LOC113535291 (LOC108273550)


Basic Information

Item Value
gene id LOC113535291
gene name LOC108273550
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1776804 ~ 1804114 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309392.1
CACAGGATCACCGGCTGGGACAGGACGGACTTTTCACTAAcggcgacacacacacacacacacacacacacacacacacacagttttgacTGAATGGTGTGCGATTAAATACTCTAAATGTCCTGTCAGGAAGAGAAAACGGACTGCTCGAGCCAAACCGGTATGAGTGGTCTGTTGGGTGCGGCGTGTGAGGCGTCAGAGGTGAAACGGAAGCGAAAGCAGCGAACTCTAACGCTGTGTGACGTGTGTAATATTCAGCTGAACTCCAGCGCTCAGGCTCAGATCCACTACAACGGCAAAACTCACCAGCGCCGACTACGGCAAGCCAACAGGGCCAAAACCAGCAGCGGAGCCAGAAGCAGCACAGTGATGGGGATAAATGAGATATCGAGCAGCTCATGCGAAAGAGAGGAAAGAGCAATAATTCCAGATAATAATtcagagacgagagagagagagagagagagagagagagagaaagGAAGTCCAGCCCAGGGAGGTGCTTTgctgacatcacttcctgttcagcCCCAGATGGACCTGAAGCACTTTCTGCCTCTGAGAGTAAACAGCTCGTCGCACCTCGGCCTCTTCTCCAACTTtaacgtgatGGATCCTGTTCAGAAGGCGGTTATAAGCCACACTTTCAGCATCGCACAAGcgctgaagaaaaaacaaatcatcACCTGCAATATCTGTCACCTGCGCTTCAACTCAACAAACCAAGCGGAAGCGCACTACAAAGGGCACAAGCATGCACGCAAACTCAAAGCCATAGACAAGCTGAAGAACAAGCAAAGGATTCTGGGAAAGTCTGcgtggagggagagagagagaaagaaactaaTAAAAGGAGAGATGGAGGACAGCAAGGGGAAGGACGGCAGCCTGTCAgagaggacagCACCAATCTGTTCATCACAGGCATCAAACCCAGAAGACGAACGTGTTCAGGGGATCTCAGTCACGCTAACGCCCGTTTCACACACTTCTGCCTCAAAAAGGCTGTGTGAGAGCAAGTGTATCCCAGAATCCCCTGCTCCGGTGCCTCCAGCCGACCCGAAACGCTTGTGCGACTCTGAACCCGTAGTAAAGGGATACAGAAACCGGAGGAAATGCAGCAAGAGTCTTCACTGTCCTGTTTGTAAAGTGACCGTCAACTCTGGCTCGCAGCTTGAGGATCATTATAAAGGCTCTAAACACAGACTGATGCTCGGGGGTCGCTGCACGTTGCCACGAAAACGGGGCGGGAAAGTGGATTCATCCCGCGACAAGCCCCGCCCTAAACGGCCGTCCATCAACTCCGCCTCCACCGACCAATCACATCACTGCAATGTGTGTGATATAGACGTCAACTCAGAAGCTCAGCTTCAGCaacacATGCGCAGCAGGAGACACCGAGACCGAGCGACTGGAAAATCACATAAAACAAAGTTCAGCCCGTACATCAACAACTCAGCCCACGCAGTGTTACCGACCAAGCTCACACACCAGAAGGAACTCTCCAGAACGTTGACCTCCAGCTTCCTAACGTCGGCTCTCACCCCCGCCACCCTGTGCGCCATGGCAACCGGGCCTTTGTCTCTAAGCCACGTTCATCCGCCAGCCGCCATAATCCACGCCCCTCTGTTTAGCCCCACCCTCTTTAGACCCGCCCCCACCCTGAGGGCGGCTCACGGTCCAATCGTCTTCTCTCCTTACTAAAGAGACGGacattttcagacatttcacAGGAAGCTGCTCAGGAACAGAAATACGCAGAAACACAGATTACGCTGCGggatgtttaatatttacttctaaatacaaaacatttaataaaaaaaaaaaaaattctggaaataaaaaagaattactgttactgtcAAGCACTCGTTTGGGATTCTCTCTGTAGCGTTTCTGCTCGAGtctaaatacaataaataaaaaattaggaCGTTTTTAGAAGAATGTAAAgcaaatattacagaaaaatagaaaatatatacaatatataaaattttaaaattattttaaaataataaagaacaatTAAGGAAATTTTTTGTggaatatttatagaaaaagtAAAGTTTTAACAGCAAATCTATGAAGgaaa
