LOC113535268


Basic Information

Item Value
gene id LOC113535268
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 889176 ~ 920532 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309346.1
GTGCTTACGTCGGTCACGTGACCGAAACAGTCGCGGGAAAACACAAATATGATTATTTCCGAGTGTTAGCTAAGCGGCTACACGGACTCGAACTCGTTTCTCTTTTTTATGACTATTTTTACAGAAGTTTGCTGTTATTAATCAGCGAGAAACACACAGGAGCATCGATAGGCGCTCGAGACACTTTGGACGTAGCGATGAGTGCGGTGAAGGCAGAAGACGTGAAGCGAGGCATCTCTGTGATTTGGGAGAATCTGCAGTGTCCCATATGTCTGGATTTGATGAGCGAACCCGTCTCGACCCGCTGTGATCACCAGTTCTGCAAATTCTGCATGACCAAGCTGCTGGAAAGGAATAAGAGAAAAGAGACGAGCTGCCCCGTGTGCAAGACGAAGGTCACCAAGAGgaGTCTGCAGGAAAGTCCAGGCTTCCAGAAACTGGTGGAAGGTCTCCAGAATTTAGTTCGTTCTTACGAATTTGATACGCGCACaaactATTTGACTGGATTGCCACAGAGGAGACAGGGCGCTAGTGTTGAGACGGAGTCGAGAGATCAGCAGGGCAGCGGAGAGAACACGACCTCAGAGGGCGAAGTGACGGAGAAAGAAGCGACTCTTTCCTCCACAGCAGCAGCTAAAGATGCTTTCGCAAAACTCATGTGTTTCGAGGATTCATGTCCTGCCACTTCAGAACAGGATTGCTTAGACAGAAGTCCTGGAGATGTGCCACAAAAATCGAGAATAAACGCTGCAGATCGTGAAGAAGCTCCACCGAGAGCAGAAGCCAGTGACTCGCAGACGCAGCAGGATGTCACTCCAGATGACGGGAGACGTTCCCGCAGGAGATCTAAGCGCCTCTGTTTGGAGCCAGACAGAATTATGGAtaaaagacagaagaagagTGTGCAGAAGGTGTCCGAGTGGTTGCTGAAGATTTCTCCGACTTCTGACACACAAACCGGAAGCAACACGGAAGGAGATCTTCCGAATTTGACAGACAGCGATGCTGAAAAAGAGAGTACAGCTTCACGTGCGTCGACGGAGATTAACGCTTctgataaagataaagataaagctGACGCGAGTCCGGAAAGGGAAGTGCCTTGTCGAGGTCTGGAAGAGCGAGTGTTCGGAGCTGTGTATAAACGCGAGCGCAAAGTTGTCAAGACCACCAAAGTCACCAAAAGTTTCTCTCCTGAAAGAGAGATCGCGCCTGTCGTTCCATCCGGAAATTTATCGGAAAAGGATGAAAAGATCAAGATGCCTCAGAGGAGGTCAAGCCGTAAGTTGACTCCAGCTGACTTTATCAGGAAGACGTCAAATGAAGATAAAGAAGATGGAGTGAATCAAGAGGAAGTTGATGAAGGAAGCAAACAAGAAAACAGCAGCGAGCCGTTAAAGTCCTCAGGTGAGCAGGAAAAGGTGGTGCAGATTGGTCCTGATGATGAAAACGCTGAAAATACAGAAGAAAGTCCAGCATTTGAGGTGCCATTGAAGAAACAAGGGAGGAGATCAAAGATGCAGGAGATTTGGCAAGATGTGGATCGTGACTTGACggagaaagaaaacaacacGGACATCAAGAAAGATCGGAAGAGACGGATCACTAGGAGCAGCCGTGACACTGCAAAATCTGACGATTTGGAAAAATGCAAAAGTGCCAAATATTCCAAGTCCCTTGCTCTAGTCAGTGCTGGAACGGAGATTGTTGATTTGAGGGAGAACGTTCCGGGTAATCCCAAACTAATCGAGGCAGAAGTTAATATTGAAAGTTACCCTAGTAGCGCAGAGCCGAAGTCTCCTGATGCTCGGAAAACCAGACGAAGCTCAAGGCTGCAGGAGTTCACCGCGGAAGTTCAGGGTCTTCCGAGAAGAAGACGGTCTAAACAAGCTCTTCCAAAACCTGCTGACGGACCTGAACATAATACATCCACTAACCTGGATGAGCCACGATCAGCGAAGACTGATCATGTTGGTGCAGGTCAGCCTTCACAGAGTGAGAAACCAGAACGGTCTGTGAGGAGAAACGGTTGTGTTTACAACGATGACTTTGAAAACATTGAAATCGTGCAGTCAGGCGAGGATGCAGCTGCTCCTAAGTGTGTATCCGAGGGGACTGTAACTGAAGAACATTCGCTCGTTTCCGTCGTCCCAGACACGGTGGATCAAGACAAGCACGATATCCCTCGTTCTACCAAAGTTGCAAACTCGACAAGTCCGTTAGCGGCTCTGGTTCCAGAATCCTTTCCACAGAAACGTCAGGAATCACCAGCTACAAAAACGCTGACACCTGCTGTGGAGCGCAGAGATACAGACCAAGGAGAAGACACCAATGATAGTGAACTTGACACTGAGCAACTCATGAAGACCTTCAAGGCCACCAAGAGAAAATCCTTCTACCTGGGTAGTCCCAGGACTTCACACTCCAGAACGCAAGAGAAATCCCTTACTCAGATTTTAGAGGAAGAGAAGCAGGAGAGCGTAGATCAAGCACAGATACCAGGCATCTCTCCGGACACTGATCAAGTTCTACCCTCAAATCCTTGTGAGCTGGCACCCCGTGAGATCACGCCCCAAACATCTCAAAGCTGTATTGCAGATTGTGTTGCAAGTGTCAGTCTGCTTCAGGTGAAATCACCTGCTCTTCCCAGTCTTCCAGAAGACACCCAAAAAGACAATTCCGTAAAAACCTCAGGTGCCAGTGACCATCCTGAGAAGGTTGCAAAGTCTCAAGATTCCTCAAGTTCTCAAGATTCCAGGCTTCCTGTGAACCTTGAATGTGCAAATTCCGTCCAGCTTTTCTCTACAACCGTGACCCAAGAGGAGCCACAAATCTCTCACAGCGAAGATTCAACAAAGTCTCCAAAGTCTTCAGAAATTCAAGGGAAACAATCGCAAGCAAACATTGACGTAGACTTGAACACAATTTCCAGCATCCCGTTGGGAAACATGACCAACTCGTCCGTAACCCCAGATGGCCTTGTAACAAATGGTCCTGAAGCTCTGGTCATGGAACCTGCAGCCACTCAGAACGTGGATAAGATGGATGAAGGAGAAATTCTTTCTCAGCCATGTTTGCGGAGGAAGAGGAAGGCCCAGAGACTGGAGTCTACAGATTCCGAATCCAGTCTGGAGGATGATGATTTACCCCCACTAGCCCAGATATTTAAATCTCACCATTCGTCCTCATCGTCTGCCAAAGATCCAGTGATGAACTCTTTAAACCAAGATGGCCTCCAAGCTGAAGAACGAAGCCCAAAGCCAGGTTTAGACCCTGTGAGTCAGGATAGTCGCTCTCGCAGTGACCCAGAAGCTGAGTCAAGTTCTGCAAGCCAGAGTGTCGCTCCTTATCAGAAACAGCAATCTCCTGAAGACGTAAACTCTAATAATGTACAAGATGGCGGTGTTCCTGACTCACCTGGCAGAGATGAGTGGATTACTTCTAGTCAAGGATCTGTGGATCTTTTTGGGACACCACGGGAAAGTGAAGAAGTGGTTGACGGTGTTTGTGGAAACACAGGGCTTTCCATCGAGTCAACTCAGTACTCAAGCGAATTTATTACCACTCAGCAGAGACAGGAGATGCAGCAGGAGCTGCACAGGCTGGAGAGGATGATGGCGTTAGTGTCTGAGGCGATCCAGAAGAAAGACGGCGACTCGGACGAGAAAAATAAGACGGAGGACGGCGACCAGCGCTCAGGGCAGCGAGGCAGAGTCAGAAGTCAGCGATCCTGTAAAGGCGGAAGGCAGCCGtctcagaggtcagaggtcagaggtcagcgTGCCGTGCCTGAGGATCAGAGCGCTGATGTGATGGTGGAAAAGAAGCCGAATGAGCTGAGGGGAGAAAGTACAGCCGGTGATATGATACCGATATCcaaaataatcagtgatggggGCCTGATGAAGAAATTTGCGAGGAAGATGAAGGCTGGTGTAAGCAGTCAGGTCACTCCCACTACGactcacatcatcatcaaaacagATGGAGACTTGGTGTGTGAGCGAACGCTGAAGTACTTCCAGGGCATCGCTGGCAGGAAGTGGGTGTTGAGCTTCCTGTGGATCTCGGAGTGCTTCAAACACGGCAAACTTCTAGCTGAAGCTCCGTATGAGGTTTGCGGTGACGTCGTTAACGGACGCGACCACAACGGACCCCGAAAAGCCCGAACCACTCCGGATGATAACctGCTGATGAAAGGATGTGAGATCTGCTTCCAGGGCTCCTTCACTGACATGACCACAGATCAGATGGAGGTCATGGTGGAGCTGTGTGGTGCTACGGTCATGAAAGATCCGCTGATGTTCTCCAGAAAGgctCTCCGTTATCAGCTGGTGGTGGTTCAGCCAGGCCCTGATGACTCTCAGTCCTACTACGCAGCTCTGCAGAGAAAAGCCACCGTAGTGACTCGGAGCTGGCTCTTGGATTCAGTCGCCACGTACACGCTCCAAAATCCACGTGATTATAAACCGTAATGacgatgtttttgtttttgtgggggtttttttcccttctcttgctttctctgcttgtttttctctccttaCTTGCACTTTATTTTGCGCAGAGCTCAAACCGCTCACTACTTTTCCTTTCACTTTTTCCTTTCAAAAAAAAGAAtctattttaaagtgtgttgtAAATAAGACTTTGTCCTTGTACATTTCAGTATAAAACACTCAACAGGT

