fam13c (fam13c)


Basic Information

Item Value
gene id fam13c
gene name fam13c
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7547063 ~ 7560750 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309325.1
CAAATTATATCACGTGTGAGAACATCGTCCGTCCCTCGGATGCAGGAAAAACCTCCATGCCACGCCTGAGAAACCCCCGCCTCGCCTTCTTACCCCACGCATCCTCTCCTCACTCCCACTCCCTCACTCCAACCAGTTCTCCTATCGCTTCAGCCAGTCTCATCCGGCCTGCCCTGGGGCTTGCTGACGCTAGCAgaccccccccacacacacacacacaacccttctttttctctctctcactctttcccaCCACTGCATGAATAATCCAGGCGAGGGTaggagctgctgctgcagcATTCATATGATCggagcacattcacacacccccTCTTGAACACGCATGTGAACAGCAGCAGAGGCAGGGCtgagtactgtgtgtgtgagagcgagacTGCGGCGGCATTCCAGCTCTCCATCTCTTCGTCTGACACCCGCCGGATTGCTCagtctcctcttcctccatccCAGCCTTTTTGCCTATACCTCGTTGGCATGTTTTGCTTCTGCCTGCAGGGCTCTCTGTTGAAGCTCCAGGCTCTGGAGGAGGATGCCAGCTCGCCACCGGATTCTTCTCCCGATGAAAGCCCAACCAGCATGGGTGGCAGAGAGGAGACACAGCCCCCCTCACGCGGCAGCCTGAGAGATGAGAACAGCCTTCAAGatcgtAGGCAGTCTGAAGGCGACTGCAGCAGTGAACCCCAGCAGAACCCCGGTCCCAGTCGACTCATCTCTTACATTACGGATGGGAACAGCCCTTTACCCTCACCACGCTGTGCCAGCCTCAGCCTCAGCCAGCGCTTCAACACCGACCCTGAGAGTGCACCATCACCTCCCTGCACACAGCATCTCATTCTgcctCGTGGGATGGTCAGACCGGAGACCTCTGATGATGATAAAGACACACCATCTATTCCGTTACTCACTAAACACATCCAGACGCTCAAGAGAAGAATACGCAAGTTTGAAGAACGCTTCGAACAAGATATGAACTACAAGccctcCCATAATGACAAGTCTGCTAATCCAGAGATATTCAAGCTCATGAGTGAACTGGCCAAGTCTCGCAAGCAGCTCAAAGATCTGAAGCTGAGGCAGTCAGTGGAGGAATCGCGAGGCCAAGAGAACGACCAGCCCACAGGCACCTGTAGATACTCAAACGGCCTGCATGAGGCGccggagcagcagcagcagcagcacaaaccCTCTCTGGAGGAGACGGTGGACATGCTGCTGAAGCGACTGAGGGAGAAACGCCAGGCCCTTGGCCTCCCAGACAACATGAAGGAGATGACCCAGAGGCAGATGGCGCTGGAGAAGCTCACGCTGCAGAAATGCCTGCTGTATTTCGAGAGTCTACACGGACGCCCTGACACCAAGCAGGAGAGAAACCTGGTGAAGCCGCTCTATGACAGATACCAGATGGTCAAGCACCTGCTGTGTGCCACACCCACCATAACCACCATCgaggaagaggaagggtCTGATGAAGAGTACGTGCAGCAAACTCAGCCCCCACGGCAAGCAACCCCAGAGTCCATGGAGGAAGACGAGGAAGGGGACAGCGACACGGCATTTGTGTCCCCTCTGGACGAGGTGAAAGCGGTTCGACAGCCTGCCCTCAACATGTCCAACCTCCACGCTGCTTCCAGATCTGAGCTGCTGCAGTGTCTGCGTGAGACTCGTGCGGAGAAGAAGAGGAGACGGAAAGCCATCAGGGAGTTTGAGGAGCAGTTCTTCAGACAGATGGGCAGGACTGCACAAAAGGACGACCGGATTCCCATGACAGAAGAATATCAAGAGTACAAAAGCCTGAAAGCCAAACTGCGCTTGCTGGAGGTTCTGCTTAGCAAACAGGAAACCACATAGACTATTcaaggaatatatatatatcctggtTTGCCTTTCAAAACAGATCTAGACATTTGGACCAAACCATGTTTTTGCTTACATATTACATGCTCGTGCCATAATAACACTACAATGCACTTTAACAATGATTCTACGTTGAGCTGCCCAGACCTCCCAGACACAGGGTTTGATCTaactctaagaaaaaaaaaaa

