LOC117598490


Basic Information

Item Value
gene id LOC117598490
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1622680 ~ 1650547 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309198.1
TGTAAAAACCTACAgaattacagaattacagattacagaaatCATCAATGCTCTCCGAATGGTGGCTATTATGTTAACATATAGACTTCATCTCAaaTATTTGACTTTGGCAATATTTCCACTTTTGCCGTTCATTTGGTTTTTTTGTCATGCTGTTCGCAAACGTCTGTttttacTCTGGATATCAGTGATGATGATCCTGAAGGTTCTAAGTGCAATAGTGTCGAGCTACATCCATTATGACTTTGTGAATAATGTGAAAGaACGTGACGCATTGACCTGTTTGACTGCATTCCTCCACTTCTTGACCATGATAACACTGTTTACAAGCCTAATGCATTTTTCAGTTACAGAATCTGACTCCAGAAACACTGGGACAGAGTTTCAGCAATCTTTATCCCATTTGGTTGTGTTCGTGTTTGGTACAGCGGTGGTTGTTTTTGTGAATGCTGTTGCGTTATTAGTAGAGCTGATCCTAAAATCAAGAAATGGCCAGCGTACAGTGGATCTGCGAGTTATTCTCCTACAAACTGAATGTGTCTTTGCTGTGTGCTGCCTTGCTTTACAACTATATGCTTTCTGGCAGGAGAACAGAGAaagATTTAGAGAAGACATAAACAGGCTGCGAGGATTGTGTGGGTGTAAACAGACACCGACGATCTCACCTCCAGAAAATGATGAACATGAACTTGAGAATTTAGCTCCTGCTTCTCAGCCCTCAGGGTCTTAGCAGcaaaaatTCCTCAAACACAAACCCAGAAGACTGCCAAAGTACATTTACCTGCTTTCTTTACCGTTCCGACTTGCTGGGGTTTTGTCCGTCACCTGACTTTTTCCCACAGCGCCCACTAGTGACTGTTTTAGTTGATTAGTCTATGCAACACTGAGCATAAAACGATCTGACTTCTGGCTGTGATATACAGTcgtgggaaaaagaaagtacaccctccgtcaattctatgttttttatttatcaacgcctaaataacaattgtgtggtcctcactaacttctataaacaaataactgCAGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309198.1 True 1034 mRNA 0.40 11 1622680 1650547

Neighbor

gene id symbol gene type direction distance location
LOC113535205 NA coding downstream 3266 1613996 ~ 1619414 (-)
LOC113535098 LOC108273774 coding downstream 549454 1065924 ~ 1073226 (-)
LOC113535162 NA coding downstream 666839 944848 ~ 955841 (-)
LOC113535267 rnd2,LOC108273785,LOC103364924,LOC102195949 coding downstream 679353 926188 ~ 943327 (-)
becn1 becn1,atg6 coding downstream 733731 882694 ~ 888949 (-)
LOC113535291 LOC108273550 coding upstream 126257 1776804 ~ 1804114 (-)
si:ch211-217a12.1 si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 coding upstream 162020 1812567 ~ 1822814 (-)
oplah oplah coding upstream 238269 1888816 ~ 1903996 (-)
kcnh4b LOC108273803,LOC103352817 coding upstream 291149 1941696 ~ 1982877 (-)
LOC113535332 LOC108274177 coding upstream 402237 2052784 ~ 2078967 (-)
G189200 NA non-coding downstream 20431 1570108 ~ 1602249 (-)
G189206 NA non-coding downstream 34080 1586131 ~ 1588600 (-)
G189174 NA non-coding downstream 73958 1547696 ~ 1548722 (-)
G189161 NA non-coding downstream 88726 1453904 ~ 1533954 (-)
G189149 NA non-coding downstream 230759 1390363 ~ 1391921 (-)
LOC117598583 NA non-coding upstream 50503 1701050 ~ 1701433 (-)
G189233 NA non-coding upstream 56817 1707364 ~ 1707706 (-)
G189354 NA non-coding upstream 173735 1824282 ~ 1824948 (-)
G189381 NA non-coding upstream 237037 1887584 ~ 1887870 (-)
G189385 NA non-coding upstream 254315 1904862 ~ 1906435 (-)
G189199 NA other downstream 51607 1568286 ~ 1571073 (-)
G189180 NA other downstream 57420 1564890 ~ 1565260 (-)
c12h10orf88 c13h10orf88 other downstream 787920 748738 ~ 834760 (-)
LOC117598518 NA other downstream 984638 636497 ~ 638042 (-)
LOC113534879 NA other upstream 110287 1760834 ~ 1773520 (-)
ppp1r16a ppp1r16a other upstream 174488 1825035 ~ 1869993 (-)
LOC113547489 NA other upstream 543797 2194344 ~ 2210979 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 940690 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 1135534 2786081 ~ 2811391 (-)

Expression


Co-expression Network