heatr1 (heatr1,LOC107560530,LOC107675669,LOC102797743)


Basic Information

Item Value
gene id heatr1
gene name heatr1,LOC107560530,LOC107675669,LOC102797743
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3938282 ~ 3971885 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309403.1
CATGTGAGAGCTTAAAGGGAGACTTACAGAAAGTAGTTGAGATGACGTCATTAGCACACCAGTTGAAGCGGCTGGCTTTGCCGCAGAGTGACCCGAGTCTGCTGAGCCGCAGGCAGGTCGCCTCGCTGCTGTTCGAGCCTAAAGATGCTGCCAGCATGGACAGGAGCACCATCTACGCCCTGGGTTGCACAGGGCTTGATGAGCTGCTTGGAATTGAGCCAGCATTCGCAGAGTTTCAGGAAACCCTCTTTAGCCAGGCTTCCTTAAGCCTTGAGCGTAGTGTGCAGTCCAGAGAGGTAAACCAGAAACTAGACAAGGACATCTCTCTGTTCCTCATTCGTCTTTCCCCATACTTCCTGCTCAAGCCTGCGCTGAAGTGTCTGGAATGGCTTGTACACAGATTCCACATTCACTTGTACAACCAGGAGGGTCTGATTGCCTGTGTGTTGCCATATCATGAGACCAAAGTGTTTGTACGTGTCATTCAGCTTTTTAAGTTAGAGGATCCCACACACAGGTGGCATTGGCTGCATGCTCTTCAGAAGCCTGGAGTTCCTTTGGCAAGAGGGACGCTCCTGACTCACTGTTATAAAGATCTGGGTTTTATGGATTTCATCTGCACCTTGGTGACAAAGTCagttgagGCATATTCACCATTTGTTCACGATGGAAAATGTGCGCAGCTGCGAGTGATTTTTTCCTTCTATTCGGCGACCATTGTTCCCACTCTGGAGGCAATGGAGAAAGTCACAGATTCTGTCATAGCCAAGTTGCTTCCATATTTACAAATGGGCCTGAAATCAGAGCTGTTGGACTACAAAGCCGCTACATACATGATTGTGTGTCAGCTTGCTGTGAAGGTTGTAATGCAGCCAGAGCTGCTGGATTCACTGGCACGGCAGGTGAGTAGGTCAGTGAGTAGAGCTCCAGAGCTGACTTCTGAGGGCTTGTCGTGCCTCATCATCCTCCTGCAAAACCAGAAGGAAAGTGTCATTGGACAAAAGACGTTTGAGCACCTCTGTCAAGTTCCCTCTCTTGTGCCCACCCTGAAGTGTATAGCAGCCTCCTATGATATCAGTCCCTTGCTGCACTACCTCCTGCCAAAGCTCACTAATTTGGTCATCACGCAAAATGATGAGTTGGGCAATAAGGACTCTCACAGTGCATCAAACTGCCGGCTGCTCGAGTCAGTCATTGAGAACCTTCCATTGAACACCAGCTTGGCGAGCACAGTGGCACGACTACTCCTTGAGGGATACATGTGCTGTGGTACAGAGCTCCCCTCAGACAGACTCTCCTCCCTTAATCAGAAGATCCAACCAGTTGTCAGACTCTTTGAGCACAAGTATTCTGGTGCTCTTGATGCTGTTCTGGTGGGTTGTGTGGGTGAGAAGTGCTCAGCTAAGCAGAAGAACCTCCTCCATCAGTTCCTCTCTCTTACCATGTGCTGTGGCAAGCACCAGgttCTGGCAAACTCGGACACCTCTCTGATGCTCAGTCTTAAACACCCTGTGTCCGCTGTGAGGAACATGGCTATAGAATATGTGAAAGAGATTCTCACCTCTGGGCAGGAGGGCTTTGATGAGACATTCCTGAAGGATGCATTGCTTGAGAGGTTGAAGGATGATGTGCCTGATGTTGTGCTGTCAGCCCTCTCAGCACTGCGGCTCTATCTCGACCACATGGATTTAGAGGACACAATTTCTTGTTTGATTTCTCTTCTCCACCGGGTCCAGCCATCGGACACCGAGCCCTGGTATTCAGTATTGAAGGAGGTTGTCAGAGTTCTTGATGACCTGCCCACCAGGAAGGCCAACCCTGACCTGAGAGCCCAAATTAGCTGGGAGCTGCTACCTTTCCTGCTAATAACAAATTCGGTACCTGAGTCAGCAGAGCTGAAGTTAGCGCTGTGTGTGGCTGAGACACATCTCCTATCCCAGCATCCTCTCACCCAGGGCTGGGCCAAAGtgttacagAGGGTGCTGGAGAAAACACCTCCAGCAGATGTTATCAGAGTTGCCAACCAGATGCTCATCAGCACTCTGACAAAAAACCTGGCTCGCATGGAGCCGTCCACTAAGCGCAATGCTattgagagtgtgtgtgcattgctgGCCAAGCAGGGTgctggagtgagagagagggcgGCATTCGTGGTGTTGATCTGTGCTCTTCTGCAGACTCTGGAGTCTCTGAATGAGagcacacacctccacacagcTCAGATACTCTTCAGACTGCTTGAGCCCTCACTGAGAAAGCTCTACACTCTACAGACTGAAAAGGTATATGAGGGCCAGGACAAAGCATCTCTGCCCATGTACGAGGTGCTTGCAGGCTTCCTACTCAAACTGCACACTGGACAAAATGCAGAAAGGGAATATAGCTTgctgctcctctctctcctccaacACTTCATTAACAACCTCAAATGTCCTGAGTCTACATTTAAAGgtgAGCACTGGTGGAACCCAGAGAAGCTAGACATGAATACCTGCTGCTACCTGCAGTTGCTGTGCCACCTTTTTGACATGGTGGTGTCTGGGGCTAGCCAGGGACCCCTGGTCTCCAGTTTTAGAGCCCTCTTGCAACCCTTATTACAGGTTCATCTGAGTGAGCCAGAGCATCTCTTTAAGTTTCTGTCTCTACTGTGGGGCTACAGCAATAACTTAAGTGACCAGTTAGAGTTCCGGGTGACAGCATTGCTGCAGACCCAGGCGATGTATGTGGGCAAAGTGCTGCTTACTGCCCTCCATGTGAAAAAGCTCAACATTCTGGTCTCACCCTCCTCATCAGTGGTGCCGTCTCTCTTGGGGTGTCTGAGTTGTGGAGTGAGGGAGGTGAGAAGGGCAGCGGTGGCGGTGTTGCAACCTCTTGCAGGAGTCACCTCCTCTCCATACCACCCTCTGCTAGAGAAGCTGCTTTTATCAGCTGAAGAGCTCATCGCTGATCCAGCCTACCTCTCTCAGGCATTGTCTAGGCTATATGAGGAAGCTGTTTCTGTGACAGGGAAGGGCAGAAACAAGCTGCTGTTGGCTATAGATCAGCTTCTACAATGTGTGAGGTCTCCTGACTGCCCCAGCTACATGGCCAAAGTATTGCTGCGAGCACTGCAAGACGTCAATGGAGAGTTAGTTTTGGCCATCCTCCTCCCAGCCATGGAGCGTTTGCTGGAGCAGTGTGCTCCAGACACTCCAGTTTTTCTGCCAGATGAGGCTCTGTTCCTGCAGTTGCTGCTGGGCAAGTACAGTGAGGCTTCTGCCCCACTGCTGGCTCGAGATGCTAAGAGCCTGGAGCTCTTTATCACTGCACTAGGCACCTCCTCTAAACCCTACTCACACATGGACAGTTTCCAGATCATTGCCATGGAGCAGATCACTAAGCCCTTCTTTATGGCCCTGGGAGATGAGAACATTCAGCAGAGGATATTGGGAGTGCTGTTTGACCTGCTGGTGGACAATAAAAACCCAGCTTGCTCCCAGACCATTAATAGTGTCTTCAAAGGGATTGCTGTGGATGCAGAGTTAGTGGCTAATGAACTAACCCCTATGGACAAGCCAAAAATGTCAGGGAGTGTGCAGCAAACTCGCCGGAGCAAGGTGCAGCCCAAGAAAGCACAGGATGCCCCAAAAGATGGTGGAGCGGTGTCCTGGACGAGGGTCACCTTTATTTTGGAGCTCCTACAGCACAAAAAGAAGCTAAAGAGGCCCCAGATGTTGGTGCCAGCTCTTTTCAACCTTCTCTCCAGATGTTTGGAGGTGTCCACTGAGCAAGAGAATGTGGAGTACACCAAACAGCTTCTCCTCAGTGTTCTCCTCAATGTCTGCCAGAAGCTCTCCCCACAGGGTGGACCCATCAGCAAGGaTATCTTGGATGAGGATAAATTTAGTGTGGAGCTAGTGGTTCAGTGTGTGAGGACATCTAACACGCCTCAGACACACCACCAcgcactgctgctgctgggtaCCGTAGCTGGAATCTTCCCAGAGAAAGTTCTGCACAATATTATGCCAATCTTCACCTTTATGGGGGCCAACATTATGCGACTTGACGATGCCTACAGCTTCCAGATCATCAACAGGACTGTGCAGATGGTCATCCCTGCTCTCATTCATGCTCATGACAGGGGGAGTACTCATCCGGAGGGGCAAATGCAGGCTGTGGTGACACGTATCATGCACGTTTTTGTTGATGCTCTCCCACACGTCCCTGAACACAGGCGTATACCCATCCTCAGGCAACTGCTGAGCACACTGGGCCCTGCCCATTTCCTCTGGGTCTTAATGCTGCTATTGTTCAAACAGCACGCCACCAGCACTGCTATCAGCAGCACAGGAGCTGAGAAGGAAGCAGCACTGGAGCGGGATCAAGAGTTCTGGGTCTTGCTGTGTTGTGAGTTTGAAGTTCATGAGCAGCTTACCACTCTCATTAAAATTCTACAGTTCCTCTTGACCCTCCCAAAGGAAAAAGAGGATGTCCCGGAGAGAAGACGGACAAGAGGAGCAATATGTCAAAAAACCGAGGAAAGCACTTTAGATCTGGTTTTTAGCGTAGAGGCCCATAGTGGAAAAGAGCTGCGGCATTTTAAGTTCCTGTCGGTTTCCTTCATGGGCCAGCTACTAGCCGCCAGCAGCTTTGTAGGAAAGGTGGCTGATTGTGAGGATTTAACTGAAAACTCTCTACAGGAGCTTCAGCAAAGCCTGTTGGAGGAGAACCTGCGCTACATCCACACTGTGGCTCTCTGTGTCGAGGAGAACTCGGACAAACCCACAGCCAAGTTTTGGAGAGCACTGCTTACCAAGTCATATGATGTCTTGGATAAGGTGAACGCCCTCCTCCCCACTGACACTTTCATCATGGTGGTGCGGGGCTTGATGGGTAATCAGCTGCCATCAGTAAGGAGGAAGGCAATGGAGCTGCTGAACAACAGATTGCAGCAGAGGACACGGTGGGAGGAGCAACAGGTGGTTGTGCTGCTGGAACTCATTGATGACCTCTTGAGCATTGTGGGGCGGGGTTGTGGCCAGATTGGAGGACACGAGGGAGAAGAGCAAGCCATTAACAGGCAGACAGCCCTCTACAGCCTGAAGCTGCTGTGCCGCAGTTTTGGCACCTGCCACCAGAAAGCATTCTTACCTGTACTGAGTAGGACGGTGGAGTTGGTGGCAAACCCCAGTGAAGAAAGAAACGTTATGAGCAGCGCTTTGCTCTGTGTGGCCGAAGTCACTAGCACACTGAAGGCCCTTGCCATCCCCCAAGTGCACAGGTTAATGCCAGCGGTTCTACAGGCCCTGAAGGAGCGCAAGGATCTTTTTTCTACAGAGGTGTATCTGTTGAGTGCAGTTACAGCCCTACAGAGAACAGCAGAAACTCTCCCTCATTTCATCAGCCCTTACCTTGAGGACACCATGTCACAGGTTGCGCGCCTGACACGGGTTGCTGAACGTCTCCCCACCTGCCCTCAGCTAGCCGTTAGACTCGCCTCCTTGAGTTCCACACTCGCAACAAAGGTGCCACCCAGGGTTCTAATGCCTACCCTGGCAAGgtgctataacagcatggtggACTCTCAGCAGAGCCATCTTCGTCCTCTAATGAACATCTTGAAAGAGCATATTGTTCATATGGGAAAGGATCAACTCAATTCCCACCAGTCAGAGCTCACCTCCTTCTTTCTGTCAGCTCTGGACTTCCGTACCAAACACTGTCAGGGAGATCTGGAAAAAACAGCTGAAATCGAGGGTTGTGTCATAGACTGTCTTCTCGTGATGGTAATGAAGCTTTCTGAGGTCACATTTAGACCACTGTTTTTCAAGCTTTTTGACTGGAGTAAGACAGAAGGAGCGCCTAAAGACCGAATGCTGACCTTCTGCAGGCTGGCTGATTGCATCGCAGACAGACTGAAGGGCTTGTTTGTTCTGTTTGCTGGGCAGCTGGTGAAACCATTCTCAGACCTTCTCCGCCAACTCAATATTGCCCACACTGATGAGGCTTTCTTTGACTcagaggatgaagatgatgctGATGCCTTGCAGAAGAGCAGTCTGTTGCTGCAATACACATTGGACTGTCTCCATAAGATCTTTCTGTATGACACACAGCGATTCCTCAGCAAAGAAAGAGCGGATGCACTCCTTGTCCCCCTGGTAGATCAGTTGGAAAACATGTTAGGCGGAGAGCAGGTCTACCAGACAAGAGTCACCAAGCACTTGGTTCCGTGTGTAGCACAGTTCTCTGTTGCCATGGGTGATGACTCGCAGTGGAAAGTTCTCAACTACCAGATCCTGCTGAAGACCCGCCATAGCTGTCCCAAgGTGCGCTTCTCTGCTTTGCTAATGTTGGTGGAGTTGGCAAGCAAACTAAAGGAGAACTACATGGTGCTTCTGCCAGAGAGCATCCCGTTTCTTGCTGAGCTTATGGAAGATGAATGCGAGGAGGTGGAACACCAGGTACAGAAGACTGTTCAGGAGATGGAGACGATTCTGGGAGAATCCTTACAGAGCTACTTCTAATACCAGCATCTGACAAAAAAGCTTCTTTAAACGGAACATGCCCTACTGCGGCTTCAGCATCACTTTTCTTATGCCTTTTCTTCCTGTCTCATGTATGGCaagctttaaataaatcttaaaaagCCTTCACAGCCACTGCCAGGATGGCCTTTGTTTGTACCGTTGCACAACAAGTTATCTGTTGTGCACTTCTGCCAGCAAGTGACATTTGAGTTACAGTTTTCTGTTTTACACAGTTTAGTAGTGAAGCAACAAATCCAGATGATTGTACCCAGTAAATTCCTGCCAAGTGCTGTTATGTG

