LOC113536986 (LOC108273772,LOC108273771)


Basic Information

Item Value
gene id LOC113536986
gene name LOC108273772,LOC108273771
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 83710 ~ 105920 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309254.1
CAGAACTAGTCGTTACCCACGTGATctgaaaagtgaaagtgaacGTGACTCGTTCTGCAGTTATTCGCAGACATGGAGACTGCTGTAACGAGGTGCTTTTATCTGTTCCTGTCGGTGGTCATCTGTAACGAATACTTCTTCTGGTGATTGTTTTGACTATTTGTAATAAATGACAGTCACAAAAGAAACAGGTTTAAAAGACCTGAGAAGAGGTAACAGAAGACAGCATCGTATCTTCTGCCACAGCAGGGGAAGCATGTTCGTAGATGTTCTGAAGaaatgcagAAGAACCTGTGAAGAAGAAACTGAGGAAGGCTTTCTATCTTCTGTAGAAACCTCTTCAGGAGTGTTCTAAaggataaagttttttttattatattattaaaaatgattataattattagcattttttttctttgaaccCATCAATACATTGTAATTCTCCAAAATGTGGACatattatttttgattatttttgtaaacaaattcTAGCCATAAATtcaattaacaaataaaatacctTAACAGGAGCATTTGTGTCCATTTTTCCCAGTGCTGTTTCCTGAGGTGATGATGGGACTGAAGAGAGCTTAATAATCATCTGAAGAGAGAGATAATCTTGGATTCTTTTACATACATCATTTTCTATTCAGAGATCGCTCACCTTATTATGTCTCCCTTTGAAGGGAAAGGCCTTAGAAAGACGACTTTGCCTTCTCTGCCTCCATCTGTCCGTGTCCAATATATGGATCTGGAAGTGTCCATTGTGTATCTCCAAATTCCCTGAGCAGTGCATTGTGGCTTTTTTGAGAGGTTACCACAAAGTCATCGAGTCGAATGCAGTTGTGTGATCACAGGTTAGGAAAGTTCCAACTGGGAGTGGTGAGACCCCTTTTAATGGGTTTTTTGAATGATGCTCCCTGTTGCATCCAAATATAGAATATCGTCCACTGTCCTCTGATGGTATATTTCTATGGTCTTCTGAGACCATAGCATTACACTTTTAGggtttaaaattacattttgcagCATGTCATCATCAGTGCCTGCTTGTTCCTCAATCATTAGCTGCAGGCTCATCATTTCATTctcatgctttctttcttttttttcggTGCTGGCAAGAAATCACTTTTAAAACTCCAGGACTTGGAGCTTGATCTCTGCATCCAGATTCCACCACAGGTTCTTCCAAATTATGCAGAGATTCACGATACAGTGCCCTGGGTGGTTTTCCACTTGGTGTCATCCCTATTTCTTTCCGAGCTTCAGCTCTAATTGGTCTCCTCTTCAGCTCCTCTGTACTGTGACACACAGGATCTCCCTGAAAGtgtttttattcactttaggGTTCCATCTCCACGGTCCCTCTGATCCTCTCATTGCCCAGCTGGGAGGCTCAGTGATGCTGCCCTGCTTTGTAGAACGTCCTCTACCAATAGAAGAACTGGAAGTGGAGTGGAAAAGAAATGACTCTGAAACTCTAGTGCACTTGTGGCAGGAGGGAGAGAGTCGACCAGAGTCTCAGAACCAGCGTTATCGTGAAAGAGCTCATTTCTTCACTGAGGAGATCGCCCATGGaaacttctctctcttccttacAAATGTGACCCGTGAAGATGTAGGAGTTTATAAGTGTGCTGTTTACACAAACCTGGACTCTGATGAAACTCTGATTGAGATAAAGGAGATTGAGCGCTTGATCGTGTCTGGAGGCCACGTCATATCTGCTTATGCTGGTGAAGATGTCACTCTGAATTGCTCTGTAGACTCAAATATCCCACCGGAAAATATAGAAGAGGTGTCATGGAAGAAAATGGATGAAGATATCTTAGTGCTGCTTTATCAGGAGAGTGAGGTCCTGACAGACTCATCCcatgagagatacagagacagagtcGAGTTCTTCAGTGCTGAAGAAAGGAACAAAGGAAACTTCTCATTGAGACTGAAGAGTGTTCAAACTGAGGACAAAGGGCTGTATATATGTTTAGCATTCTCTGGGGCATTATCAGATAATACAACTGTGGAAGTGCAGCAGCTGGGTTTTTCCTCAATGCATATTGGAATTTTTGTTCTATGTATACTTGGATTTGTAATTGGATCACTTATCCTAGGCTACCTATCTTttacatcttttaaaaatgaagatgACAGCAGAAGAGCCCTAGCTATACACTGTGCGCATGTCCTTTCTCCTAATATTACTATGTTTATTGTCTTCATCCTTTGGGGTGTTACTGAGGAACCCAAGGTCAATTGTCTCCAGTCCTCCATGTCTAAGAAATGCTACAAAGCAGTGGCCATGTCTGTCAGAGCCCTGAATGCTTCATCTTTGCTCATGGCCTGTCAGGAAGATATGACAGCCTCACCCAGCCCAGCACTGTGGGACGAGATGTGCCTGGTCACAGATCTCTGCCTGCGCCTTCACAGATGTGCAGTTCTTCAGTGAATATCGCTTAAATTGTACCTCCCCAGGAAGCAAACGGCTCCCTCCCAGACACCTCAGCAGATGTTCGCTCAGGCTGTAGCCCGTCCACCCGCCTACTAAAAGAGCCTTCAGAGCCTAGAGGCACAAAGAAGCCAGGCTGATAAGGCCAGAACCTCATGAGGGATTTTTACTGAAGCAGCAACTTGTTCAGCACTTAATTTTGTTAGGATCTTTTTCCTACTTTGGATCACTCTGCATTTGACAACATTTCAAGATTATCTCCACCAGTTAATTAACCGCTTGGCAATTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309254.1 True 2742 mRNA 0.42 12 83710 105920

Neighbor

gene id symbol gene type direction distance location
LOC113536897 NA coding upstream 12553 14641 ~ 71157 (+)
LOC113535310 NA coding downstream 15347 121267 ~ 125839 (+)
LOC113535195 LOC108273631 coding downstream 28317 134237 ~ 136788 (+)
si:ch211-207i20.2 LOC108274000 coding downstream 33939 139859 ~ 151454 (+)
LOC117598554 NA coding downstream 168461 274381 ~ 275446 (+)
btbd16 btbd16 coding downstream 615131 721051 ~ 753040 (+)
LOC113537089 NA non-coding upstream 75195 8047 ~ 8515 (+)
G188466 NA non-coding downstream 51592 157512 ~ 182875 (+)
LOC113535322 NA non-coding downstream 138003 243923 ~ 254748 (+)
G188605 NA non-coding downstream 403110 509030 ~ 511976 (+)
G188681 NA non-coding downstream 528480 634400 ~ 634983 (+)
G188694 NA non-coding downstream 587039 692959 ~ 694469 (+)
ccser2b ccser2 other downstream 31601 137521 ~ 222419 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other downstream 619113 725033 ~ 784991 (+)
LOC113535146 LOC108261429 other downstream 851612 957532 ~ 974218 (+)
LOC117598477 NA other downstream 1461596 1567516 ~ 1665813 (+)
LOC117598558 NA other downstream 1831767 1937687 ~ 1952224 (+)

Expression


Co-expression Network