mrpl38 (mrpl38)


Basic Information

Item Value
gene id mrpl38
gene name mrpl38
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19863312 ~ 19871403 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309279.1
CGTATTTCAAGATGGCGCTGCAGAGGACGGTAGCGAGGTTGGTGCGCATCGGGACGGATTTAGGGGTCAGAAATAATGCGAGacattttaaaacagcagCTGTATTATGTCGCCGGACTGCACCACTTGGTCCAATGCCAAATGAAGACATAGACTGGAAGAACCTGGATGCTCTGGAGAAATACTGCAGTTACACGCGCTATCTCAGAATTGCAGAAGAGGCCAATAATGAAGAAGTCTGGTGGAAGACCTACAGGAAACATGTGGAACAGAAATCTGACAAAGACTTTAAGCCGGTGGACATCGGCTTGCCTCATTGCCGACCCTCCAGGTTAAAGGAAGCTCGGGAAAGAAGAAAGGTGatgaaggaaaacaaaaagaacccagagctggagagagacgCTCGTCTACGCACATTTCGCATTCCTTTGGACGAAGTGAAGCAGGAATGGGAGAAAACAAATGGCCCTTACCACATACAGAGGCTGGCAGAGCACTATGGAATATACAGAGACCTTTTCCCCATGGCCTATTTTGTTCCAAGGGTAATGCTGAGGGTGGCATATGGAGACGACAGCAGTGCCATGGTGCATTATGGCAATCATTTATCACCTACTCAGGCTTCTGCAGCACCTCAGATTAGCTTCGAGGCAGAAGAGAATTCTCTTTGGACATTGCTGCTAACAAGCCCCGATGAACATTTGCAGGATGGTGAGCAGGAATATGTGCATTGGCTGGTTGGTAATATTCCTGGAAATGCTGTATGTTCTGGTAATGAGATCTCTCATTACATGACTCCATTTCCTGCCAAGGGAACAGGATTTCACAGATACGTCTTTGTCCTGTTCAAGCAAGATGCTGTTGTTGACTTCAGCAGTGATGTCAGACCAAATCCCTGtTACAGTCTGCAGCAGCGAAGTTTTAAGACACTGGACTTCTACAGGAAACATGAAGATCTAATTACTCCTGCTGGACTGGCTTTCTTTCAAAGCCAGTGGGACAACTCTGTCACCAGTACTTTCCACACATTGTTcaATATGAGAGAGCCAGTGTTTGAGTACGACCGACCACCGGTGTATCATCCACCCCAGAAAAAATACCCTCATGGTCAGCCGCTTCGATACCTGGACCGCTACAGAGGCGGAAAAGAACACACATATGGCATTTACTAAAAAAACAATCTGTACATTTGTTATTGTAGaaatttctaataaaaatttatttacatccaa

Function

symbol description
mrpl38 Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL38 (mitochondrial ribosomal protein L38).

NR:

description
PREDICTED: 39S ribosomal protein L38, mitochondrial-like isoform X1

GO:

id name namespace
GO:0005840 ribosome cellular_component

KEGG:

id description
K17419 MRPL38; large subunit ribosomal protein L38

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309279.1 True 1232 mRNA 0.46 9 19863312 19871403

Neighbor

gene id symbol gene type direction distance location
wbp2 wbp2,LOC107549326,LOC107567801,LOC107740862,LOC107578800,LOC107666818 coding upstream 9562 19845510 ~ 19853750 (+)
dhx32a LOC108273822,LOC108429422 coding upstream 22286 19830602 ~ 19841026 (+)
LOC113527774 LOC108273823,LOC108429440 coding upstream 37434 19727671 ~ 19825878 (+)
c12h10orf90 LOC108273407 coding upstream 143558 19694398 ~ 19719754 (+)
LOC113527107 NA coding upstream 489963 19370326 ~ 19373349 (+)
gpx9 LOC108273566,LOC108439462 coding downstream 141304 20012707 ~ 20017504 (+)
LOC113527727 LOC108274321 coding downstream 315402 20186805 ~ 20200272 (+)
LOC113527333 LOC108273935 coding downstream 331191 20202594 ~ 20228997 (+)
zgc:165653 LOC108274081,LOC108437900,LOC105888795 coding downstream 387471 20258874 ~ 20288139 (+)
mtr mtr coding downstream 419190 20290593 ~ 20316556 (+)
G199161 trim65 non-coding upstream 6832 19792634 ~ 19856480 (+)
G199051 NA non-coding upstream 436717 19426380 ~ 19426595 (+)
LOC113527366 NA non-coding upstream 548497 19309483 ~ 19314815 (+)
G198901 NA non-coding upstream 1038751 18823633 ~ 18824561 (+)
G198886 NA non-coding upstream 1094622 18768393 ~ 18768690 (+)
G199187 NA non-coding downstream 5338 19876741 ~ 19885988 (+)
G199216 NA non-coding downstream 72841 19944244 ~ 19944466 (+)
G199217 psd non-coding downstream 79384 19950787 ~ 19953308 (+)
LOC113527335 NA non-coding downstream 363412 20234815 ~ 20251474 (+)
G199796 NA non-coding downstream 723838 20595241 ~ 20595444 (+)
LOC113527713 fam196a other upstream 296628 19526642 ~ 19566684 (+)
si:ch211-221j21.3 LOC108273429 other upstream 1051050 18806077 ~ 18812262 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other upstream 1353153 18441886 ~ 18510159 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other upstream 1703226 18155145 ~ 18160086 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other upstream 2291247 17545793 ~ 17572065 (+)
si:ch211-216b21.2 LOC108273439,LOC107082319,LOC108429207,LOC107704231,LOC105932487,LOC108246656,LOC108274355,LOC102229454,LOC106946734 other downstream 1585988 21457391 ~ 21500929 (+)
G200571 NA other downstream 2131421 22002824 ~ 22003274 (+)
srsf2a srsf2,LOC106612293,LOC107702465,LOC107566380 other downstream 2137108 22008511 ~ 22012304 (+)
LOC113527202 NA other downstream 2142403 22013806 ~ 22026481 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other downstream 2926739 22798142 ~ 22871284 (+)

Expression


Co-expression Network