ghdc (ghdc)


Basic Information

Item Value
gene id ghdc
gene name ghdc
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1926399 ~ 1935741 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309387.1
AACGAAGACGTAAAAGAGCTactaaagaaaatataaactgTAGATAGAActtactaaagaaaaaaatacaaagattttgaatataaaaagtgtaaaacacaGAGAGCTGCTGTAGTGCCGTCGCCGAAATGACGTCACGACGCCGTTGCGTCAAACCCGGAAGTGTAAATAAGGAAGAGAGGATGTTTTTGTCGCTAAACTCGATGTGGTGTTTTAATTGcggtaattaattaatgaatgaatgagttttaCAGTaactttacagccatggtgtgTTTGTCTCGCAGTGTTTGTGTAATGTGTCTTCTCGGGTGTGGTGTAATGGCGGCGCTAACAGCACGAGCGCTTTTAACCGGAATGGCGCATGACGTGTTCCTGGCTCTCTGCGCCGTAGCTCTGAGCGTCGCCGTCGCGCTCTGGGGCGTGTGTGTGACGGGAGGCAGGCGCAGTGTGTTCAGCGTCGTGCGTCACTACCTGTCCGTTAGGTGCGTGAGTCGAGCGGGGAGACGGCAGAGAGACGCGCTGGAGAGAGACACGCTGTGTGTACGGAGAGTGCAGGAGGAGACGCTGCTCAGACGGCTGAGAGACGcgaaacacacacaatatggaCTCCAGTATCAATTCAGTTCTATCACagACGCAACGGATTTCCGAAAGCGTCATCCCGTCGCCACATACGATCATTACGAGGAGCTCATACGGCGAGTCGCCTCCGGAGAGGAAAAGGCCGTTGTCATGGAGACGCCCATCCTAACGATGACCTCAGGGTCATCAGGATGCAGCAAGATGCTCCTGATCACCAAAGAAACCAACAGTGACTACTTCTTACAGggcgtgtcagtgtgtgtagatgtCATGAGGAAAGCTTTCCCGGGTATAACGAGTCTCCAGACGACCTTCAGACTGTTTTACCCATCGGCTGAACGTTACTCTGAGGCAGGACTTCGAATCGTTGCGACGCCGTTTTATtccgaacacacacaccacctctgcaCGAGTCCCACCGCCATCTTACAGGTGCAGAATGAGCGTGATGCTCTGTACCTTCACCTGCTCTTCGCCCTGAGGGATCGTCATGTCGGCACCCTGGAGTCCAGGTTCTCATCCGCGCTGTTGGACGCCTTCAGACTCCTGGAGGAGCATTGGGAGGAGCTGGTTGATGACGTGGAATCGGGTCGGATCAGCTCCAGGCTTCTTCTGGATGCTCAGCTCAGGTCGGAGCTGGAAAAGCGAACGAAGCCGGATCCTGTCAGAGGCGCAGAACTCAGGACTGCCATCGCCGAGGGCTTCGAAGGCGTCGCTCTCAGACTGTGGCCTCGTCTACACCTGATTCACACCGTCGACTCAGGGCCACATCAGATTTATGGAGAGAGTCTCAGACAGCACTACTGCAAGGGCGTGCCCTTCTATTCTCCGCTCTACGCCGCCTCAGAAGGTCTGATCGGAGTGAATCTTTGGCCGCTCCAGGACAGGAGACGTTACCTGCTCTGTCTTCGCTCCATGTTCTTCGAGTTTCTACCAGAGGAACATTTAgacgcacaacacacactcagcacactCGACACACTGCTCATGGACGAGGTGGAAGAGGGGAAGAACTACGAGCCGATCGTCACCAACGCCTCGGGACTGTTCAGgtaTCGCCTTGGAGACGTAGTGAAAGTGGTCGGGTTTCACAACCAGTGTCCGGTGGTGGAGTTTCTTTACAGaccCAGTCAGACGCTAAACGTTCGAGGTGAAAAAGTGAACGAGGCCTTGTTTTTAGCCGCTCTAAAGAAAGCGGTGACACAGTGGCCCGGCGCTAAACTGGTGGattactgctgtgctgagagTGGAATTCTGGGAGACTCGTCAGGAGGAGCTCAGCCTCATTACCAGGTCTTCGTGGAGCTGCGAGGTGTCAGGAACCTCACCGAGGAGCAGCGGTATAAGttggacGTGTGTCTGCAGGCCGACTGCGCCGTCTACAGGTCGTTCCGGATCAAAGGCAGCATCGGACCAATGAGAGTGCAGCTCGTTAGTGAGGGGGCGTTCCGAGAGCTGAAGAGTCACATGATCTCCTTCTGTCACACCTCCACCAACACGTTTCAGATGCAGCGCGTCATCCGCAGGAAGGAGAACGCCGACTTCCTGCTGAGGAAAACTGTTTCCTGATACGCAGCATGGCATCCTGGGAGAGATGGAGTACACACTCGGACTGACAcacaatgtaaacacacaatCCCACTGTATATAAGAAACGGCGCCGCAATGCTTTCTGGGTAAATTGTGCTCCTGATGTCACTCTACAGTGATGTCACTGATGAAACAGGGTGAGAGGGCAAGGGTACAGAGATTACGGATTTAATAAACAGTTTACGGAAATGCTTATAATTCGACTGCTACAgcgtttgtaaaaaaaaaa