>XM_034309393.1
CACAGGATCACCGGCTGGGACAGGACGGACTTTTCACTAAcggcgacacacacacacacacacacacacacacacacacacagttttgacTGAATGGTGTGCGATTAAATACTCTAAATGTCCTGTCAGGAAGAGAAAACGGACTGCTCGAGCCAAACCGGTATGAGTGGTCTGTTGGGTGCGGCGTGTGAGGCGTCAGAGGTGAAACGGAAGCGAAAGCAGCGAACTCTAACGCTGTGTGACGTGTGTAATATTCAGCTGAACTCCAGCGCTCAGGCTCAGATCCACTACAACGGCAAAACTCACCAGCGCCGACTACGGCAAGCCAACAGGGCCAAAACCAGCAGCGGAGCCAGAAGCAGCACAGTGATGGGGATAAATGAGATATCGAGCAGCTCATGCGAAAGAGAGGAAAGAGCAATAATTCCAGATAATAATtcagagacgagagagagagagagagagagagagagagagaaagGAAGTCCAGCCCAGGGAGGTGCTTTgctgacatcacttcctgttcagcCCCAGATGGACCTGAAGCACTTTCTGCCTCTGAGAGTAAACAGCTCGTCGCACCTCGGCCTCTTCTCCAACTTtaacgtgatGGATCCTGTTCAGAAGGCGGTTATAAGCCACACTTTCAGCATCGCACAAGcgctgaagaaaaaacaaatcatcACCTGCAATATCTGTCACCTGCGCTTCAACTCAACAAACCAAGCGGAAGCGCACTACAAAGGGCACAAGCATGCACGCAAACTCAAAGCCATAGACAAGCTGAAGAACAAGCAAAGGATTCTGGGAAAGTCTGcgtggagggagagagagagaaagaaactaaTAAAAGGAGAGATGGAGGACAGCAAGGGGAAGGACGGCAGCCTGTCAgagaggacagCACCAATCTGTTCATCACAGGCATCAAACCCAGAAGACGAACGTGTTCAGGGGATCTCAGTCACGCTAACGCCCGTTTCACACACTTCTGCCTCAAAAAGGCTGTGTGAGAGCAAGTGTATCCCAGAATCCCCTGCTCCGGTGCCTCCAGCCGACCCGAAACGCTTGTGCGACTCTGAACCCGTAGTAAAGGGATACAGAAACCGGAGGAAATGCAGCAAGAGTCTTCACTGTCCTGTTTGTAAAGTGACCGTCAACTCTGGCTCGCAGCTTGAGGATCATTATAAAGGCTCTAAACACAGACTGATGCTCGGGGGTCGCTGCACGTTGCCACGAAAACGGGGCGGGAAAGTGGATTCATCCCGCGACAAGCCCCGCCCTAAACGGCCGTCCATCAACTCCGCCTCCACCGACCAATCACATCACTGCAATcacATGCGCAGCAGGAGACACCGAGACCGAGCGACTGGAAAATCACATAAAACAAAGTTCAGCCCGTACATCAACAACTCAGCCCACGCAGTGTTACCGACCAAGCTCACACACCAGAAGGAACTCTCCAGAACGTTGACCTCCAGCTTCCTAACGTCGGCTCTCACCCCCGCCACCCTGTGCGCCATGGCAACCGGGCCTTTGTCTCTAAGCCACGTTCATCCGCCAGCCGCCATAATCCACGCCCCTCTGTTTAGCCCCACCCTCTTTAGACCCGCCCCCACCCTGAGGGCGGCTCACGGTCCAATCGTCTTCTCTCCTTACTAAAGAGACGGacattttcagacatttcacAGGAAGCTGCTCAGGAACAGAAATACGCAGAAACACAGATTACGCTGCGggatgtttaatatttacttctaaatacaaaacatttaataaaaaaaaaaaaaattctggaaataaaaaagaattactgttactgtcAAGCACTCGTTTGGGATTCTCTCTGTAGCGTTTCTGCTCGAGtctaaatacaataaataaaaaattaggaCGTTTTTAGAAGAATGTAAAgcaaatattacagaaaaatagaaaatatatacaatatataaaattttaaaattattttaaaataataaagaacaatTAAGGAAATTTTTTGTggaatatttatagaaaaagtAAAGTTTTAACAGCAAATCTATGAAGgaaa
