCCGGGTTCGTCCACCCCATTCTGGCCGCTTAGTCCTGGCTCTGATGGGAGCGTGGTGAACGGAGAGAGCCATCCAAGTGGAGCTACCACACTAACGGACTGCTTACGCAgATTCACACGACCCGAGCACTTGGGGAGCAGTGCCAAAATCAAATGCAGCGGTTGCCATAGTTACCAGGAGTCCACCAAGCAGCTGACAATGAAGAGGCTCCCCATTGTGGCATGCTTTCACCtcaaaAGGTTTGAGCATTCCGCAAAGCTCCGGAGGAAAATCACCACATACGTCTCATTTCCATTAGAGCTTGATATGACTCCCTTCATGGCCTCCAGTAAAGAGAGCCGGATGAATGGACAATACCAGCAGCCAGTAGATTCATTAAACAATGATAATAAGTATTCTCTCTTTGCTGTAGTGAATCATCAGGGCACACTTGAGAGCGGCCATTACACCACGTTCATCCGCCAGCATAAGGACCAATGGTTTAAATGTGATGATGCCATCATCACTAAAGCCAGCATTAAGGACGTGCTGGACAGTGAAGGGTATCTGCTGTTTTATCATAAACAGTTCCTTGAGTATGAGTAACCTCTAAAAGCAGATGTTGAAGTTGGACACCTAAAGAGAAGGACCATAAGGGTGAATGGGATggagaaagaaaatcaaaaaagcAAAGAAGGCAGTCAGTCTCACATGAGTACAGCTGGAAGCGGCAGAAACAGCAAGAAAATGCATAACTACCATAATTATTCctagcataaaataaaataagaaatgaaaaccAAATGCATAACTAACTAGCTGAGTTATTCCACACTGAGCTACCAAGatccacttaaaaaaaaaaaaaaagttaaaagtgaGCAAAAAG

Function

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007049 cell cycle biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11366 USP22_27_51, UBP8; ubiquitin carboxyl-terminal hydrolase 22/27/51

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309195.1 True 2175 mRNA 0.48 13 3850678 3885740

Neighbor

gene id symbol gene type direction distance location
cops3 cops3 coding upstream 1049 3834106 ~ 3849629 (+)
pemt pemt coding upstream 78049 3731785 ~ 3772629 (+)
prdm9 LOC108274183 coding upstream 170079 3667153 ~ 3680599 (+)
LOC113547491 LOC108273563 coding upstream 432747 3416204 ~ 3417931 (+)
LOC113547534 LOC100305049,LOC107084780,LOC108411452,LOC105894045,LOC107567432,LOC107670912,LOC105890759 coding upstream 585456 3261534 ~ 3265222 (+)
dnajc9 dnajc9 coding downstream 8543 3894283 ~ 3899869 (+)
LOC113527654 slc39a11 coding downstream 145160 4030900 ~ 4159201 (+)
trnae-cuc_25 NA coding downstream 547501 4433241 ~ 4433312 (+)
LOC113527300 NA coding downstream 658237 4543977 ~ 4547730 (+)
LOC113527299 NA coding downstream 678073 4563813 ~ 4567522 (+)
G190423 NA non-coding upstream 65580 3784232 ~ 3785098 (+)
G190352 NA non-coding upstream 162346 3688098 ~ 3688332 (+)
LOC117598605 NA non-coding upstream 317435 3522966 ~ 3533243 (+)
G190279 NA non-coding upstream 339505 3510795 ~ 3511173 (+)
G190277 NA non-coding upstream 342451 3508025 ~ 3508227 (+)
G190462 NA non-coding downstream 85320 3971060 ~ 3971933 (+)
LOC117598473 NA non-coding downstream 94940 3980680 ~ 3994201 (+)
LOC117598657 NA non-coding downstream 103693 3989433 ~ 3992410 (+)
LOC113527450 NA non-coding downstream 292271 4178011 ~ 4238378 (+)
G190668 NA non-coding downstream 347155 4232895 ~ 4286651 (+)
rasd1 rasd1,LOC107653935,LOC107720458,LOC108412952 other upstream 67069 3781161 ~ 3783609 (+)
lmf1 lmf1,LOC107580192 other upstream 127435 3697794 ~ 3723243 (+)
LOC113547484 LOC108273453 other upstream 397252 3430313 ~ 3453426 (+)
G190212 NA other upstream 445669 3401267 ~ 3405009 (+)
G190028 NA other upstream 611462 3238444 ~ 3239216 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other downstream 17607 3903347 ~ 3930443 (+)
lrrc18b lrrc18 other downstream 707367 4593107 ~ 4596029 (+)
G190865 NA other downstream 869357 4755097 ~ 4839369 (+)
gngt2b NA other downstream 1417337 5303077 ~ 5304909 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other downstream 1444302 5330042 ~ 5340563 (+)

Expression


Co-expression Network