vps35l (c13h16orf62,cunh16orf62,zgc:163107,cssa28h16orf62)


Basic Information

Item Value
gene id vps35l
gene name c13h16orf62,cunh16orf62,zgc:163107,cssa28h16orf62
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 868037 ~ 879127 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309345.1
CATGACACTGATTAGAAGATGGCTTCTGTTCAGTGGCATTCTCGTACGCGCAACTATGACGCAGAGTCGCGGAGCTGCCGTGCGTCGGCCGTCCCTGTGCAGAGCGGCGATTACCATCCGCTCAAACCCATTACAGTGACGGATTCCAAGTCGCGACGTGGAGCACGGAAAGGCAGCACGTCTTCATCCTCGTCTTCCTCCAGCTCTGTTGCTCCTGATCCTCTGAGCTCCATGCTGGAAGGCACGGACCCGCTGTCCCTCTTCGCCGCCGCCTCAGCCAGCGAAACTCCCGCGCTGCCTCACAGCAGCTCTTCCGTGgaGCTGGGGAGGAAGCGGAGGgaaaaggaagaggaagtggGCTGTGACTTTGAGCCGTGGTCCGCTAAGCGGGGCGAGATCCTGGCCAGGTTCACCACCACAGAGAAGCTCTCTATAAATCTCTTCATGGGCTCAGAGAAAAgtaaAGCCACCAGCCCCAGCTCTGCGGTCTCGGAGAAAGTGCGCACTCGTCTGGAGGAGCTGGACGACCTGGAGGAAggctCTCAGAGGGAGCTCCTCAACCTCTCTCAGCAGGATTACGTTAACCGGATCGAGGAACTGAATCAGTCCCTAAAAGAAGCTTGGGCTTCAGACCAGAAAGTCAAAGCGCTCAAAATCGTCATTCAGTGCTCCAAGCTGCTTTCAGACACGTCCGTGATCCTGTTCTACCCCAGCAAGTTCGTCCTCATCACCGACATCCTCGACACATTCGGTCGTCTGGTGTACGAAAGAATCTGGTCCATGTGCTCGGATCCTGCTCCTCTGCCAGACTCGTTCTCTGTGGAGGATGTGAACGACACGGCCAGAGAGACGTGTCTCAACTGGTTCTTCAAAATCGCCTCCATCAGAGAGCTCATCCCTCGCCTATACGTGGAGGCTGCTATCCTGAAGTGCAATCGTTTTGTGAACAAATCTGGGATTCAGGAGACTCTTCCCCGGCTCACGGCTATGATTCGAGGGATCGGAGACCCTTTAGTGGCCGTGTACGCTCGAGCCTACCTGTGCAGGGTGGGCATGGAGGTGGCGCCGCACCTGAAGGACAGCCTGAACAAGAACTTCTTCGACCTCCTGGCGTCTTTCCGACAGATTCACAGCGACAGCGTTCAGAATCAGCTGGTCATCCAGAGGGTGGAGATTCCCGTCTACCTCACGCTGTATTCTCCTGCCATCCACTGGATCCTGCAGTGTGTGGCTTACCGAGCAcctgatGTGCTGCTAACAGAAATGATGGAGAGATGCAAGAAGCTGGGCAACAACGCTCTCCTGCTGAACTCGGTCATGTGGGCCTTTCGGGCCGAGTTCGTGGCCGCAAGAGCCACGGATTTTATCGGCATGATCAAGGAGTGTGACGAGGCTGGATTTCCCAAACACCTGCTGTTTGGCTCTCTGGGCCGTAGCTTGGCCTGTGCCGACCCTCCTGAGAGCGAGAGGCTGCCCGTCCTTAACGAGGCCTGGAAGGTCATCACAAAAGTGCGCAGCCCGCAGgactACATCAACTGTGCTGAAATTTGGGTGGAGTTTACCTGCCGGCACTTCACTAAAAGAGAGGTGAATACCGTGCTGGCTGACATCATCAAACACATGACGCCTGACCGCGCGTTTGAGGACGCTTATCCGCAGTTGCAGTCAGTGATGAAGAAGATCCTCACCTACTTTCACAACTTCTCCGTCCTCTTCTCCATGGAGAAGTTCTTACCCTTCTTGGACATGTTCCAGAAAGACAGCGTGAGAGTGGAAGTTTGTAAATCCATCATGGACGTCTTCATCAAACATCAGCAGGAGCCAGGAGCCAACATCCACATTTTCATATCTGCTGtccccacaccacacacaccacacaaaacCATCAGCCTCGACTCTGTCAATGCTCTCACAGTGGAGGATGAGAAAAGAGCTCTAGCGCTGCTGATCAATGGCTTCATTCGCATgGTATCTTTTGGCCGAGACTTTGAGCAGCAGTTGAGTTTCTGCGTGGAGGCCAGAGCCACGTTCTGTAACTTGGAGCCAGTTGTCATTCAGCTTATTCACACGGTGAATCATTTAGCCATGGAGACGAGACGAGTGATGGGCGGGAATCACTCGCGCAAAACGGCTGCGTTCGTCCGGGCGTGTGCAGCGTACAGTTTCATCACCATTCCGTCTCTCAGCAGCGTCTTCAGCCGCCTCCATCTTTACCTGCTTTCAGGACAGGTGGCTTTGGCCAATCAGTGCCTTTCCCAGGccgaTTCGTTTCTGAAGGCAGCGGTCAGTATTTTGCCTGAAGTGCCCCGTGTCATTAACGTGGAGGGTAAACAGCGTTCTTCTGAACCTTTTCTCCTCGACTTCATCAACAACTTCCTGTCCACGCTGCTGGTGGTGCCGgaccACCCTGAGCAGGGCGTGTTGTACTTGGTGAGAGGATTGTTGAACATGGTGCAGGATTACACGTGGGAGGACAACAGCGACGCAAAAGTGCGTGTGTACATCAGTGCGTTACCGCTGCTGGCTGCCATGAGTCAGGAGAGCTACCTTTACACCATTCctaaagTGGACTCTAACGAGACGCTGTACGGCGGCGACCCCAAGTTTGTAGCCGAGATCAGTCGAGTGTGTGAAACTGTGATTGGCCAGGTGCTGGATTACCTGAAGACTCTGAACCAAGATGAGggagcGCGCCGGCAGGGAACTCTCGCTTTCGCTCTCTTCAGCTGTTTGTTGGCTCACGGAGATCTGCGCAACAACAAACTCAACCAGCTCGCCGTTAATCTGTGGAACCTGAGCCATAAGAACGGCTACTGCGATACGCGCACCTcggtgcGCACGCTGGAGCACATCAAGCAGCAGGCCCAGCAGCCCGACATGGCTCACCTCTCCGACATGCTCCTGCGGCTCTCCCTGCAGTCACGAGCCTGAAATtcagtgacctttgacccttgAGTACGCAAGGCCCGGCGCTGACGCATTCCTGACCCTCCTGTCACCGATTACGTCAAAGAAACGACAAGAAACGTCACTTTACCTTCGCAGCACTAATTAATCGCTGATATGCGTGTTATTTTGCATTACGActttatttctcatttaaacCTGTAAAGCTGACGTGAATAAAAATGGCTCACGTGACGCTCACCCCGTCCtgcgatctgattggctgagaggttaaaaaaatatatatttgatgtCACTCAGTGTGTGCTTTTCTTGAGCACACTGTAAATTTTATGGTTAAATGTTCTATACGTAACTGCACATTTCAGCACATTCTGCATCATTAATAATCACgtttagttaaaataaataacaaaaaaaaaacattgtgaaaCTTTAAACTGGTATTATGACAATGTCCCCTACTTGTTTTTGCCATCTTTAATAAATCTTTATGTTGTTATGCGTA

