LOC113535162


Basic Information

Item Value
gene id LOC113535162
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 944848 ~ 955841 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309225.1
AGCTGCTGAAAGTAGCGACCTGGTTTTCACTGAAGACGAGCAGAAACCCGCAGGAAAGGATGGCTGGCGAAGCGAGGACGATCCGAGTGAGCGGTCTGCCCGTGGACGGTTCTGAAAATCGGCTCATAGACAAACTTCAGATCCATTTCCTGCGTAAAAAGAACGGCGGAGGTGAGATCAGCTCGGTCACGGTTTCCAAAACGGTGCCTGGTACAGCCTTCGTCACGTTTGAGGAGAGCGAAGttGCCTCCAGACTCGCTCAGAGAGGAAATCAGGTTTTGAAGGTCAATGACAAAAGCTATGCCATCACCATCAGTCTTCATCATGAAGAAGTGGATGCAGATCAAgTCCTGCTGTGTATGTCGGTGGTGGTGAACCACAGGAAGCTCCCGGGAGGAAAAAACACTCTTTTGGTTTTGCATAAAAGTTTTCCAGAAGTCCATTTGATTTTCGACGATCAGAAAGACCTCTGCACTCTGAAAGGACGCTACAGCGAGGTTCAGTCGCTCAGCAGCCTGGTGCTGGGATCGCTGGACAAACAGGACCAACACTCAAATTATAAACCACAACCAAAGACAGAAAGCAAAAAGATGTATAACTCACCCATGGAGGAGTCTGTCAGCAGCCACGTGGGGGAAGTTGAAGACATTGGGGTAGTAAAACACACCATGCTGAGTGAAGATTTGGATCCAGACCTGGAGAGTAAAAGCTGGAGAACAGGTTTACCTCTGCCAAGTAGTTACAGTGATCACGCTTCATATGCGGCTTTAAAGGAAGACAAATGGGACTCAGCACCAGATATTGGAACTTCGCTTGAAGACTTTTCCCTGATTGTTGATTCAGATATCTTCAGTTATCTCCATAAATACTGCTTCAAGGAGTACCAAAGCATCCTCAGGCAGCACAGGGTAGAGGTTCTGGATGTGAATTGTGACGACATCACGACTTTGTATCTCAAACCAAAAACAGCCCTGTCTGAATATAACATAAGTTCTGTTCAAAATGCCCATCGAGATCTGGCACATCTGTACCAGCAGAAAGAGTCGCAGTTACGCAAGGAGCATGTTTATAAGCATGGAATTCCAGAGAAGGAACTCAGACTTGCTCTGGAGTCCCTTAGGAAGAGGCTGCCGAAGCTGATGATCAATGAAGAGGACAGAAATGTGTATATGGTTGGAAGTAAAAGTGACGTATCTGAAGCCAAGCAGTTTATTGGAGATATGCGAGGGTTTGGGATGGAGAAAGAAATCCACTCAGATGTTCTGTTTGTTCAATCCAAGAGTACCTTCTCGAAACAAGGAAGCTCAGCATCATCAGAGCCGTCGGGCATCCTTCCACCATCGTTTCAGGATTCTCATGATCTATTCATGCCAAAGAAGGACCTCCAAGATGCAAACCAAAGAGGGATTCCTAGTGAGAATGCTAGCAAGAGAAGACAGAATTCTGTGGAAATGAAAAATTTCGAAGACCATTCACCCACTGGACAATTTACCTTCCCAAGTCAAAGAATCGAGAAGTCGACAGAAGACATATTCGATTTGAAAAAAACTGAAGTTTCACAAGAGAGACATGTCCCAAGTGATCTAGAATGGTTGAAGCCTGGTGGTTGGCctgacagaaataaatacacagattcTCTCTTTGACTCTTCCAAGTCCTCAGCGCCACTCTCCATTTTGGATACAGAcaaaaaattattcagtaagtCAGACTTCATTTCAGGCAAAACTGAACTCCCAAGCCATTCAGACACACAACTCAAGTCAGGTAAAGGATACAAGACCAAACAAATTGAGCCTGGGAAGGAACGAAAAATGGCTGCCAATTTTAGTAGTGATGTGTGCAGTGGCATGAAGGATTTAACGTCTTACAAATCGGAAACTCCCAAACTGGTTGAAGGTGCACATGTAAAAGAATTAAAGTTTCCTGATAGTGGACAGCCACACTCTCTTCCCTTTATCAAGCCATCAATGAATAGCAATCTGGATCCAAACACCTTACGTGGTAGTACAAGTGCAAAAACCAGCATTGGCAAGATGGATATCCAAGAACTAAAAAGTGACCCATCAAAATTTGGTCACTTTCCATATGACAAGAAACCTACAGTGACTCCAGCTTGTTTGAGTGGAGACCAAGATGTCAAAAGTCTCCCCATCATGCCTTCAGAATCAACCCTGAGAAGGTCCAATAGCTTCAGTGGCAGGCTCAAAAAAGGTGAGGAACCAACGCAATTAGCTGTAGATCCATCTGCTGGACAAAAGGGAATAAGCCAAAATTCTCAGACAAGGGAAATTGTGACTATGGATTTAGTATTGTCGTTTAGACTGTGGCTCTATCTTACATCAgtttttaatactgaaattgagAATTTGACATCTGACCTacaagtgaaagaaaaaggGGGTAAGGAAGACATCACATTATGTCTAAGAGGTGTAGACTCGGGAAAGGTGAGTGAATGTCACAATGGTTTGAAGAGTCTCATTGCTAGAGTTGAAATGGACTTTGACACAAGAACACTACCACTGTCCAAGCTTGGAGTGTCAGACAGCAAGGATAAGACCTTGCTAGAGTTGTGTACATTAATGAAGCAGCGCTATAAGATGGCTAAAATTCTAGTAATGTCCAAGGATATGATGATCCTAGGCCCTAAAACATTGTGTGATGAGGTAGAGGCCAATATAATGAAGTTTTTCCATAAAGGGGGAAATACTGCAAATTCAAAGCCGGAGAACAAGAAGTCTCCCAACCCAGATAGTTTACATACCAACAAAGCACCTGACAGTGATTTAAAATTACTTGGCAGCCAGTCGACAACCTCAGCAAAACCACATACCGACATCATTATGAAAGATCTATCCAAAATGTCTGACCAAAGTGTTGCTCGTTCCTCAAAAAGGGAACGAGCAACTAACCAGACTAACCAAACTAGAGACAACCGAGAACAAGACAAGCAAAGTGGGAGCCAGAACaagatgaaagaagaaaagttgGAACATTTGGATAAGAAAGATCCAAATACCTTGCTGCAGGGAGATGGTAGGACCATGAACAATGAGAATGGAGGCACCTCATCTGGCACCATCATCAATTCCACCACAAAAGACAAAGCAGGTGGTGAGAATAACAAAGACCATACAAGCACCACTGGTCAGAGCAAGGAAACCTTAACTGAACAAATGAACCCAGGCATTTCAGTGGACCAAATCAGAGATTCTCAGGGGTCACCTGAAGTTTCAGGACCCATGAATGACATACTGCCATCCCATGCAAGTGGAAATCAGAACCTTCTTTTATGctatgtgtgtgaaaaagagtACAGCACTGTTAAACAGGCAGTATGTGGCTATAACTTTTGCCCCGAGTGTGACAAAGAAGTTCACAACAACTGCAGAATCTGTTCTGCCTCTGGTATCAAAGGTACCATGTCTATTCAAGAATCAACAATAACAATTCCTGGATTTAACAGAGACACAACTCTGAGGATTATCTACGATATACCTGACGGTATTCAAGGGGAGGATCATCCCTGCCCAGGGGCACCTTTTAAAGGGAACAGATTTGAAGCCTTTTTACCTCATAACAAAGCCACTAAAAAGCTTCTGCCTCTTCTGGAGAAAGCTTTTCACAAAGGACTCACCTTCACCGTGAAAGCAGGATCTTCAGATGACGATGGAAGAGTGGTTTGGGGCAACATTCCTCATAAAACCAGGACAGAAGGGGGCGCATCTATGAATGGCTATCCGGACTTTAACTACATCAAACGCTTGGAAGTGGCGCTGACGGCAGCAGGAGTCGAAGAATAAATTCTTTCCATGACTGTTTTTTATCACACCTTGTTCTCACGACTCGGAATTGTGTAGAGAATCCTTCATAATTCTTGCAGATTTATTGCTTAGATCACGCCACCAAGCTTCAGAGCTCAGTTTCCTGTCGTCTTCTCCCCATGTCCGtgtggtttcctctgggttctccggtttcctctgtGCATGGAGTCCTGTGATGTACTGCCGTCCCGTctggggtgtattcctgctCTGCACCtagcgttcccgggataggctccagatcctcGGATATAGCGAAGATGAATAAATtgatttatacttttatacattagcatttaaaatattatacttttgaaatatttagtattttattactCCTGTTTACACTTCAGAAACACAGGTTTGGCAGTAACGCCAAAGTGAAGTGCACTAGTGTGCAGCAGTGCCTTCTGGGTAAGCTGTATCTGTACTTGTAAAGAGATTTCCAAAGTCCTCTAGCACAGATTactccacagatttttagcAGTTTGCGTTTCCTTACATTGTGTTAACTAATGactaataaaacaataacactATCCATAAGAGGGATGAGTGGAAgtgaacattaaaaacattggAATGCAGAGCATCTTCAGAGTTTCGATCTAAAATTACTGAAGTGATTTACTGTTTGAAATTAACAGGATGAATAATTCATCACGGTATGTACCTGATATATCAAATACAGCCGGTTTgagtgtaaatatgtaaaaaacaaacaggaaatattGTGAATTATGGGACCTGGACATGTTGACAGTAGGCTAGTAATTAAAATGACAGTGGTTTAAGGATTAAAATGATTAgatataatagtaatagtaatatatactgtatgtaaagagGATTTAAAGACATTGTTATGTTTATTTCCAtgattgtgtttctgttttaactgaataaaaacgTCTGTCTTAGACCTG