>XM_034309394.1
CACAGGATCACCGGCTGGGACAGGACGGACTTTTCACTAAcggcgacacacacacacacacacacacacacacacacacacagttttgacTGAATGGTGTGCGATTAAATACTCTAAATGTCCTGTCAGGAAGAGAAAACGGACTGCTCGAGCCAAACCGGTATGAGTGGTCTGTTGGGTGCGGCGTGTGAGGCGTCAGAGGTGAAACGGAAGCGAAAGCAGCGAACTCTAACGCTGTGTGACGTGTGTAATATTCAGCTGAACTCCAGCGCTCAGGCTCAGATCCACTACAACGGCAAAACTCACCAGCGCCGACTACGGCAAGCCAACAGGGCCAAAACCAGCAGCGGAGCCAGAAGCAGCACAGTGATGGGGATAAATGAGATATCGAGCAGCTCATGCGAAAGAGAGGAAAGAGCAATAATTCCAGATAATAATtcagagacgagagagagagagagagagagagagagagagaaagGAAGTCCAGCCCAGGGAGGTGCTTTgctgacatcacttcctgttcagcCCCAGATGGACCTGAAGCACTTTCTGCCTCTGAGAGTAAACAGCTCGTCGCACCTCGGCCTCTTCTCCAACTTtaacgtgAACCAAGCGGAAGCGCACTACAAAGGGCACAAGCATGCACGCAAACTCAAAGCCATAGACAAGCTGAAGAACAAGCAAAGGATTCTGGGAAAGTCTGcgtggagggagagagagagaaagaaactaaTAAAAGGAGAGATGGAGGACAGCAAGGGGAAGGACGGCAGCCTGTCAgagaggacagCACCAATCTGTTCATCACAGGCATCAAACCCAGAAGACGAACGTGTTCAGGGGATCTCAGTCACGCTAACGCCCGTTTCACACACTTCTGCCTCAAAAAGGCTGTGTGAGAGCAAGTGTATCCCAGAATCCCCTGCTCCGGTGCCTCCAGCCGACCCGAAACGCTTGTGCGACTCTGAACCCGTAGTAAAGGGATACAGAAACCGGAGGAAATGCAGCAAGAGTCTTCACTGTCCTGTTTGTAAAGTGACCGTCAACTCTGGCTCGCAGCTTGAGGATCATTATAAAGGCTCTAAACACAGACTGATGCTCGGGGGTCGCTGCACGTTGCCACGAAAACGGGGCGGGAAAGTGGATTCATCCCGCGACAAGCCCCGCCCTAAACGGCCGTCCATCAACTCCGCCTCCACCGACCAATCACATCACTGCAATGTGTGTGATATAGACGTCAACTCAGAAGCTCAGCTTCAGCaacacATGCGCAGCAGGAGACACCGAGACCGAGCGACTGGAAAATCACATAAAACAAAGTTCAGCCCGTACATCAACAACTCAGCCCACGCAGTGTTACCGACCAAGCTCACACACCAGAAGGAACTCTCCAGAACGTTGACCTCCAGCTTCCTAACGTCGGCTCTCACCCCCGCCACCCTGTGCGCCATGGCAACCGGGCCTTTGTCTCTAAGCCACGTTCATCCGCCAGCCGCCATAATCCACGCCCCTCTGTTTAGCCCCACCCTCTTTAGACCCGCCCCCACCCTGAGGGCGGCTCACGGTCCAATCGTCTTCTCTCCTTACTAAAGAGACGGacattttcagacatttcacAGGAAGCTGCTCAGGAACAGAAATACGCAGAAACACAGATTACGCTGCGggatgtttaatatttacttctaaatacaaaacatttaataaaaaaaaaaaaaattctggaaataaaaaagaattactgttactgtcAAGCACTCGTTTGGGATTCTCTCTGTAGCGTTTCTGCTCGAGtctaaatacaataaataaaaaattaggaCGTTTTTAGAAGAATGTAAAgcaaatattacagaaaaatagaaaatatatacaatatataaaattttaaaattattttaaaataataaagaacaatTAAGGAAATTTTTTGTggaatatttatagaaaaagtAAAGTTTTAACAGCAAATCTATGAAGgaaa
>XM_034309395.1
