avl9 (avl9)


Basic Information

Item Value
gene id avl9
gene name avl9
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2147896 ~ 2162573 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309389.1
ggaGCACTGTGAATGAGTCAGCAGTGACGTCATGGTCACGAGGGCGGAAGCGGAAGTTgcctctgtttgtgtttgtccatCGGTAGCAAATCGATGAGGCGAGCAGAAGCGtcggtttttattattttaatcgcGAGTAAAAGTTAGCttttgtctctcacacacaccgtgaTGGAGTCCGGCGGTAAGGACGAGGTTAAAGGAGCCGTGCTGCACATCGTGGTGGTCGGCTTCCACCACAAGAGGGGCTGCCAGgtggagtTCTCGTACCCCCCCATCAGTGATGAAGGTCATGACAGTAACTCGTTGCCTGATCAGTGGAAGTACCTGCCGTTCCTCGCTCTGCCCGACGGAGCGCACAACTATCAGGAGGACACGGTGTTTTTCCTCCTGCCCCCTCTGAGTGAggagatgaagtgtgtgtacgGCGTTTCCTGCTACAGACAGATTGAAGCCAAGATGCTGAAGGTGAGACAGGCTGATGTCACCAGGGAGACGGtgcagaagagtgtgtgtgtgctcagcagAGTGCCGGTGTTCGGTCTGATTGCGGCGAAGCTACAGCTCATCACACATGCCTACTTTGAGGAGAAGGACTTCTCTCAGATCTCCATCCTGAAGgagctgtATGATCATATGAACGGGTCTCTACGGTTCCCAACGCTGGAGGGATCACAGGTGTATCTGGgtttaTCTGCACGAGATTTAATACTGCACTTTAAACACAAGGTTCTGGTTCTGTTCAAGTTGATTCTGCTGGAGAAGAaggtgctgtTCTATGTCTCTCCTGTTAACAGATTGGTGGGGACCCTGATGACGGTTCTCTCACTGTTCcctgGTATGATCGAGCGTGGCCTGTGTGACTCCTCTCACTATCATCCTaaaagcagccaatcagagagtgCTGACATCATCAAGAGTGTAGACCTCACAGGGAACACCGAAGTGTTTGTCGCTGAGCCCACAGTCAACCAATCAGAGGGCTCCACCGGTGCTAAGGTGAATCCGAgctctcctgattggctggataACGAGTGGGAGAGTCTGGACCCGAGCgtgctggaggaggaggaggagaaggagggagaCGGAGGAAGACGTGCACAGACGGAGTGTGTAGAGGCAGAGTCGAACACGCCCATCACTGTTCAGCCCAAAGCCACACCTGCtcagaccaccacacacacacagagtgacacacccacacagagtacacacccacacacacccctgctgGAGGAGGACCAGTGCGGCCTGCCGCCCGCCATCTTCACCAAGggttacCTGTGTTTACCCTACATGGCTCTTCAGCAGCATCACCTGCTCTGTGATGTCAGAGTTCGGGGGTTCGTTGCCGGAGCAACCAACATCCTGTTCCGTCAGCAGAGACACCTGAGTGACGCCATCGTAGacgTAGAGGAGGCCGCGATCCACATCGCCGACCCAGAGTTACGGCGTGTCCTCAATCTGACCACAGCTGACCTGCGTTTCTGCGACTTCctgttgaagagtgtgtgtgagcacagcGAGGACGTGTTTCTGGACGGGACCGGCTGGGAGGGAGGAGACGAATGGATCCGGGCTCAGTTCGCACTCTACATGCACACACTATTAGCGTCCACACTACAGCAAGACAACGAGAAGCTGCTGGCAGATTACGGCTCTGCGTTCGTCTCCGCCTGGAGGATCACACACAACTACAGAGTGTGGTCCAGCACACACCACCCGGCCATCACCGACATCACACCGGGTCACCCGTTCCAGGGTCAGTACAGCGTGGCGGACGTGAAGCTGCGTTTCTCACACTCGGTACAGAACAGCGAAAGAGGGCGGAGACTGGGCAGCGCAGTCATGAGCACCAGCAGGAGTGTGGTGCAAACCGGCAGAGCTGTAGgtcAGTCTGTGGGTGGAGCCTTGAACAGCGCCAAGTCGGTGATGTCATCGTGGTTCTCAACACTTTCTCCGCCAGCGTTAATATCGAACCCACAGTCTACAACGACCAAGCAGTGACTGcctctctcctcacacacacacacacacacacactccgtcaTCCTTCCATGTACTCTTAGATCTAACACACTACTGTTCCAGTGTACCGCGTCCTACTGGTGTGTCTTTactgtctgaccaatcagcatttAGCGCTGCCTCACCCTGATCTGAGTGTGTTTACCTGAAATCAGCGGCCTTAACGTCTGTCAGCGTGAGTTCGGGATGGACTTAATATgtcaaatacatatatatatatatatatatatatatataaattatataaaaatatatatcgtTGTAATTCTCCTGTCCAGTGTGcgcagtctgtctgtctgtctgtctgtctgtctgtctgtatgctGTTATATGCGGATGCATCAGTACCTTTTATTTCAGACCAAGTATGAGTATGAGTGCAGGTTTTTCGGTACTCGTCGATTCCGATACTGATCATAAAACGAGTAACGTACTTATTATAGTATTAATCTGTCAAAGACGtcaaagaacatttaatttaactgtgtttattctcctcatgctgagttttatggtTAAGATGTTGTGATGTTTAAACGGTATCTTTAATAGACAGCGCAGTCCTCGGGTCAGAGGTCGGAGGTCCTCGCACGCTCTATCAAGGAATACTGTTTAAACGGTTTCACCAGGCGGCTTGAAATGCATCCTTAGTGCAACAACCTACACTAGACTTAACGTCCCACAGTGTCACATGGTCTCGGATGTCGGTATTGGAGCATTTTTACGAGTAGgagtaaatgagcacagtgTCGGACCGATACCTGATACCAATATCTGTATCGATGCATCCAttttctgttcctttctttctttcactccaTCTATCATGGCTGTCTGTCTGGAGTCAAAATCTGGTGTCAAATTTGTCCAATCAGAAATGCTGCATATATTAAGATAAcagaataatatattaaattatattcacaaaagaaataaatacatgaactGATATATCTAGCAGATTAGTAGTCGCAACACCTGTAACAGGAAGTGATGATTAATCCCGTGCATTGATCAACTTTGTCAGTAAGCTGTCCGCGTCACTAGTGTTAGCTTTCTccctcacacactacagacattAAACCCCTGAGATAGACTCGCTGTCATGCGGCTGATTTACAGTGTGTTTCGTTGGAATAAAGGTGTGGAGCGTGCACGAGTGGAAGCTCCCGTCACTACACCACTTTCCGGCGTCCCAGAATCTCCAAATCACTCACAGAAGTGCGTTCTTCGAAGTGCCCTCTCTTCACGCTGTAGCGTACAGGGCCTGCTTACGTAGCCGCAGTGTAACGACTGCTAGCATGTAGCTTGGCATGTGAGTGGGCCATTAGCCATGAGATTTaactgttcatttaaaaatggtCCAAGGGTGGAGCTTAAGTCAAAtctgatcatgtgacatcaccactAGGAGTTCACTAACCAGTTACCGTAGCCCTGCGCTAATGTTATCTACCGTTAATGTGCTGTGTAGCTGTTCTGcgtcctgattggctgctccaGCGCAAGTCGAGCTCCACCACTGTTGACCCTGGGACGCCCTGATCGTGATCTGGGACTGTTGGGTTTCATCCTTCTGATCTGTTTACTTGATTTTTACGATGTACATCCACATGCTCCATCCGCTTAGCTgtacaatttgtttttaaagagtGGTTTCATTtgtttagaggttttttttttttaattgtttgagTGGATTTTGCCgtgtctttgtttttattttcaatttcagCATTGTTTTACATGTTCCTTTGATGCACCTTcagttattttagtttttagtcTTAATAAATTGGAAAGAATTATT
>XM_034309390.1
ggaGCACTGTGAATGAGTCAGCAGTGACGTCATGGTCACGAGGGCGGAAGCGGAAGTTgcctctgtttgtgtttgtccatCGGTAGCAAATCGATGAGGCGAGCAGAAGCGtcggtttttattattttaatcgcGAGTAAAAGTTAGCttttgtctctcacacacaccgtgaTGGAGTCCGGCGGTAAGGACGAGGTTAAAGGAGCCGTGCTGCACATCGTGGTGGTCGGCTTCCACCACAAGAGGGGCTGCCAGgtggagtTCTCGTACCCCCCCATCAGTGATGAAGGTCATGACAGTAACTCGTTGCCTGATCAGTGGAAGTACCTGCCGTTCCTCGCTCTGCCCGACGGAGCGCACAACTATCAGGAGGACACGGTGTTTTTCCTCCTGCCCCCTCTGAGTGAggagatgaagtgtgtgtacgGCGTTTCCTGCTACAGACAGATTGAAGCCAAGATGCTGAAGGTGAGACAGGCTGATGTCACCAGGGAGACGGtgcagaagagtgtgtgtgtgctcagcagAGTGCCGGTGTTCGGTCTGATTGCGGCGAAGCTACAGCTCATCACACATGCCTACTTTGAGGAGAAGGACTTCTCTCAGATCTCCATCCTGAAGgagctgtATGATCATATGAACGGGTCTCTACGGTTCCCAACGCTGGAGGGATCACAGGTGTATCTGGgtttaTCTGCACGAGATTTAATACTGCACTTTAAACACAAGGTTCTGGTTCTGTTCAAGTTGATTCTGCTGGAGAAGAaggtgctgtTCTATGTCTCTCCTGTTAACAGATTGGTGGGGACCCTGATGACGGTTCTCTCACTGTTCcctgGTATGATCGAGCGTGGCCTGTGTGACTCCTCTCACTATCATCCTaaaagcagccaatcagagagtgCTGACATCATCAAGAGTGTAGACCTCACAGGGAACACCGAAGTGTTTGTCGCTGAGCCCACAGTCAACCAATCAGAGGGCTCCACCGGTGCTAAGGTGAATCCGAgctctcctgattggctggataACGAGTGGGAGAGTCTGGACCCGAGCgtgctggaggaggaggaggagaaggagggagaCGGAGGAAGACGTGCACAGACGGAGTGTGTAGAGGCAGAGTCGAACACGCCCATCACTGTTCAGCCCAAAGCCACACCTGCtcagaccaccacacacacacagagtgacacacccacacagagtacacacccacacacacccctgctgGAGGAGGACCAGTGCGGCCTGCCGCCCGCCATCTTCACCAAGggttacCTGTGTTTACCCTACATGGCTCTTCAGCAGCATCACCTGCTCTGTGATGTCAGAGTTCGGGGGTTCGTTGCCGGAGCAACCAACATCCTGTTCCGTCAGCAGAGACACCTGAGTGACGCCATCGTAGacgTAGAGGAGGCCGCGATCCACATCGCCGACCCAGAGTTACGGCGTGTCCTCAATCTGACCACAGCTGACCTGCGTTTCTGCGACTTCctgttgaagagtgtgtgtgagcacagcGAGGACGTGTTTCTGGACGGGACCGGCTGGGAGGGAGGAGACGAATGGATCCGGGCTCAGTTCGCACTCTACATGCACACACTATTAGCGTCCACACTACAGCAAGACAACGAGAAGCTGCTGGCAGATTACGGCTCTGCGTTCGTCTCCGCCTGGAGGATCACACACAACTACAGAGTGTGGTCCAGCACACACCACCCGGCCATCACCGACATCACACCGGGTCACCCGTTCCAGGGTCAGTACAGCGTGGCGGACGTGAAGCTGCGTTTCTCACACTCGGTACAGAACAGCGAAAGAGGGCGGAGACTGGGCAGCGCAGTCATGAGCACCAGCAGGAGTGTGGTGCAAACCGGCAGAGCTgtcAGTCTGTGGGTGGAGCCTTGAACAGCGCCAAGTCGGTGATGTCATCGTGGTTCTCAACACTTTCTCCGCCAGCGTTAATATCGAACCCACAGTCTACAACGACCAAGCAGTGACTGcctctctcctcacacacacacacacacacacactccgtcaTCCTTCCATGTACTCTTAGATCTAACACACTACTGTTCCAGTGTACCGCGTCCTACTGGTGTGTCTTTactgtctgaccaatcagcatttAGCGCTGCCTCACCCTGATCTGAGTGTGTTTACCTGAAATCAGCGGCCTTAACGTCTGTCAGCGTGAGTTCGGGATGGACTTAATATgtcaaatacatatatatatatatatatatatatatataaattatataaaaatatatatcgtTGTAATTCTCCTGTCCAGTGTGcgcagtctgtctgtctgtctgtctgtctgtctgtctgtatgctGTTATATGCGGATGCATCAGTACCTTTTATTTCAGACCAAGTATGAGTATGAGTGCAGGTTTTTCGGTACTCGTCGATTCCGATACTGATCATAAAACGAGTAACGTACTTATTATAGTATTAATCTGTCAAAGACGtcaaagaacatttaatttaactgtgtttattctcctcatgctgagttttatggtTAAGATGTTGTGATGTTTAAACGGTATCTTTAATAGACAGCGCAGTCCTCGGGTCAGAGGTCGGAGGTCCTCGCACGCTCTATCAAGGAATACTGTTTAAACGGTTTCACCAGGCGGCTTGAAATGCATCCTTAGTGCAACAACCTACACTAGACTTAACGTCCCACAGTGTCACATGGTCTCGGATGTCGGTATTGGAGCATTTTTACGAGTAGgagtaaatgagcacagtgTCGGACCGATACCTGATACCAATATCTGTATCGATGCATCCAttttctgttcctttctttctttcactccaTCTATCATGGCTGTCTGTCTGGAGTCAAAATCTGGTGTCAAATTTGTCCAATCAGAAATGCTGCATATATTAAGATAAcagaataatatattaaattatattcacaaaagaaataaatacatgaactGATATATCTAGCAGATTAGTAGTCGCAACACCTGTAACAGGAAGTGATGATTAATCCCGTGCATTGATCAACTTTGTCAGTAAGCTGTCCGCGTCACTAGTGTTAGCTTTCTccctcacacactacagacattAAACCCCTGAGATAGACTCGCTGTCATGCGGCTGATTTACAGTGTGTTTCGTTGGAATAAAGGTGTGGAGCGTGCACGAGTGGAAGCTCCCGTCACTACACCACTTTCCGGCGTCCCAGAATCTCCAAATCACTCACAGAAGTGCGTTCTTCGAAGTGCCCTCTCTTCACGCTGTAGCGTACAGGGCCTGCTTACGTAGCCGCAGTGTAACGACTGCTAGCATGTAGCTTGGCATGTGAGTGGGCCATTAGCCATGAGATTTaactgttcatttaaaaatggtCCAAGGGTGGAGCTTAAGTCAAAtctgatcatgtgacatcaccactAGGAGTTCACTAACCAGTTACCGTAGCCCTGCGCTAATGTTATCTACCGTTAATGTGCTGTGTAGCTGTTCTGcgtcctgattggctgctccaGCGCAAGTCGAGCTCCACCACTGTTGACCCTGGGACGCCCTGATCGTGATCTGGGACTGTTGGGTTTCATCCTTCTGATCTGTTTACTTGATTTTTACGATGTACATCCACATGCTCCATCCGCTTAGCTgtacaatttgtttttaaagagtGGTTTCATTtgtttagaggttttttttttttaattgtttgagTGGATTTTGCCgtgtctttgtttttattttcaatttcagCATTGTTTTACATGTTCCTTTGATGCACCTTcagttattttagtttttagtcTTAATAAATTGGAAAGAATTATT