>XM_034309388.1
cttggGAAACGAAGACGTAAAAGAGCTactaaagaaaatataaactgTAGATAGAActtactaaagaaaaaaatacaaagattttgaatataaaaagtgtaaaacacaGAGAGCTGCTGTAGTGCCGTCGCCGAAATGACGTCACGACGCCGTTGCGTCAAACCCGGAAGTGTAAATAAGGAAGAGAGGATGTTTTTGTCGCTAAACTCGATGTGGTGTTTTAATTGcggtaattaattaatgaatgaatgagttttaCAGTaactttacagccatggtgtgTTTGTCTCGCAGTGTTTGTGTAATGTGTCTTCTCGGGTGTGGTGTAATGGCGGCGCTAACAGCACGAGCGCTTTTAACCGGAATGGCGCATGACGTGTTCCTGGCTCTCTGCGCCGTAGCTCTGAGCGTCGCCGTCGCGCTCTGGGGCGTGTGTGTGACGGGAGGCAGGCGCAGTGTGTTCAGCGTCGTGCGTCACTACCTGTCCGTTAGGTGCGTGAGTCGAGCGGGGAGACGGCAGAGAGACGCGCTGGAGAGAGACACGCTGTGTGTACGGAGAGTGCAGGAGGAGACGCTGCTCAGACGGCTGAGAGACGcgaaacacacacaatatggaCTCCAGTATCAATTCAGTTCTATCACagACGCAACGGATTTCCGAAAGCGTCATCCCGTCGCCACATACGATCATTACGAGGAGCTCATACGGCGAGTCGCCTCCGGAGAGGAAAAGGCCGTTGTCATGGAGACGCCCATCCTAACGATGACCTCAGGGTCATCAGGATGCAGCAAGATGCTCCTGATCACCAAAGAAACCAACAGTGACTACTTCTTACAGggcgtgtcagtgtgtgtagatgtCATGAGGAAAGCTTTCCCGGGTATAACGAGTCTCCAGACGACCTTCAGACTGTTTTACCCATCGGCTGAACGTTACTCTGAGGCAGGACTTCGAATCGTTGCGACGCCGTTTTATtccgaacacacacaccacctctgcaCGAGTCCCACCGCCATCTTACAGGTGCAGAATGAGCGTGATGCTCTGTACCTTCACCTGCTCTTCGCCCTGAGGGATCGTCATGTCGGCACCCTGGAGTCCAGGTTCTCATCCGCGCTGTTGGACGCCTTCAGACTCCTGGAGGAGCATTGGGAGGAGCTGGTTGATGACGTGGAATCGGGTCGGATCAGCTCCAGGCTTCTTCTGGATGCTCAGCTCAGGTCGGAGCTGGAAAAGCGAACGAAGCCGGATCCTGTCAGAGGCGCAGAACTCAGGACTGCCATCGCCGAGGGCTTCGAAGGCGTCGCTCTCAGACTGTGGCCTCGTCTACACCTGATTCACACCGTCGACTCAGGGCCACATCAGATTTATGGAGAGAGTCTCAGACAGCACTACTGCAAGGGCGTGCCCTTCTATTCTCCGCTCTACGCCGCCTCAGAAGGTCTGATCGGAGTGAATCTTTGGCCGCTCCAGGACAGGAGACGTTACCTGCTCTGTCTTCGCTCCATGTTCTTCGAGTTTCTACCAGAGGAACATTTAgacgcacaacacacactcagcacactCGACACACTGCTCATGGACGAGGTGGAAGAGGGGAAGAACTACGAGCCGATCGTCACCAACGCCTCGGGACTGTTCAGgtaTCGCCTTGGAGACGTAGTGAAAGTGGTCGGGTTTCACAACCAGTGTCCGGTGGTGGAGTTTCTTTACAGaccCAGTCAGACGCTAAACGTTCGAGGTGAAAAAGTGAACGAGGCCTTGTTTTTAGCCGCTCTAAAGAAAGCGGTGACACAGTGGCCCGGCGCTAAACTGGTGGattactgctgtgctgagagTGGAATTCTGGGTGCAGAAACCAGTGCAAAAACTGAAGATGCATACGTGTCTTGGCTGATCCTGTTTTCctgccaagaacaggaaacaaCGACCAAATAAGGAAAGCGGAAACCAAGCTAAGAGACTCGTCAGGAGGAGCTCAGC

