aclyb (LOC108431393,LOC103369716)


Basic Information

Item Value
gene id aclyb
gene name LOC108431393,LOC103369716
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1579297 ~ 1602265 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309349.1
ATGCACACTCTCGCGCGCGTCGCGAGAGTCGCGTGTCGCGCGCACACTCGCGTGTCGCGTCGCGACGACGCGTGTCGCGTCGCGCAGACACGCGCGTGTCGCGTCGCACCGCCGTCGCGCACGCTCACGAAGTGTGTTTCGCGTCGCGAGAGAGTGCGCATCTCTGCTAAAGCCATCTCGGAGCAGACGGGGAAGGAGTTCCTGTATAAACACATCTGCACGACGGCGGCTGTCCAGAACCGCTTCCTGTACGCCACCGTCACAGCCGAAACCGACTGGGAGCGACTGGCACAGGACCACCCATGGCTcctcactcagCAATTGGTCGTGAAGCCCGATCAGCTGATCAAGCGCAGAGGGAAGCTGGGTCTGGTGGGCGTCGACCTCGACCTCCAGGGCGTTCGTGATTGGCTGAAGTCACGTATGATGAAAGAAACTACAGTCGGAAAGGCGAAGGGAATCCTGAAGAAATTCCTGATCGAGCCGTTTGTGCCGCACTcgcagGAGGAGGAGTTTTACGTGTGTATCTACGCCACACGTGAGGGAGATCACGTGCTTTTCCATCACGAGGGAGGCGTGGACATCGGGGACGTAGACTCCAAAGCACAGCGCCTGCTGGTCGGCGTGGACGAGAAGCTCGACACGGCCGCCGTGACCGAGCAGCTGCTCACACACGTCCCTGATGAGAAGAAGGAAGTTCTGGCCAGTTTTATCGTCGGACTCTTTAACCTGTACGAGGATTTGTACTTCACCTACCTGGAGATCAACCCGCTCGttgtCACGCAGCAAGGTGTGTACGTTCTGGACATGGCGGCCAAAATCGACGCCACGGCCGATTTCATCTGCAAACCAAAGTGGGGTGATGTGGAGTTTCCTCCTCCGTTTGGCAGAGAAGCTTATCCTGAGgaagcCTACATAGCAGATCTGGACGCTAAGAGCGGCGCGAGTCTCAAACTCACCCTGCTGAACCCTCGAGGGCGCATCTGGACCATGGTGGCAGGAGGCGGAGCCTCCGTCGTCTACAGTGACACTATCTGCGATCTGGGTGGAGTGGACGAGCTGGCGAACTACGGCGAGTACTCCGGCGCTCCAAGTGAACAGCAGACGTACGACTATGCCAAGACCATCCTCTCCCTCATGACCCGCGAGAAACACCCCaacgGTAAAGTTCTGATCATTGGAGGAAGCATCGCTAACTTCACCAACGTCGCAGCTACGTTTAAGGGTATAGTGAGAGCCATTAAGGACTATCAGGGTCCTCTGAAGGAGCATGAGGTCACTATTTTTGTGCGTCGAGGAGGACCGAATTACCAAGAAGGCCTCAGGGTGATGGGAGAAGTCGGAAAGACCACTGGGATTCCCATCCACGTGTTCGGCACAGAGACTCACATGACTGCCATTGTTGGCATGGCGCTTGGACATCGCCCAATCCCGAATCAGCCTCCGGTTGCCGCCCACACTGCCAACTTCCTGCTTAATTCGAGTAGCAGTGCTGCGACTCCAGCAACAACCAGAACTGCTTCATTTTCTGAGCACAGACCTAACTGCGACATCACACCGGCTAAAAAGCCCAAACCCGGAGTTCCACCAGTGTCCTCTCTCTACCAAACTTGGTCAGTGAAGAGTGCATGCAGCACCAGTGTCAAAGAGCACAAGAGCACAGCAGAGCGGAGCGGAGcGAAAGCTACCACTCTGTTCAGTAAGCACACTAAGTCTATAGTGTGGGGGATGCAGACGCGAGCGGTTCAGGGAATGATGGACTTCGACTACGTCTGTTCTCGTGATGAGCCCTCAGTAGCCGCCATGGTTTATCCGTTTACCGGAGACCACAAGCAGAAGTTCTACTGGGGTCATAAGGAGATCCTGTTACCCGTGTACAAGAACATGGCCGACGCCATGAAGAAGCACCCGGAAGTGGACGTCCTGATCAGCTTCGCGTCTCTGCGCTCGGCCTTCGACAGCACTATGGAGACCATGAACTACCCGCAGatcCACACCATAGCGATCATAGCCGAGGGAATTCCTGAAGCGCTGACGCGGAAACTCATCAAAACCGCAGACGAGAAGGGGGTCACCATCATCGGCCCAGCTacgGTGGGCGGGATCAAGCCCGGCTGCTTTAAGATCGGGAACACCGGCGGGATGCTGGACAACATCCTGGCGTCGAAGCTGTATCGCCCAGGCAGCGTGGCGTACGTGTCCCGCTCGGGCGGCATGTCTAacgagctcaacaacatcatctCTCGCTCCACGGACGGCGTGTACGAGGGCGTGGCCATCGGAGGAGACAGGTATCCCGGCTCCACGTTCATGGACCACGTGCTGCGTTATCAGGACACGCCCGGGGTGAAGATGATCGTGGTGCTCGGAGAGaTCGGCGGTACAGAGGAGTATAAGATCTGTGAGGGCATTAAGGAGGGCAGAATCACTAAACCTGTGGTGTGCTGGTGTATCGGTACCTGCGCTACACTCTTCTCCTCCGAGgtgcaGTTTGGCCACGCGGGTGCGTGCGCTCATCAGACCTCGGAGACGGCTGTGGCGAAGAACATGGCACTGCACGAGGCCGGAGTTTACGTTCCCAGGAGCTTCGACGAACTCGGAGACGTCATCAGgacgGTGTATGATGATCTGGTGGCGAGTGGCGTTATTGTTCCAGCACAGGAAGTTCCCCCTCCCACAGTGCCGATGGACTACTCCTGGGCCAGGgagctggGTCTGATCCGTAAGCCGGCCTCCTTCATGACGAGTATCTGCGATGAGCGGGGACAGGAGCTGATCTACGCCGGCATGCCCATCACTGAGGTCTTCAAGGAGGAGATGGGCTTAGGAGGAGTTCTCGGCCTGCTCTGGTTCCAAAGGAGGTTGCCCCGTTATGCGTGTCAGTTCATTGAGATGTGTCTGATGGTGACGGCGGATCACGGCCCCGCTGTATCCGGAGCTCATAACACCATCGTGTGCGCCCGCGCCGGGAAAGACCTCGTCTCCAGCCTCACATCCGGCCTGCTCACCATCggtgATCGGTTCGGTGGCGCTCTGGACGCAGCTGCTAAACAGTTCAGTAAAGCGTTTGACAGCGGCATGCTGCCCATGGAGTTCGTCAACAAGATGAAGAAGGACGGCAAACTCATCATGGGCATCGGACACCGCGTCAAATCAATTAATAATCCGGATATGAGAGTGCAGATCCTGAAGGACTTCGTGAAGCAGCACTTTCCCGCCACACAGCTGCTGGACTACGCACTTGACGTCGAGAAGATCACCACCTCCAAGAAGCCGAACCTGATCCTGAACGTGGACGGTTTGATCGGCGTGGCGTTTGTGGACTTGTTGCGAACGTGTGGAGGATTCACTCGagacGAGGCGGACGAGTTTGTGGAAATCGGCGCTCTGAACGGGATTTTCGTTCTGGGACGCAGCATGGGCTTCATCGGTCACTACCTGGACCAGAAGCGATTGAAACAGGGCCTGTACCGCCACCCGTGGGACGACATCTCCTACGTGCTTCCTGAGCACATGTCCATGTGACCGTCATGGCCGCCGTGCTTAATTCGGAGTATAACTCGGAGGTGGAGGGAGAATGAAGTGCGCTATTTATATTCACGTGAAAATTAGGGAACACTTATTTAACGTCCGCCGCTgcgtctcacacacatacacacacacacacacacacacacacacacacactccaacagcAAGAACACTGCGATGTCATTACAGCCTGCTAACATGCTAGCATGATAACTAACTGGTTTACTAACTAGTGTAACAACCAGCTGGTTTCATAACTAACTATGTGGCTAATTACTTAACCTAATAACTATTTGTCTTACAAACAGGCTACCAAATAACTAGTCAGCTTGTTAACTAGCTTCTAGTAGTTTCATGACTAACTGTTTTGCTAATTAACTAGCTCAAGAACTAGCAGACTTGCTATCAAGCTACTATGATGAATAGTCAGCTCGATGACTAACTTCCTATCAGTTTCCATTCAGCTAGCATAATTACTAGCTGGTTTCATACTTACCTCTTTTTGTTCCTTGAGTACTAGTAGGCTTGCTTACAATCATGATAACTCACTAGCTGGTTTCATAACAAGCTGTTTCACTAACTAACTGGATTACACTAGCTAATTGGAAGCTAGTTATCACTTTGGCTACTGTGATTACTAGGCGCTTTAAAAACTAACTTTTGCTAATTACCAACCTTGACAACTAGCTTCCTTGATAACTAGTGTAATAACTAGCTGGTTTCATAACTAACTACTTGTTTTGCTAATTATGTTAGCTAATAGGAAGCTAGTTCTCAAGCTGACTAGAGTTCATGGCAGCTTGTTAGCAAGAGTACTAGTTCTTAAGCTAGGTAATTTGCAAAAAACAGTTCGTTATGAAACCAGTTAGTAGGTACACTAGCCGATAAATGACAACTAGTAGTCTTGCTGACCATGATAACTAGCTGGCTTGATAACTAGCTTATTATTTGCTAGTCTACtttgatagctagctagcttgacAAATGTTTAGTGTTATAAATTGTGGAGCAAAGCATTCTGGGTAATTTTTGGTCTTGAAGTTCACTAGTGGACGAGGGTGCGTTTAAAAAGCAGGACTGGGACGCGGCCAAACTGCaagataacttttttttttttttaaagttttttttttttttagatttttttagttTAGCTTATTAATGATAAAATCAGGAAGAACCCGACACAcccacgcgcgcgcgcacacacacacacacacacacatttgtctgcTTTTCTCAGTAATGAACATAATGAAAGCAGCTCACACACTCGCAACTCGTTACTGAAACTGGAAGACGATTCAGTTTGACGTCtgctgttactgtgtgtgtgtgagagagagagagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgagtttgAGTGTTTCAGTAATGTGTTGATGTTACAGCTTCCCTCTTCGCCTCAGTAACGGTTGTATCTCCTTCACCAGCCTGCTGCATGACCTGCCCTCCttctctaatcacacacacacacacacacacacacatcactaacTGTTTATTCTGGTGTTTGGGCGAGACTGGGATTCTCCGCTACAACcctgtttttatgtttctgtatttaaatgtgaaatcaAGCAGCTTTTTTGCtatcttctgttttctttcctttttttaaaaaatatatgctaAAAACTGTAATATTGTAGAATATAATAAAGTCCTTCTTGGTtacctcc