Function

symbol description
avl9 Predicted to be located in recycling endosome. Predicted to be active in cytoplasm. Orthologous to human AVL9 (AVL9 cell migration associated).

NR:

description
PREDICTED: late secretory pathway protein AVL9 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309389.1 True 3841 mRNA 0.49 16 2147896 2162573
XM_034309390.1 False 3837 mRNA 0.49 16 2147896 2162573

Neighbor

gene id symbol gene type direction distance location
kbtbd2 kbtbd2 coding upstream 4944 2135179 ~ 2142952 (+)
LOC113535349 LOC108273450 coding upstream 30787 2104325 ~ 2117109 (+)
drosha drosha,rnasen,LOC107556767 coding upstream 98538 1992417 ~ 2049358 (+)
LOC113535328 rab5c,LOC108274320,LOC103035226,LOC108431395 coding upstream 156506 1986520 ~ 1991390 (+)
ghdc ghdc coding upstream 212155 1926399 ~ 1935741 (+)
lsm5 lsm5 coding downstream 601 2163174 ~ 2165781 (+)
irf9 irf9 coding downstream 10966 2173539 ~ 2184198 (+)
lrrc3ca lrrc3c,lrrc3ca,LOC107598050,LOC107716457,LOC107660473,LOC107678436 coding downstream 108059 2270632 ~ 2287054 (+)
LOC113547531 NA coding downstream 139660 2302233 ~ 2304287 (+)
top2a top2a,LOC107598028,LOC107660475 coding downstream 184472 2347045 ~ 2361095 (+)
G189477 NA non-coding upstream 2140 2143152 ~ 2145756 (+)
LOC117598584 NA non-coding upstream 222192 1923984 ~ 1925704 (+)
G189293 NA non-coding upstream 260026 1887650 ~ 1887870 (+)
G189280 NA non-coding upstream 284244 1863202 ~ 1863652 (+)
G189245 NA non-coding upstream 371464 1775605 ~ 1776432 (+)
G189555 NA non-coding downstream 132513 2295086 ~ 2295305 (+)
G189563 NA non-coding downstream 145653 2308226 ~ 2309418 (+)
G189570 med24,LOC107716488,LOC107706820,LOC107660474,LOC107678252,LOC107560528 non-coding downstream 154745 2317318 ~ 2318307 (+)
G189626 NA non-coding downstream 428665 2591238 ~ 2609497 (+)
G189678 NA non-coding downstream 443310 2605883 ~ 2608078 (+)
LOC117598558 NA other upstream 195672 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 482083 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1173678 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1362905 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 1925477 137521 ~ 222419 (+)
pyyb NA other downstream 362483 2525056 ~ 2528820 (+)
G189864 NA other downstream 598120 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 807552 2970125 ~ 3021609 (+)
G190028 NA other downstream 1075871 3238444 ~ 3239216 (+)
G190212 NA other downstream 1238694 3401267 ~ 3405009 (+)

Expression


Co-expression Network