lrrc20 (lrrc20)


Basic Information

Item Value
gene id lrrc20
gene name lrrc20
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25975031 ~ 25981707 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309307.1
CGTAAAGCGAGTTGCTGGTGTTTTGCGACAGTTAACACAGGCGGCAGCGCTGTAGTCCGGTgcgtttgtttatttttgttggtTTAATTCTGAATCACAGCTAATAAAATTGACTTAAAGCGATAAACAGCTGCATAACAAAGTACTAGAGGGTCAAATCGCTTAGATTaaactttgtttaaaaacaggTGAAGGAAAAACGGATTCCTCTAGCTGGCACAGGATGGGCGAGGCGGTGGCGAACGTCGCCAGGAGAATCAATGCGACGATGgaggacggattagacacgttaGatcTCTCGGACTGTAACCTGATCGGATTCCCTGATGGCGTCTTAAAAATGATTCGTAGCTGTGCAGATAGAATACACAAAATCACACTGGCCAACAACAAACTGAAGAATTTAGGGGAAAAGTTTTTCACCATGTTCAGCCAGTTAAGAGagCTGGATTTGCAGGGAAACATGCTGACTAAACTCCCAGATGCCATCGCAGGAATGCAGCATCTCATCAGCATCGATTTATCCAACAATAACTTCAGTGTTTTTCCCGAACAACTGACGAATGTGCACACGCTGCAGAACATCAACATGTCAGGAAACCAGATCtcagAGGTGCCGTGGGAGCGCGTGTGTGCGATGTCGTCCCTGAGCGCTGTGGATTTGAGATCTAATCCGCTTTCTTCATCGCCAAACGGTTCACAGAAGTTTACTCTcctcacatagacacacagacgTCGTCATCTGCAGTTCATGCTGGATTGGATGAGGAAATCGCTGGAGTAGCTCTCGATCCTGGGCTACGTCCCAAACCTCGTGCTACTGTGCTAATTAGTGTGgcaaaatattacagaaataaaggtTACTATATTTAAAAGA
>XM_034309308.1
tgatggtgtttccTTGTCGATTTCGGACGCACCCCTGTTACCGTAAAGCGAGTTGCTGGTGTTTTGCGACAGTTAACACAGGCGGCAGCGCTGTAGTCCGATTCCTCTAGCTGGCACAGGATGGGCGAGGCGGTGGCGAACGTCGCCAGGAGAATCAATGCGACGATGgaggacggattagacacgttaGatcTCTCGGACTGTAACCTGATCGGATTCCCTGATGGCGTCTTAAAAATGATTCGTAGCTGTGCAGATAGAATACACAAAATCACACTGGCCAACAACAAACTGAAGAATTTAGGGGAAAAGTTTTTCACCATGTTCAGCCAGTTAAGAGagCTGGATTTGCAGGGAAACATGCTGACTAAACTCCCAGATGCCATCGCAGGAATGCAGCATCTCATCAGCATCGATTTATCCAACAATAACTTCAGTGTTTTTCCCGAACAACTGACGAATGTGCACACGCTGCAGAACATCAACATGTCAGGAAACCAGATCtcagAGGTGCCGTGGGAGCGCGTGTGTGCGATGTCGTCCCTGAGCGCTGTGGATTTGAGATCTAATCCGCTTTCTTCATCGCCAAACGGTTCACAGAAGTTTACTCTcctcacatagacacacagacgTCGTCATCTGCAGTTCATGCTGGATTGGATGAGGAAATCGCTGGAGTAGCTCTCGATCCTGGGCTACGTCCCAAACCTCGTGCTACTGTGCTAATTAGTGTGgcaaaatattacagaaataaaggtTACTATATTTAAAAGA
>XM_034309309.1
gtttccTTGTCGATTTCGGACGCACCCCTGTTACCGTAAAGCGAGTTGCTGGTGTTTTGCGACAGTTAACACAGGCGGCAGCGCTGTAGTCCGgTGAAGGAAAAACGGATTCCTCTAGCTGGCACAGGATGGGCGAGGCGGTGGCGAACGTCGCCAGGAGAATCAATGCGACGATGgaggacggattagacacgttaGatcTCTCGGACTGTAACCTGATCGGATTCCCTGATGGCGTCTTAAAAATGATTCGTAGCTGTGCAGATAGAATACACAAAATCACACTGGCCAACAACAAACTGAAGAATTTAGGGGAAAAGTTTTTCACCATGTTCAGCCAGTTAAGAGagCTGGATTTGCAGGGAAACATGCTGACTAAACTCCCAGATGCCATCGCAGGAATGCAGCATCTCATCAGCATCGATTTATCCAACAATAACTTCAGTGTTTTTCCCGAACAACTGACGAATGTGCACACGCTGCAGAACATCAACATGTCAGGAAACCAGATCtcagAGGTGCCGTGGGAGCGCGTGTGTGCGATGTCGTCCCTGAGCGCTGTGGATTTGAGATCTAATCCGCTTTCTTCATCGCCAAACGGTTCACAGAAGTTTACTCTcctcacatagacacacagacgTCGTCATCTGCAGTTCATGCTGGATTGGATGAGGAAATCGCTGGAGTAGCTCTCGATCCTGGGCTACGTCCCAAACCTCGTGCTACTGTGCTAATTAGTGTGgcaaaatattacagaaataaaggtTACTATATTTAAAAGA
>XM_034309310.1
agggatTACTGAAGTCACACAGATTCCTCTAGCTGGCACAGGATGGGCGAGGCGGTGGCGAACGTCGCCAGGAGAATCAATGCGACGATGgaggacggattagacacgttaGatcTCTCGGACTGTAACCTGATCGGATTCCCTGATGGCGTCTTAAAAATGATTCGTAGCTGTGCAGATAGAATACACAAAATCACACTGGCCAACAACAAACTGAAGAATTTAGGGGAAAAGTTTTTCACCATGTTCAGCCAGTTAAGAGagCTGGATTTGCAGGGAAACATGCTGACTAAACTCCCAGATGCCATCGCAGGAATGCAGCATCTCATCAGCATCGATTTATCCAACAATAACTTCAGTGTTTTTCCCGAACAACTGACGAATGTGCACACGCTGCAGAACATCAACATGTCAGGAAACCAGATCtcagAGGTGCCGTGGGAGCGCGTGTGTGCGATGTCGTCCCTGAGCGCTGTGGATTTGAGATCTAATCCGCTTTCTTCATCGCCAAACGGTTCACAGAAGTTTACTCTcctcacatagacacacagacgTCGTCATCTGCAGTTCATGCTGGATTGGATGAGGAAATCGCTGGAGTAGCTCTCGATCCTGGGCTACGTCCCAAACCTCGTGCTACTGTGCTAATTAGTGTGgcaaaatattacagaaataaaggtTACTATATTTAAAAGA