Function

NR:

description
PREDICTED: ATP-citrate synthase-like isoform X1

GO: NA

KEGG:

id description
K01648 ACLY; ATP citrate (pro-S)-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309349.1 True 5255 mRNA 0.51 30 1579297 1602265

Neighbor

gene id symbol gene type direction distance location
LOC117598650 NA coding upstream 13534 1564045 ~ 1565763 (+)
LOC113535294 LOC108273771,LOC108273772 coding upstream 87086 1488171 ~ 1492211 (+)
LOC113535212 NA coding upstream 123777 1404288 ~ 1455520 (+)
LOC113530124 LOC108273772,LOC108273771 coding upstream 226324 1344046 ~ 1352973 (+)
LOC113534962 NA coding upstream 238378 1290300 ~ 1340919 (+)
LOC117598580 NA coding downstream 107684 1709949 ~ 1714497 (+)
LOC113535035 NA coding downstream 236498 1838763 ~ 1844749 (+)
LOC113535036 NA coding downstream 243963 1846228 ~ 1851194 (+)
foxh1 LOC108273808 coding downstream 273389 1875654 ~ 1882978 (+)
stat5b LOC108273804,LOC108431398,LOC107716464,LOC107653267 coding downstream 302943 1905208 ~ 1919420 (+)
G189170 NA non-coding upstream 32715 1545798 ~ 1546582 (+)
G188770 NA non-coding upstream 528677 1046500 ~ 1050620 (+)
G188761 NA non-coding upstream 603432 974797 ~ 975865 (+)
G188749 NA non-coding upstream 654807 924285 ~ 924490 (+)
G188747 NA non-coding upstream 656492 922605 ~ 922805 (+)
G189190 NA non-coding downstream 7561 1609826 ~ 1612220 (+)
G189245 NA non-coding downstream 173340 1775605 ~ 1776432 (+)
G189280 NA non-coding downstream 260937 1863202 ~ 1863652 (+)
G189293 NA non-coding downstream 285385 1887650 ~ 1887870 (+)
LOC117598584 NA non-coding downstream 321719 1923984 ~ 1925704 (+)
LOC113535146 LOC108261429 other upstream 605079 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 794306 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 1356878 137521 ~ 222419 (+)
LOC117598558 NA other downstream 335422 1937687 ~ 1952224 (+)
pyyb NA other downstream 922791 2525056 ~ 2528820 (+)
G189864 NA other downstream 1158428 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 1367860 2970125 ~ 3021609 (+)
G190028 NA other downstream 1636179 3238444 ~ 3239216 (+)

Expression


Co-expression Network