lrrc45 (lrrc45,LOC107736618)


Basic Information

Item Value
gene id lrrc45
gene name lrrc45,LOC107736618
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5446472 ~ 5456359 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309354.1
ATGAGACAGCCACGCCGGCTCAGCTGCAGCGAGGAGGATTTCCGGGCCTACCAGCGGCTGTGTAAGGAAGCAGGCGTGGAGCCCCAGGAGTCGGTCCTGGCTCAGCTGCAGGAGGTCCGGGCTGCGGCTGGTGGCACCAAACTGGACCTGAGCGGCCAGAGCCTGACGGTGGAGTCCTGCTCCATGCTGGGCAAGACACTGCAGAAAGACACGCTTTTCACTGAGCTCATCCTCAGCGACTGCATGCTTAGCGAGGAAGGCACCAAGCTTCTCCTGAAAGGGCTGTGTTCCAACACCACAGTAAAACTGCTGGATCTTAAGGGAAACAACTTAAGAGGTGCGGGAGCAGAGGCTTTGGGGAAGTTGTTGGTGAGAAACAAGACATTGCaaagGCTTGTGTTGGAGTGGAATGCTTTAGGGATGTGGGAAGAAGGCTTTTCCGTATTCTGCGAAGGTCTCGCTTCTAATGGTTCCCTTATTCAGCTAGACCTGCGCAACAACCAGATCAACCACCAGGGAGCAGCTGAGATTGCTCTGGCCTAAAGGAACTCGGTCCTGCGAGAGCTTGACCTGCGGTGGAATAACATTGGCCTGCTGGGCGGCCGCGCTTTGCTAGAAGCTCTACAGCAGAACCGCACTCTCCTCCAGCTCGAGATGGCCGGCAACAACATCCCAAGCGACATCCTCAAAGCCATCGagcAGGCTATGGATCACAATGCAGATAGACATACAACCCTGCGAGAAAGCCACAGCAAGACTCACGTGCTCAGCAAGGAGATCCAGATCCTCAAAGAGGAGAAGAACCGACAGTTTCTAAGTCTGATGGAGACCATTGATAAGCAAAGGGATGAGATGGGGAGGAGCAGCAGAACTTCGTCAGTACGCTTGGGGCAGCTCCAGGAAGCTCTGAACGAACGGAAATCAGCCGTGAATTCCCTCACAGCCAAGTTACAGATGACTGAAGCTGCTCTGGCTCTGTCTGAGCAGAAGGTCAATAACCTGGGAGATCtactgacaaaaacaaaagtggagAGGACTGAACTCATGGACAAGCAATCCAGAGAGATGAAGAAACAACAAGAGGACGGTATTCTTCGAGAAGGGAAGCTTTTGAGGGAAGTGAACAGTCTGACCGAGAAGAACCATCAGCTGAGGAACAAGCTAGAGGAGGCTGAGCGGCGCTGCAAAAGTCAACAAGATCAAATCTTTGAGCTGAAGCAGGAGCTGACCAACTCCACTGCAGAGCTAAAATTACGCTTGTCCCAAGCTGAACAACGCTTGGACATGGAGAAGAGAAGATCCAAACAAGCTCTTGAAGACATGGACAGTTTGCGTCAGAAAGAGGTAGATCATGTCAATAAGCACCtggaggagagtgagagagctcTACAAGACCGTATTCTCAAACTTGAGGGTCAGCGGATCCAGCTGGAGGAGGAGCTGAGCCGAATGAAGGCTGCTATGGTGACCGAGAGGGCTCAGGCAGAAGAGGAGCTCGGGAAAGTGCGTGCACATGTGCGTCTGGAAGAGCAGCAGCATTTGAACAGCATGGAGGAGAAGTTACGGAGCATACGTCAGACACGTGACGAGGCTCAGAGCCACTGCACGCAGCAGAAGCAGATCATCACTGAGCTGCACAGCCGAGTAGGCCAGCAGAGCGTAGAGATGGACACCCTGCGGCGCAGGATAGACGAGCTGCAGCAGGAGCTTGCAGGGAAAGAGCAGGAGAAGGTGGCGGAGGTGACGCGGGTTAAGGTACAGCTGCAGGAGCAGATCGGCCACTTGCAAGCTGAGAGGACAACACAGAGCGGCTTAAAGGAGAAGATCGCTGctttggagagagagataaaggcACTTAGCACCACTCATCGAGAAGCTCTTCTGGACAAAGAAAGCGAGATCTCGTCCCTGCAGGAGCGCCTGCGCATGCGGGAAGCGGAGATCCAACGTATGCGTGAGGACGAGGCGCAGAGAGCCAGTTTTCTTCAGAACGCCATCCTCACATATGTTCAAGGTTCCACTCTTGGACACTACAGCCCAAAAAAATGACCCTCACCCAATCCATAATTAAACCTACTGAATTCCTTTACTGTGTCTTCAGTCACTGAGGTCATTTTGAATGGACAGTAGTATTAACTGAGCAGAATGGACTTGGACTTGGTATAGTCTTGAACACTCATCTGAGGGGCTTCTTCAGTTAAAGCAGCCGTCTTCAGATGACTAAAGATTGTAACCCAAGTCCAGTCGCTTTGACTTACAATGCAATAACACAATTCCTCTGATTTTAGGTTACAACATCGAGGTACAACAAAAAACCacctgttttaaaatgttttaaattcagACTGCATTGGTTTGAgaagttaaaattttaattttttatggatGCAAGATATAATATGTATTGAGCTGACTCTGCATATTCTTATCTCGCTGTggtattgtgttttattcaatacgaacaaattttttttttttttaaacaagtaaaTCATTTTATCATCGTTTACACCGGCCTTCTGGTATCTCAGGAATAGCAAATTGAAAGTAAATCCCCAAATActtttctatgtttttttttttatacttgatTTTATCTTATTTGTTGTATGGACTGGTTTTATACAATAAAATCTTTGCACAAA