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309225.1 True 4753 mRNA 0.42 8 944848 955841

Neighbor

gene id symbol gene type direction distance location
LOC113535267 rnd2,LOC108273785,LOC103364924,LOC102195949 coding downstream 1521 926188 ~ 943327 (-)
becn1 becn1,atg6 coding downstream 55899 882694 ~ 888949 (-)
vps35l c13h16orf62,cunh16orf62,zgc:163107,cssa28h16orf62 coding downstream 65721 868037 ~ 879127 (-)
waplb wapl,LOC108435041 coding downstream 225915 692948 ~ 718933 (-)
LOC117598555 NA coding downstream 308466 633003 ~ 636382 (-)
LOC113535098 LOC108273774 coding upstream 110083 1065924 ~ 1073226 (-)
LOC113535205 NA coding upstream 658155 1613996 ~ 1619414 (-)
LOC117598490 NA coding upstream 666839 1622680 ~ 1650547 (-)
LOC113535291 LOC108273550 coding upstream 820963 1776804 ~ 1804114 (-)
si:ch211-217a12.1 si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 coding upstream 856726 1812567 ~ 1822814 (-)
G189050 NA non-coding downstream 18792 925824 ~ 926056 (-)
G189035 NA non-coding downstream 64611 879745 ~ 880237 (-)
G189010 NA non-coding downstream 112033 831820 ~ 832815 (-)
G188929 NA non-coding downstream 159867 691599 ~ 784981 (-)
G189077 NA non-coding upstream 58076 1013917 ~ 1028653 (-)
G189090 NA non-coding upstream 84900 1040741 ~ 1041113 (-)
G189056 NA non-coding upstream 90268 1046109 ~ 1047784 (-)
G189067 NA non-coding upstream 109329 1065170 ~ 1071217 (-)
G189145 NA non-coding upstream 349325 1305166 ~ 1370050 (-)
c12h10orf88 c13h10orf88 other downstream 110088 748738 ~ 834760 (-)
LOC117598518 NA other downstream 306806 636497 ~ 638042 (-)
G189180 NA other upstream 609049 1564890 ~ 1565260 (-)
G189199 NA other upstream 612445 1568286 ~ 1571073 (-)
LOC113534879 NA other upstream 804993 1760834 ~ 1773520 (-)
ppp1r16a ppp1r16a other upstream 869194 1825035 ~ 1869993 (-)
LOC113547489 NA other upstream 1238503 2194344 ~ 2210979 (-)

Expression


Co-expression Network