Function

symbol description
heatr1 Predicted to enable snoRNA binding activity. Acts upstream of or within maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); negative regulation of apoptotic process; and regulation of RNA stability. Predicted to be located in nucleolus. Predicted to be part of 90S preribosome; small-subunit processome; and t-UTP complex. Is expressed in eye; forebrain; immature eye; midbrain; and midbrain hindbrain boundary. Human ortholog(s) of this gene implicated in pancreatic ductal carcinoma. Orthologous to human HEATR1 (HEAT repeat containing 1).

NR:

description
HEAT repeat-containing protein 1 isoform X2

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0043487 regulation of RNA stability biological_process
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14550 UTP10, HEATR1; U3 small nucleolar RNA-associated protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309403.1 True 6814 mRNA 0.50 45 3938282 3971885

Neighbor

gene id symbol gene type direction distance location
arg1 arg1,LOC108273904 coding downstream 3144 3930440 ~ 3935138 (-)
LOC113539277 nt5m,LOC107719901 coding downstream 107468 3815947 ~ 3830814 (-)
med9 med9 coding downstream 153152 3784309 ~ 3785130 (-)
LOC113539064 NA coding downstream 287258 3648368 ~ 3651024 (-)
neurod2 neurod2 coding downstream 541924 3392544 ~ 3396358 (-)
sstr2a sstr2a,LOC108274330,LOC108437322,LOC103031004,LOC107726267,LOC107719927,LOC107653975,LOC107693649 coding upstream 28564 4000449 ~ 4004877 (-)
LOC113527563 LOC108273452,LOC108437319 coding upstream 41962 4013847 ~ 4016313 (-)
sox9a sox9 coding upstream 320066 4291951 ~ 4295240 (-)
LOC113527719 LOC108273413 coding upstream 578223 4550108 ~ 4558134 (-)
mapk8b mapk8b,LOC108274025,LOC108437314,LOC107388204,LOC108263675,LOC103040580 coding upstream 653713 4625598 ~ 4648676 (-)
G190490 NA non-coding downstream 13052 3920191 ~ 3925230 (-)
LOC117598488 NA non-coding downstream 88362 3845785 ~ 3849920 (-)
G190419 NA non-coding downstream 161310 3776733 ~ 3776972 (-)
G190354 NA non-coding downstream 240861 3693964 ~ 3697421 (-)
G190351 NA non-coding downstream 250774 3687306 ~ 3687508 (-)
G190563 NA non-coding upstream 64766 4036651 ~ 4037340 (-)
G190656 NA non-coding upstream 187891 4159776 ~ 4161007 (-)
G190731 NA non-coding upstream 282608 4254493 ~ 4258754 (-)
G190742 NA non-coding upstream 316532 4288417 ~ 4288803 (-)
G190821 NA non-coding upstream 601797 4573682 ~ 4575530 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 1082789 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 1110530 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 1126891 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 1328509 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 1727303 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 939849 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 977278 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 1087613 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 1512806 5484691 ~ 5490925 (-)
G191430 NA other upstream 1639235 5611120 ~ 5613954 (-)

Expression


Co-expression Network