LOC117598566 (kif20b,LOC108410719)


Basic Information

Item Value
gene id LOC117598566
gene name kif20b,LOC108410719
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10025230 ~ 10028121 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309358.1
ATGTTGCTGAATCTGTTTGTCCTCAAGTCACTGTGTGATGATTTCCAGCAGACTTCCGTGCACGAGTCCTCAGTGCTCTCTACCgagggtgagagagaaaagCGCTTCCCCAAGCCCGAGCTGGAGATCAGCTTCACCCCTCTCAAACCTGACCGTCTGAACATCCGCAGGCCAGGAGACGACGAGTCAGTCACAGTCAAAATCAAACGCACAGCCAGGAAGAGGAAGAGTGCTGAGATAGAGAACTCACTGGAGTCAGAGAACAGGAAGAACATGCGACTTAGAGGAAACTCCAGGGCTAATATACAACGTGTAGAGTCCCCCACAGTGCTTGGCAAAAAGGCCAATCAACTGAAGCAAAAAGATTCTCCTGTTAGCCTGAAAGGCAGTAAAGACAGAACTCTGCAGAAGATTGGTGACTTCATCCAAAGCTCTCCGACCCTCCTAGGGAGCAAAGCTAAAAAGATCATGGCAAAGGTTGCTTTAAAATCTCCAGAGCCAGAGAACAACACCGAGACGAGCAGCAAACCCAAGAGATCAAAACGCAAGCTGTTTAAGACGCAAATCTCCTCCCCTCTTGACATACCTTCACATCCGATCATCGGAATGGATCAAGACAACAAAGAAAGTGATCAtctcattattaaaagaaaacttaGAACAAGAACAGCCAAATGATTTCAGCCTTAAGCAGCTTCCTGGTAGAGTTAATTAGCATGTGGTGAACTTGTGCTGAAAGTTTTAGCAAAGTAGGAGGGCTGATATAGaagattttgtccatatttatgtaaatagtgAGAcgatttttaaatttgtgtatatatatatatatgctttatAGTTGGTCGAGCTTTAATATTGCACTGTTAGACATTGCAAAactgctttctgtttttctttgcatctgatttcttttttatgaaaaaactgaaatgatgGGAAAATACATATTGTATttcaaaatgtcaaatgaaGCTCAGGTGCTCTCGTGGAAGCTGGTTCGTTGTCATTCTGAGGTTAATTCTGTAATAGTCAGGCTCTGCTCAgaacaaaagcatttttaaactattaaatgaGTCTTGTGAA

Function

symbol description
kif20b Enables several functions, including WW domain binding activity; plus-end-directed microtubule motor activity; and protein homodimerization activity. Involved in positive regulation of cell population proliferation and positive regulation of cytokinesis. Located in several cellular components, including microtubule cytoskeleton; midbody; and nuclear lumen.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309358.1 True 1086 mRNA 0.42 6 10025230 10028121

Neighbor

gene id symbol gene type direction distance location
ankrd1b ankrd1 coding upstream 16107 9995500 ~ 10009123 (+)
ppp1r3cb ppp1r3c coding upstream 110093 9909188 ~ 9915137 (+)
mpp3b LOC108273448,LOC108424894,LOC107669230,LOC107594152 coding upstream 122007 9884635 ~ 9903223 (+)
muc13b NA coding upstream 155366 9855734 ~ 9869864 (+)
znf281b znf281 coding upstream 176852 9841383 ~ 9848378 (+)
pank1b pank1,pank1b,LOC108413682,LOC107753437,LOC107683711,LOC107758439,LOC107669213 coding downstream 15788 10043909 ~ 10053194 (+)
slc16a12b slc16a12,slc16a12b,LOC108413683,LOC107753457,LOC107669179,LOC107584144,LOC107758438 coding downstream 25352 10053473 ~ 10062239 (+)
trnal-aag_8 NA coding downstream 36424 10064545 ~ 10064626 (+)
ch25h ch25h,LOC107753436,LOC107683723 coding downstream 48896 10077017 ~ 10078115 (+)
acta2 acta2,LOC107683715,LOC106531354,LOC103382302 coding downstream 69248 10097369 ~ 10101788 (+)
G193646 LOC108273498,LOC107727700 non-coding upstream 198366 9825427 ~ 9826864 (+)
G193645 NA non-coding upstream 200762 9824047 ~ 9824468 (+)
G193544 NA non-coding upstream 244275 9694909 ~ 9780955 (+)
G193542 NA non-coding upstream 371970 9652172 ~ 9653260 (+)
G193509 NA non-coding upstream 437411 9587165 ~ 9587819 (+)
LOC117598497 NA non-coding downstream 116232 10144353 ~ 10148786 (+)
G193842 minpp1 non-coding downstream 196581 10224702 ~ 10226319 (+)
G193828 pvalb2,prv2,LOC108432016,LOC107669167,LOC107753417 non-coding downstream 296835 10324956 ~ 10336247 (+)
G193972 NA non-coding downstream 322078 10350199 ~ 10350620 (+)
G194091 zdhhc4,LOC108274079 non-coding downstream 566108 10594229 ~ 10662463 (+)
arhgap23b LOC108273815 other upstream 333635 9655287 ~ 9691595 (+)
mrpl58 mrpl58 other upstream 509614 9512784 ~ 9515616 (+)
trnaq-cug_15 NA other upstream 511395 9513764 ~ 9513835 (+)
trnaq-cug_14 NA other upstream 512599 9512560 ~ 9512631 (+)
trnaq-cug_13 NA other upstream 512829 9512169 ~ 9512401 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other downstream 616705 10644826 ~ 10646547 (+)
si:ch73-139e5.4 LOC108273417 other downstream 1205469 11233590 ~ 11248213 (+)
trnaq-cug_16 NA other downstream 1258076 11286197 ~ 11286268 (+)
tmem106a tmem106a other downstream 1585778 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 2034687 12062808 ~ 12085359 (+)

Expression


Co-expression Network