Function

symbol description
fam13c Orthologous to human FAM13C (family with sequence similarity 13 member C).

NR:

description
protein FAM13C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309325.1 True 2065 mRNA 0.54 10 7547063 7560750

Neighbor

gene id symbol gene type direction distance location
zgc:171971 LOC108273425 coding downstream 104351 7435509 ~ 7442712 (-)
ube2d1b ube2d1,ube2d1b,LOC106607701,LOC105891213,LOC107717106,LOC107553913,LOC107733527,LOC105010549 coding downstream 119229 7421966 ~ 7427834 (-)
pcdh15b pcdh15b,pcdh15,LOC107695531,LOC107654051,LOC108273410,LOC108411428 coding downstream 314988 7047571 ~ 7232075 (-)
a1cf a1cf,LOC107695528,LOC107708930,LOC107654048 coding downstream 699097 6836437 ~ 6847966 (-)
aarsd1 aarsd1,LOC107695514,LOC107739756,LOC107708900 coding downstream 780963 6756785 ~ 6766100 (-)
slc16a9b slc16a9 coding upstream 13326 7574076 ~ 7579872 (-)
tmem26b tmem26 coding upstream 243770 7804520 ~ 7809766 (-)
egr2b egr2,egr2b,LOC107739063,LOC107596614,LOC107653961,LOC107596611,LOC107593522,LOC107745678 coding upstream 418806 7979556 ~ 7990069 (-)
jmjd1cb jmjd1c,jmjd1cb,LOC108412835 coding upstream 460784 8021534 ~ 8141060 (-)
LOC113527613 cyp26a1,LOC108273895,LOC108412396,LOC103044660,LOC107745679,LOC107653962 coding upstream 637334 8198084 ~ 8201220 (-)
G192437 NA non-coding downstream 118180 7428587 ~ 7428883 (-)
G192385 NA non-coding downstream 234176 7228390 ~ 7312887 (-)
G192074 NA non-coding downstream 731628 6813165 ~ 6815435 (-)
G192075 sgms1 non-coding downstream 737305 6808205 ~ 6809758 (-)
G192062 NA non-coding downstream 746987 6799642 ~ 6800076 (-)
G192545 NA non-coding upstream 68561 7629311 ~ 7630373 (-)
G192583 NA non-coding upstream 279613 7840363 ~ 7841460 (-)
G192584 NA non-coding upstream 280879 7841629 ~ 7841947 (-)
G192585 NA non-coding upstream 281310 7842060 ~ 7842634 (-)
G192611 NA non-coding upstream 314016 7874766 ~ 7877699 (-)
ipmkb ipmk other downstream 128685 7400000 ~ 7418378 (-)
itga3b itga3 other downstream 952673 6546941 ~ 6594390 (-)
LOC113527291 LOC108274042 other downstream 1755793 5768528 ~ 5791270 (-)
G191430 NA other downstream 1933109 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 2056138 5484691 ~ 5490925 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 20600 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 40468 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 1286912 8847662 ~ 8857748 (-)
LOC113527700 shisa6,LOC108273473,LOC108424875,LOC107706559 other upstream 1807467 9368217 ~ 9419487 (-)
trnam-cau_28 NA other upstream 1955064 9515814 ~ 9515885 (-)

Expression


Co-expression Network