Function

GO: NA

KEGG:

id description
K10605 BRCA1; breast cancer type 1 susceptibility protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309346.1 True 4688 mRNA 0.49 20 889176 920532

Neighbor

gene id symbol gene type direction distance location
get4 get4,LOC104959995,LOC103374619 coding upstream 21367 858068 ~ 867809 (+)
zgc:174164 NA coding upstream 33093 836051 ~ 856083 (+)
htra1b htra1,LOC107660481 coding upstream 65194 794438 ~ 823982 (+)
btbd16 btbd16 coding upstream 136136 721051 ~ 753040 (+)
LOC117598554 NA coding upstream 613730 274381 ~ 275446 (+)
LOC113535123 NA coding downstream 55991 976523 ~ 996803 (+)
dbf4b NA coding downstream 78255 998787 ~ 1009835 (+)
adam11 LOC108431418 coding downstream 93397 1013929 ~ 1046212 (+)
fkbp10b fkbp10,LOC108273773 coding downstream 135259 1055791 ~ 1065735 (+)
LOC113535337 NA coding downstream 159431 1079963 ~ 1111182 (+)
G188730 NA non-coding upstream 54607 834103 ~ 834569 (+)
G188715 NA non-coding upstream 147424 740426 ~ 741752 (+)
G188694 NA non-coding upstream 194707 692959 ~ 694469 (+)
G188681 NA non-coding upstream 254193 634400 ~ 634983 (+)
G188605 NA non-coding upstream 377200 509030 ~ 511976 (+)
G188747 NA non-coding downstream 2073 922605 ~ 922805 (+)
G188749 NA non-coding downstream 3753 924285 ~ 924490 (+)
G188761 NA non-coding downstream 54265 974797 ~ 975865 (+)
G188770 NA non-coding downstream 125968 1046500 ~ 1050620 (+)
G189170 NA non-coding downstream 625266 1545798 ~ 1546582 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 104185 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 666757 137521 ~ 222419 (+)
LOC113535146 LOC108261429 other downstream 37000 957532 ~ 974218 (+)
LOC117598477 NA other downstream 646984 1567516 ~ 1665813 (+)
LOC117598558 NA other downstream 1017155 1937687 ~ 1952224 (+)
pyyb NA other downstream 1604524 2525056 ~ 2528820 (+)
G189864 NA other downstream 1840161 2760693 ~ 2761010 (+)

Expression


Co-expression Network