LOC113530124 (LOC108273772,LOC108273771)


Basic Information

Item Value
gene id LOC113530124
gene name LOC108273772,LOC108273771
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1344046 ~ 1352973 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309347.1
ATGGAATGCTTCTCACTCAGCGAGATCGTCATCTCCCTCGCCAGTCTCCACCAAACCCAACAGCAAGTGCTTTTCAACCTGCACCACAAGCAGCAGCTGCTCTTCAAAGCCCTCATGGTGGAGCAGGCCAAGAGCTGCATCCCACCACATctccagaagctgctgcagCCCACCACATCTCCAGCTGTGAGTCCTTCAATGGTGCCACATGTGACAATCACCAAGATGGCCTCTACGAATGATCTGGAGGCCTTCCTGGAGCTTTTTGAGCATGCGGCAGCTGTGGGAATGGGCAAGTTCCCAAAATTGCTGCAAGgGTTCCGTGTCCATGGTCCATCTGATCCTCTCATTGTCCAGCTGGGAGGCTCAGTGATGCTGCCCTGCTTTGTAGAAACTCCTCTACCAACGGAAGAACTGGAAGTGGAGTGGAAAAGAACCAACTCTGAAACTCTAGTGCACTTGTGGCTGGACGGAGAGAGTCGACCAGAGTCTCAGAACCAGCGTTATCGTGAAAGAGCTCATTTCTTCACTGAGGAGATCGCTCATGGaaacttctctctcttccttacAAATGTGACCCGTGAAGATGCAGGAGTTTATAAGTGTGCTGTTTACACAAACCTGGGCTCTGATGAAACTCTGATTGAAATAAAGGAGATTGAGCGCTTGATCGTGTCTGGAGGCCACGTCATATCTGCTTATGCCGGGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309347.1 True 711 mRNA 0.51 3 1344046 1352973

Neighbor

gene id symbol gene type direction distance location
LOC113534962 NA coding upstream 3127 1290300 ~ 1340919 (+)
LOC117598519 NA coding upstream 61416 1237398 ~ 1282630 (+)
LOC117598515 NA coding upstream 140840 1184093 ~ 1203206 (+)
LOC113536883 NA coding upstream 168002 1129869 ~ 1176044 (+)
LOC113535337 NA coding upstream 232864 1079963 ~ 1111182 (+)
LOC113535212 NA coding downstream 51315 1404288 ~ 1455520 (+)
LOC113535294 LOC108273771,LOC108273772 coding downstream 135198 1488171 ~ 1492211 (+)
LOC117598650 NA coding downstream 211072 1564045 ~ 1565763 (+)
aclyb LOC108431393,LOC103369716 coding downstream 226324 1579297 ~ 1602265 (+)
klhl11 klhl11,LOC107674689,LOC107556757,LOC107551837 coding downstream 247568 1600541 ~ 1608897 (+)
G188770 NA non-coding upstream 293426 1046500 ~ 1050620 (+)
G188761 NA non-coding upstream 368181 974797 ~ 975865 (+)
G188749 NA non-coding upstream 419556 924285 ~ 924490 (+)
G188747 NA non-coding upstream 421241 922605 ~ 922805 (+)
G188744 NA non-coding upstream 430673 905466 ~ 913373 (+)
G189170 NA non-coding downstream 192825 1545798 ~ 1546582 (+)
G189190 NA non-coding downstream 256853 1609826 ~ 1612220 (+)
G189245 NA non-coding downstream 422632 1775605 ~ 1776432 (+)
G189280 NA non-coding downstream 510229 1863202 ~ 1863652 (+)
G189293 NA non-coding downstream 534677 1887650 ~ 1887870 (+)
LOC113535146 LOC108261429 other upstream 369828 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 559055 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 1121627 137521 ~ 222419 (+)
LOC117598477 NA other downstream 214543 1567516 ~ 1665813 (+)
LOC117598558 NA other downstream 584714 1937687 ~ 1952224 (+)
pyyb NA other downstream 1172083 2525056 ~ 2528820 (+)
G189864 NA other downstream 1407720 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 1617152 2970125 ~ 3021609 (+)

Expression


Co-expression Network