Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC117598554 |
| gene name | NA |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 274381 ~ 275446 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_034309343.1 | True | 729 | mRNA | 0.63 | 2 | 274381 | 275446 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:ch211-207i20.2 | LOC108274000 | coding | upstream | 122927 | 139859 ~ 151454 (+) |
| LOC113535195 | LOC108273631 | coding | upstream | 137593 | 134237 ~ 136788 (+) |
| LOC113535310 | NA | coding | upstream | 148542 | 121267 ~ 125839 (+) |
| LOC113536986 | LOC108273772,LOC108273771 | coding | upstream | 168461 | 83710 ~ 105920 (+) |
| LOC113536897 | NA | coding | upstream | 203224 | 14641 ~ 71157 (+) |
| btbd16 | btbd16 | coding | downstream | 445605 | 721051 ~ 753040 (+) |
| htra1b | htra1,LOC107660481 | coding | downstream | 518992 | 794438 ~ 823982 (+) |
| zgc:174164 | NA | coding | downstream | 560605 | 836051 ~ 856083 (+) |
| get4 | get4,LOC104959995,LOC103374619 | coding | downstream | 582622 | 858068 ~ 867809 (+) |
| LOC113535268 | NA | coding | downstream | 613730 | 889176 ~ 920532 (+) |
| LOC113535322 | NA | non-coding | upstream | 19633 | 243923 ~ 254748 (+) |
| G188466 | NA | non-coding | upstream | 91506 | 157512 ~ 182875 (+) |
| LOC113537089 | NA | non-coding | upstream | 265866 | 8047 ~ 8515 (+) |
| G188605 | NA | non-coding | downstream | 233584 | 509030 ~ 511976 (+) |
| G188681 | NA | non-coding | downstream | 358954 | 634400 ~ 634983 (+) |
| G188694 | NA | non-coding | downstream | 417513 | 692959 ~ 694469 (+) |
| G188715 | NA | non-coding | downstream | 464980 | 740426 ~ 741752 (+) |
| G188730 | NA | non-coding | downstream | 558657 | 834103 ~ 834569 (+) |
| ccser2b | ccser2 | other | upstream | 51962 | 137521 ~ 222419 (+) |
| plekha1b | plekha1,LOC107716481,LOC107660484 | other | downstream | 449587 | 725033 ~ 784991 (+) |
| LOC113535146 | LOC108261429 | other | downstream | 682086 | 957532 ~ 974218 (+) |
| LOC117598477 | NA | other | downstream | 1292070 | 1567516 ~ 1665813 (+) |
| LOC117598558 | NA | other | downstream | 1662241 | 1937687 ~ 1952224 (+) |
| pyyb | NA | other | downstream | 2249610 | 2525056 ~ 2528820 (+) |
