LOC117598565 (LOC108262318,LOC108273543)


Basic Information

Item Value
gene id LOC117598565
gene name LOC108262318,LOC108273543
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6108981 ~ 6110127 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309357.1
TATAAATACTAAGTATTAACAGTGCACAAGATGGTGATAGTAAAGTGGAGAGCACTTCACACTCTGATTAGGAGTAACAGTCTGCTGTACAGGAAAGTAGAGTGTGTAAACTGGGAATACAATGTTTCTACGTTTAGTGCACCTTTGTGTCATTTTGACTCTGTGCAGTGTGAGCTCTGGCTTCAGCTGCCGATGGATCAATCTTAGATTCAAGCAGCACCATGCGACATGTTTAGCACTGCTTAGAGAAATGGGAGAGGAAATCAGCATCAATGCCTCCATCCCGGATAACTGGCATCATTGGTTCTTTAACCAAAGCTATTCTCAgCCAGAGAAACAGATCTGGTTCATCATTCAGACTCTGGATGAGGTCTCTCGTTTATTGGAAGATTCAGACTCTGTCTCCTGGAACAAGGACAAGCTGGAAACTTTCTTACATATGCTGGATCTGCAGGCCAACGGACTACGCTCATGTCTtgagcacaaaatgaaaaagaacaaaagattGCCCTTATACTTCAAACAACTAAGAGATTTCACCAAGAACGACAAGCAGGAGAAGAACGAGGCATGGGAGTGGATCAGAAAAGAGCTGCTTCAACTCTTTGGGCTGTTGGACTTTTTCCCTGCTGTCTCTGTGAATCATGCTGAAAATGACAACTAATAATCAGTTGAAATCTTG

Function

GO:

id name namespace
GO:0051607 defense response to virus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309357.1 True 682 mRNA 0.43 5 6108981 6110127

Neighbor

gene id symbol gene type direction distance location
LOC117598474 LOC108262318,LOC108273543 coding downstream 6455 6101081 ~ 6102526 (-)
LOC117598564 LOC108273543,LOC108262318 coding downstream 11076 6091710 ~ 6097905 (-)
zgc:163073 NA coding downstream 97457 6006693 ~ 6011524 (-)
mapta LOC108274153,LOC108441162,LOC103381620 coding downstream 108813 5969736 ~ 6000168 (-)
si:ch211-255p10.4 LOC108273514,LOC108441159,LOC103358360,LOC103033508,LOC107598587,LOC107654020,LOC107557374 coding downstream 176456 5910434 ~ 5932525 (-)
LOC117598661 NA coding upstream 18980 6129107 ~ 6135120 (-)
LOC117598586 LOC108262318,LOC108273543 coding upstream 43663 6153790 ~ 6154882 (-)
LOC117598588 LOC108273543,LOC108262318 coding upstream 52937 6163064 ~ 6164934 (-)
rbp4 rbp4 coding upstream 158746 6268873 ~ 6270634 (-)
fra10ac1 fra10ac1,LOC108274300,LOC107654038,LOC107743956,LOC107664625,LOC107557362 coding upstream 174933 6285060 ~ 6299979 (-)
LOC113527731 NA non-coding downstream 170768 5935539 ~ 5938213 (-)
G191490 NA non-coding downstream 368782 5739978 ~ 5740199 (-)
G191468 NA non-coding downstream 419413 5688594 ~ 5689568 (-)
G191464 NA non-coding downstream 439228 5667884 ~ 5669753 (-)
G191463 NA non-coding downstream 441135 5666173 ~ 5667846 (-)
G191762 NA non-coding upstream 108579 6218706 ~ 6219394 (-)
G191763 NA non-coding upstream 109685 6219812 ~ 6220381 (-)
G191772 kif22 non-coding upstream 141295 6251422 ~ 6252182 (-)
LOC117598466 NA non-coding upstream 149738 6259865 ~ 6261598 (-)
G191786 NA non-coding upstream 180284 6290411 ~ 6290912 (-)
LOC113527291 LOC108274042 other downstream 317711 5768528 ~ 5791270 (-)
G191430 NA other downstream 495027 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 618056 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1045563 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 1156122 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 436814 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1289873 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1471223 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1491091 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2737535 8847662 ~ 8857748 (-)

Expression


Co-expression Network