Function

symbol description
lrrc20 Orthologous to human LRRC20 (leucine rich repeat containing 20).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 20-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309307.1 True 877 mRNA 0.45 5 25976685 25981707
XM_034309308.1 False 774 mRNA 0.48 5 25976644 25981707
XM_034309309.1 False 782 mRNA 0.48 6 25976651 25981707
XM_034309310.1 False 696 mRNA 0.47 5 25975031 25981707

Neighbor

gene id symbol gene type direction distance location
ndr2 nodal coding upstream 1191 25969969 ~ 25973840 (+)
star2 LOC108274109 coding upstream 156103 25803789 ~ 25818928 (+)
tbata LOC108273511 coding upstream 183351 25773514 ~ 25791680 (+)
polr3a polr3a coding upstream 229911 25709893 ~ 25745120 (+)
LOC117598572 LOC108273858 coding upstream 577014 25394338 ~ 25398017 (+)
sdk2b sdk2b,sdk2,LOC108442036 coding downstream 303967 26285674 ~ 26426786 (+)
LOC117598613 NA coding downstream 445142 26426849 ~ 26429873 (+)
LOC113547530 LOC108274151 coding downstream 455336 26437043 ~ 26444597 (+)
LOC113547461 LOC108273446,LOC105918829 coding downstream 536283 26517990 ~ 26526734 (+)
ndufb8 ndufb8 coding downstream 557532 26539239 ~ 26546663 (+)
G202541 NA non-coding upstream 6459 25948871 ~ 25968572 (+)
G202467 NA non-coding upstream 192320 25692079 ~ 25782711 (+)
G202455 NA non-coding upstream 277881 25641036 ~ 25697150 (+)
G202457 NA non-coding upstream 325149 25648389 ~ 25649882 (+)
G202445 NA non-coding upstream 372593 25598775 ~ 25602438 (+)
G202557 LOC108273842,LOC108266876,LOC108266882,LOC108266898 non-coding downstream 7401 25989108 ~ 25995087 (+)
G202567 NA non-coding downstream 51433 26033140 ~ 26033815 (+)
LOC117598627 NA non-coding downstream 77917 26059624 ~ 26064285 (+)
G202593 NA non-coding downstream 137017 26118724 ~ 26137814 (+)
G202761 NA non-coding downstream 222951 26204658 ~ 26207793 (+)
G202374 NA other upstream 472403 25498180 ~ 25502628 (+)
G202397 LOC108273443 other upstream 476112 25497715 ~ 25498919 (+)
dupd1 comtd1,cmtd1,LOC108273857 other upstream 546919 25329209 ~ 25428112 (+)
LOC113527710 hmx3 other upstream 1308423 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 1468955 24455659 ~ 24506076 (+)
LOC117598538 NA other downstream 17944 25999651 ~ 26005825 (+)

Expression


Co-expression Network