Function

NR:

description
PREDICTED: UPF0505 protein C16orf62 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309345.1 True 3415 mRNA 0.52 31 868037 879127

Neighbor

gene id symbol gene type direction distance location
waplb wapl,LOC108435041 coding downstream 149104 692948 ~ 718933 (-)
LOC117598555 NA coding downstream 231655 633003 ~ 636382 (-)
grid1b grid1,grid1b,LOC106578986,LOC106589364,LOC102194564 coding downstream 247281 339066 ~ 620756 (-)
becn1 becn1,atg6 coding upstream 3567 882694 ~ 888949 (-)
LOC113535267 rnd2,LOC108273785,LOC103364924,LOC102195949 coding upstream 47061 926188 ~ 943327 (-)
LOC113535162 NA coding upstream 65721 944848 ~ 955841 (-)
LOC113535098 LOC108273774 coding upstream 186797 1065924 ~ 1073226 (-)
LOC113535205 NA coding upstream 734869 1613996 ~ 1619414 (-)
G189010 NA non-coding downstream 35222 831820 ~ 832815 (-)
G188929 NA non-coding downstream 83056 691599 ~ 784981 (-)
G188923 NA non-coding downstream 94454 545624 ~ 773583 (-)
G188922 NA non-coding downstream 96022 770453 ~ 772015 (-)
G188918 NA non-coding downstream 333761 533507 ~ 534276 (-)
G189035 NA non-coding upstream 618 879745 ~ 880237 (-)
G189050 NA non-coding upstream 46697 925824 ~ 926056 (-)
G189077 NA non-coding upstream 134790 1013917 ~ 1028653 (-)
G189090 NA non-coding upstream 161614 1040741 ~ 1041113 (-)
G189056 NA non-coding upstream 166982 1046109 ~ 1047784 (-)
c12h10orf88 c13h10orf88 other downstream 33277 748738 ~ 834760 (-)
LOC117598518 NA other downstream 229995 636497 ~ 638042 (-)
G189180 NA other upstream 685763 1564890 ~ 1565260 (-)
G189199 NA other upstream 689159 1568286 ~ 1571073 (-)
LOC113534879 NA other upstream 881707 1760834 ~ 1773520 (-)
ppp1r16a ppp1r16a other upstream 945908 1825035 ~ 1869993 (-)
LOC113547489 NA other upstream 1315217 2194344 ~ 2210979 (-)

Expression


Co-expression Network