Function

symbol description
lrrc45 Orthologous to human LRRC45 (leucine rich repeat containing 45).

NR:

description
leucine-rich repeat-containing protein 45 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309354.1 True 2645 mRNA 0.49 18 5446472 5456359

Neighbor

gene id symbol gene type direction distance location
sgca LOC108273949,LOC108444285 coding downstream 29865 5405182 ~ 5416607 (-)
LOC113527073 LOC108274342,LOC108274341 coding downstream 123997 5312244 ~ 5322475 (-)
trnai-uau_5 NA coding downstream 144267 5302113 ~ 5302205 (-)
tmem101 tmem101 coding downstream 152074 5289712 ~ 5294398 (-)
g6pc3 g6pc3 coding downstream 181115 5256264 ~ 5265357 (-)
trnav-uac_7 NA coding upstream 17039 5473398 ~ 5473470 (-)
prodh2 prodh2,zgc:92040 coding upstream 46064 5502423 ~ 5509397 (-)
eif3c LOC100304733,LOC107693689,LOC107708970,LOC107562013,LOC107689927,LOC107571764 coding upstream 56408 5512767 ~ 5526387 (-)
ppp4cb ppp4c,ppp4cb,LOC105024361,LOC107590569,LOC107690278 coding upstream 72290 5528649 ~ 5539726 (-)
si:ch211-136m16.8 NA coding upstream 84527 5540886 ~ 5545885 (-)
G191413 NA non-coding downstream 1305 5442962 ~ 5445167 (-)
G191279 LOC108273947,LOC107720033,LOC107689922,LOC107561997,LOC107693674 non-coding downstream 59335 5382995 ~ 5387137 (-)
G190885 NA non-coding downstream 695595 4701104 ~ 4750877 (-)
G190849 NA non-coding downstream 779901 4666312 ~ 4666571 (-)
G190829 NA non-coding downstream 849649 4596539 ~ 4596823 (-)
G191424 NA non-coding upstream 26261 5482620 ~ 5484667 (-)
G191463 NA non-coding upstream 209814 5666173 ~ 5667846 (-)
G191464 NA non-coding upstream 211525 5667884 ~ 5669753 (-)
G191468 NA non-coding upstream 232235 5688594 ~ 5689568 (-)
G191490 NA non-coding upstream 283619 5739978 ~ 5740199 (-)
LOC113527048 LOC108274181 other downstream 383054 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 493613 4949163 ~ 4952859 (-)
trnap-cgg_3 NA other downstream 527495 4911734 ~ 4918977 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 2590979 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 2618720 2793046 ~ 2827752 (-)
gdpd3b gdpd3 other upstream 28332 5484691 ~ 5490925 (-)
G191430 NA other upstream 154761 5611120 ~ 5613954 (-)
LOC113527291 LOC108274042 other upstream 312169 5768528 ~ 5791270 (-)
itga3b itga3 other upstream 1090582 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1943641 7400000 ~ 7418378 (-)

Expression


Co-expression Network