CACAGGATCACCGGCTGGGACAGGACGGACTTTTCACTAAcggcgacacacacacacacacacacacacacacacacacacagttttgacTGAATGGTGTGCGATTAAATACTCTAAATGTCCTGTCAGGAAGAGAAAACGGACTGCTCGAGCCAAACCGGTATGAGTGGTCTGTTGGGTGCGGCGTGTGAGGCGTCAGAGGTGAAACGGAAGCGAAAGCAGCGAACTCTAACGCTGTGTGACGTGTGTAATATTCAGCTGAACTCCAGCGCTCAGGCTCAGATCCACTACAACGGCAAAACTCACCAGCGCCGACTACGGCAAGCCAACAGGGCCAAAACCAGCAGCGGAGCCAGAAGCAGCACAGGAAGTCCAGCCCAGGGAGGTGCTTTgctgacatcacttcctgttcagcCCCAGATGGACCTGAAGCACTTTCTGCCTCTGAGAGTAAACAGCTCGTCGCACCTCGGCCTCTTCTCCAACTTtaacgtgatGGATCCTGTTCAGAAGGCGGTTATAAGCCACACTTTCAGCATCGCACAAGcgctgaagaaaaaacaaatcatcACCTGCAATATCTGTCACCTGCGCTTCAACTCAACAAACCAAGCGGAAGCGCACTACAAAGGGCACAAGCATGCACGCAAACTCAAAGCCATAGACAAGCTGAAGAACAAGCAAAGGATTCTGGGAAAGTCTGcgtggagggagagagagagaaagaaactaaTAAAAGGAGAGATGGAGGACAGCAAGGGGAAGGACGGCAGCCTGTCAgagaggacagCACCAATCTGTTCATCACAGGCATCAAACCCAGAAGACGAACGTGTTCAGGGGATCTCAGTCACGCTAACGCCCGTTTCACACACTTCTGCCTCAAAAAGGCTGTGTGAGAGCAAGTGTATCCCAGAATCCCCTGCTCCGGTGCCTCCAGCCGACCCGAAACGCTTGTGCGACTCTGAACCCGTAGTAAAGGGATACAGAAACCGGAGGAAATGCAGCAAGAGTCTTCACTGTCCTGTTTGTAAAGTGACCGTCAACTCTGGCTCGCAGCTTGAGGATCATTATAAAGGCTCTAAACACAGACTGATGCTCGGGGGTCGCTGCACGTTGCCACGAAAACGGGGCGGGAAAGTGGATTCATCCCGCGACAAGCCCCGCCCTAAACGGCCGTCCATCAACTCCGCCTCCACCGACCAATCACATCACTGCAATGTGTGTGATATAGACGTCAACTCAGAAGCTCAGCTTCAGCaacacATGCGCAGCAGGAGACACCGAGACCGAGCGACTGGAAAATCACATAAAACAAAGTTCAGCCCGTACATCAACAACTCAGCCCACGCAGTGTTACCGACCAAGCTCACACACCAGAAGGAACTCTCCAGAACGTTGACCTCCAGCTTCCTAACGTCGGCTCTCACCCCCGCCACCCTGTGCGCCATGGCAACCGGGCCTTTGTCTCTAAGCCACGTTCATCCGCCAGCCGCCATAATCCACGCCCCTCTGTTTAGCCCCACCCTCTTTAGACCCGCCCCCACCCTGAGGGCGGCTCACGGTCCAATCGTCTTCTCTCCTTACTAAAGAGACGGacattttcagacatttcacAGGAAGCTGCTCAGGAACAGAAATACGCAGAAACACAGATTACGCTGCGggatgtttaatatttacttctaaatacaaaacatttaataaaaaaaaaaaaaattctggaaataaaaaagaattactgttactgtcAAGCACTCGTTTGGGATTCTCTCTGTAGCGTTTCTGCTCGAGtctaaatacaataaataaaaaattaggaCGTTTTTAGAAGAATGTAAAgcaaatattacagaaaaatagaaaatatatacaatatataaaattttaaaattattttaaaataataaagaacaatTAAGGAAATTTTTTGTggaatatttatagaaaaagtAAAGTTTTAACAGCAAATCTATGAAGgaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309392.1 True 2098 mRNA 0.48 10 1776804 1804114
XM_034309393.1 False 2056 mRNA 0.48 10 1776804 1804114
XM_034309394.1 False 1987 mRNA 0.48 9 1776804 1804114