Function

symbol description
ghdc Predicted to enable acid-amino acid ligase activity. Predicted to be active in cytoplasm. Is expressed in proliferative region. Orthologous to human GHDC (GH3 domain containing).

NR:

description
GH3 domain-containing protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309387.1 True 2404 mRNA 0.52 10 1926406 1935741
XM_034309388.1 False 1984 mRNA 0.52 10 1926399 1934902

Neighbor

gene id symbol gene type direction distance location
stat5b LOC108273804,LOC108431398,LOC107716464,LOC107653267 coding upstream 6979 1905208 ~ 1919420 (+)
foxh1 LOC108273808 coding upstream 43421 1875654 ~ 1882978 (+)
LOC113535036 NA coding upstream 75205 1846228 ~ 1851194 (+)
LOC113535035 NA coding upstream 81650 1838763 ~ 1844749 (+)
LOC117598580 NA coding upstream 211902 1709949 ~ 1714497 (+)
LOC113535328 rab5c,LOC108274320,LOC103035226,LOC108431395 coding downstream 50779 1986520 ~ 1991390 (+)
drosha drosha,rnasen,LOC107556767 coding downstream 56676 1992417 ~ 2049358 (+)
LOC113535349 LOC108273450 coding downstream 168584 2104325 ~ 2117109 (+)
kbtbd2 kbtbd2 coding downstream 199438 2135179 ~ 2142952 (+)
avl9 avl9 coding downstream 212155 2147896 ~ 2162573 (+)
LOC117598584 NA non-coding upstream 695 1923984 ~ 1925704 (+)
G189293 NA non-coding upstream 38529 1887650 ~ 1887870 (+)
G189280 NA non-coding upstream 62747 1863202 ~ 1863652 (+)
G189245 NA non-coding upstream 149967 1775605 ~ 1776432 (+)
G189190 NA non-coding upstream 314179 1609826 ~ 1612220 (+)
G189477 NA non-coding downstream 207411 2143152 ~ 2145756 (+)
G189555 NA non-coding downstream 359345 2295086 ~ 2295305 (+)
G189563 NA non-coding downstream 372485 2308226 ~ 2309418 (+)
G189570 med24,LOC107716488,LOC107706820,LOC107660474,LOC107678252,LOC107560528 non-coding downstream 381577 2317318 ~ 2318307 (+)
G189626 NA non-coding downstream 655497 2591238 ~ 2609497 (+)
LOC117598477 NA other upstream 260586 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 952181 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1141408 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 1703980 137521 ~ 222419 (+)
LOC117598558 NA other downstream 1946 1937687 ~ 1952224 (+)
pyyb NA other downstream 589315 2525056 ~ 2528820 (+)
G189864 NA other downstream 824952 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 1034384 2970125 ~ 3021609 (+)
G190028 NA other downstream 1302703 3238444 ~ 3239216 (+)

Expression


Co-expression Network