XM_034309395.1 False 1984 mRNA 0.48 9 1776804 1804114

Neighbor

gene id symbol gene type direction distance location
LOC117598490 NA coding downstream 126257 1622680 ~ 1650547 (-)
LOC113535205 NA coding downstream 157390 1613996 ~ 1619414 (-)
LOC113535098 LOC108273774 coding downstream 703578 1065924 ~ 1073226 (-)
LOC113535162 NA coding downstream 820963 944848 ~ 955841 (-)
LOC113535267 rnd2,LOC108273785,LOC103364924,LOC102195949 coding downstream 833477 926188 ~ 943327 (-)
si:ch211-217a12.1 si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 coding upstream 8453 1812567 ~ 1822814 (-)
oplah oplah coding upstream 84702 1888816 ~ 1903996 (-)
kcnh4b LOC108273803,LOC103352817 coding upstream 137582 1941696 ~ 1982877 (-)
LOC113535332 LOC108274177 coding upstream 248670 2052784 ~ 2078967 (-)
buc2l LOC108273451 coding upstream 315088 2119202 ~ 2123272 (-)
G189233 NA non-coding downstream 69098 1707364 ~ 1707706 (-)
LOC117598583 NA non-coding downstream 75371 1701050 ~ 1701433 (-)
G189200 NA non-coding downstream 174555 1570108 ~ 1602249 (-)
G189206 NA non-coding downstream 188204 1586131 ~ 1588600 (-)
G189174 NA non-coding downstream 228082 1547696 ~ 1548722 (-)
G189354 NA non-coding upstream 20168 1824282 ~ 1824948 (-)
G189381 NA non-coding upstream 83470 1887584 ~ 1887870 (-)
G189385 NA non-coding upstream 100748 1904862 ~ 1906435 (-)
G189386 NA non-coding upstream 115356 1919470 ~ 1923367 (-)
G189388 NA non-coding upstream 119912 1924026 ~ 1925701 (-)
LOC113534879 NA other downstream 3284 1760834 ~ 1773520 (-)
G189199 NA other downstream 205731 1568286 ~ 1571073 (-)
G189180 NA other downstream 211544 1564890 ~ 1565260 (-)
c12h10orf88 c13h10orf88 other downstream 942044 748738 ~ 834760 (-)
LOC117598518 NA other downstream 1138762 636497 ~ 638042 (-)
ppp1r16a ppp1r16a other upstream 20921 1825035 ~ 1869993 (-)
LOC113547489 NA other upstream 390230 2194344 ~ 2210979 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 787123 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 981967 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 988932 2793046 ~ 2827752 (-)

Expression


Co-expression Network