polr3a (polr3a)


Basic Information

Item Value
gene id polr3a
gene name polr3a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25709893 ~ 25745120 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309478.1
TTAATGCGCATGCGCAGACCGTGCTGAGGTCCTGCAGCATGTCATGCCGCACTGTTGCGTGTCCAGGCGGTGAAACTGTGCGGGTTTAGTTCATAAAGAAGGAGAATAAAGACGCCATCATGGTGAAGGAGCAgttcagagagacagatgtggCCAAAAAGATAAGCCACATCTGTTTTGGGATGAAGTCGGCGGAGCAGATGCGGCAGCAGGCTCACATTCAGGTGGTCAGTAAGAACCTGTACAGCCAGGACACGTCTCACACACCGCTGCCCTACGGAGTGCTGGACCACCGCATGgggaCGAGTGAGAAGGACCGTGGCTGTGAGACGTGTGGGAAGAACCTGGCGGATTGTTTGGGTCATTACGGTTATGTGGATTTGGAGCTGCCCTGCTTCCACATCGGCTACTTTAAAGCCATCATCGGCATCCTGCAgatgatcTGTAAGACGTGTTCTCGGATCATGCTGAGTAAAGAGGAGAGGCAGCAGTTCCTGGATTATCTGCGGCGTCCCGGGTTGCCGTACCTGCAGAAACGCGGCCTGAAGAAGAAAATCTCAGACAAGTGCAGGAAGAGGAACGTGTGTCTTTACTGCGGAGCCTtcaacggcccGGTGAAGAAATGTGGTCTGTTGAAGATCATCCATGAGAAGTATAAAAGCAGTAAGAAGGTGGTAGATCCCATTGTGTCTGATTTCCTGCAGTCCTTCGACACGGCCATCGAACACAACAAAGAGGTGGAGGGACTGCTCACCAGAGCTCAGgaaAACCTGAATCCTCTGGTGGTGCTGAATCTTTTCCGGAGAATTCCCGGTGAGGACGTTCCTCTGCTTCTGATGAATCCGGAGGCGGGGAAACCCTCTGACCTCATCCTGACCCGCCTCCTGGTCCCGCCCCTCTGTATCCGCCCCTCTGTCGTCAGTGACCTCAAATCGGGTACTAACGAGGACGACCTCACCATGAAGCTGACCGAGATCATCTTCCTCAACGACGTCATCAAGAAGCACCGCATGTCAGGAGCTAAAACTCAGATGATCATGGAGGACTGGGACTTCCTGCAGCTGCAGTGTGCTCTCTACATCAACAGCGAACTGTCAGGAATCCCGCTCAACATGGCACCCAAGAAGTGGACTAGAGGATTTGTCCAGAGGCTGAAGGGCAAACAGGgaCGTTTCCGTGGTAACCTGAGTGGAAAGAGAGTGGATTTTTCCGGAAGAACGGTCATCTCTCCCGACCCGAACCTGAGGATCGACGAGGTCGCTGTTCCTGTCCACGTCGCCAAAATCCTCACTTACCCAGAgaagGTGACCAAAGCCAACATGGAGCTGATGAGGAAGCTGGTGAAGAACGGACCAGACGTTCATCCTGGAGCGAACTTCATCCAGCAGAGACACATGCAGATGAAGAGGTTCCTGAAGTACGGGAACAGAGAGAAGATGGCTCAGGAGCTGAAGCTGGGGGACGTGGTGGAGAGACACATGATCGATGGAGACATCGTCCTGTTTAACCGCCAGCCGTCACTACACAAACTCAGCATCATGGCACACATCGCGCGTGTGAAACCCCACCGGACCTTCCGCTttaacgagtgtgtgtgtacgccTTATAACGCCGACTTTGATGGAGACGAGATGAACCTTCACCTGCCGCAGACTGAGGAGGCCAAAGCTGAGGCTCTCGTACTCATGGGgACGAAAGCTAACCTGGTCACCCCAAGGAATGGTGAACCTCTGATCGCTGCTATTCAGGACTTTCTCACAGgtggtTATCTTCTCACTCTGAAGGACACGTTCTTCGATCGAGCTAAAGCCTGTCAGATCATCGCCTCCATCCTGGTGGGCAAAGACGAGAAGCTCAAAATCGCCCTCCCTCACCCTGCTATTATAAAGCCCGTGTGTTTGTGGACAGGGAAGCAGATCTTTAGTTTAATCCTGAAGCCCAGTAAGATCTGCCCGGTGAAGGCGAACCTGAGAACCAAAGGCAAACAGTACTGCGGCCGAGGAGAGGACCTGTGTCACAACGactccttcgTGGTGATCCAGAACAGTGAGTTACTGAGTGGCAGTATGGATAAAGGCACGCTGGGTTCAGGGTCAAAGAACAATATCTTCTACATCCTGCTGAGAGACTGGGGTCAGGTGGAGGCAGCTGACGCCATGAGCCGCCTCGCCCGAGTCGCACCCACATACCTCTctaaCCGTGGGTTCTCCATCGGGATCGGGGACGTGACCCCTGGTCAGGGTCTGCTGAAGGCCAAACAGGAACTGCTCGACGCCGGGTACAAGAAGTGTGACGAGTACATCGAGGCCCTGAATACAGGAAAACTACAGCAACAGCCGGGTTGTACAGCTGAGGAGACGCTggaggtGCTGATCCTTAAAGAGTTGTCAGTAATTAGAGATCATGCTGGCAGTGCGTgtctgagagagctggacaagAGCAACAGTCCACTCATCATGGCTCTGTGTGGCTCGAAAGGCTCCTTTATTAACATCTCTCAGATGATAGCGTGTGTGGGTCAGCAGGCCATCAGTGGCTCTCGAGTTCCCGATGGATTTGAGAATCGATCGCTGCCGCACTTTGAGAAACACTCAAAActtCCCGCAGCTAAAGGCTTTGTGGCAGACAGTTTTTACTCGGGTTTGACCCccactgagttttttttccacactatGGCTGGCCGTGAGGGGTTAGTGGACACGGCGGTGAAAACAGCAGAGACCGGCTACATGcagaggCGTTTGGTGAAGTCTCTGGAGGATCTGTGCTCTCAGTATGACCTCACCGTGCGCAGCTCCACCGGTGACATCATCCAGTTCATCTACGGAGGAGACGGACTCGACCCCGCTGCCATGGAGGGCAAAGACGAACCGCTCGAGTTCAAGAGAGTGCTGGATAACATccggGCGGTCTACACCTGTGCTGATGAACCTGCTCTGAGTAAAAACGAGCTGGTGCTGACCGCTGACTCCATCATGAAGAGGAACGACTTCACCTGCTGCAGAGACACCTtcttacagACAATGACTGGTACTGGTGCTCAGAGGTTTACAGAGgaaattaaaaaatttatcaACAGCGTGGCAGAGAAAATCAAGAAGACCCGAGACAAGTACGGCATAAACGATAATGGATCCACAgagCCTAAAGTTTTGTACCAGCTGGACAGAATCACGCCCACACAGCTGGAGAAGTTTCTGGAAACATGCAGGGACAAGTACATGAgAGCTCAGATGGAGCCGGGCTCGGCCGTGGGCGCTCTGTGTGCTCAGAGTATCGGAGAGCCTGGAACCCAGATGACCCTGAAGACGTTCCACTTTGCGGGTGTGGCGTCGATGAACATCACGCTGGGGGTACCCCGCATCAAAGAAATCATCAACGCCTCCAAGAACATCAGCACACCGATCATCACTGCACACCTGGACACGGAGGACGACGCAGACTTCGCCCGGCTGGTGAAGGGCAGGATTGAGAAGACGCTCCTGGGAGAGatctCAGAGTACATAGAGGAGGTGTTTCTGCCTGATGACTGCTTCATCCTGGTGAAACTCTCACTCGAGAGGATCCGTCTTCTCAGACtggaggtgaACGCAGAGACAGTCAGGTACTCTATCTGTATGAGTAAGCTGCGTGTGAAGCCGGGTGATATAGCGGTTCACGGTGAGgcggtggtgtgtgtgtctcctcgAGAGAACAGCAAGAGCTCCATGTACTACGTCCTGCAGTCACTCAAACAGGAGCTGcccaaggttgttGTACAGGGCATTCCCGAGGTTTCGCGCGCTGTGATCCACATTGATGAACAAAGCGGCCGTCAGAAGTTCAAGTTGCTGGTGGAGGGAGACAACCTGCGCGCTGTCATGGCAACACACGGTGTCAATGGCAACCGCACCACGTCCAACAACACAtacgaggtGGAGAAGACGCTGGGCATCGAGGCCGCGAGGACGACCATCATTAATGAGATCCAGTACACCATGGTGAATCACGGCATGAGCATCGACCGGCGTCACGTCATGCTGCTCGCTGATCTCATGTCCTACAAGggggAGATTCTGGGCATCACTCGCTTCGGCTTGGCCAAGATGAAGGAGAGCGTCCTGATGCTGGCGTCGTTCGAGAAGACCGCTGATCATCTGTTTGACGCTGCGTATTTCGGACAGAAAGATTCTGTGTGTGgtgtgTCTGAGTGTATAATAATGGGAATCCCCATGAACATTGGCACTGGTCTGTTTAAACTCTTACACAGAGCAGACAAAGAACCCAATCCTCCACAGAGAACCCTGCTGTTTGACACAGCTGACTTCCATATACCACTGGCCtcctagcacacacacacacacacacacacacacacacacacacacacaca
>XM_034309479.1
ATGGTGAAGGAGCAgttcagagagacagatgtggCCAAAAAGATAAGCCACATCTGTTTTGGGATGAAGTCGGCGGAGCAGATGCGGCAGCAGGCTCACATTCAGGTGGTCAGTAAGAACCTGTACAGCCAGGACACGTCTCACACACCGCTGCCCTACGGAGTGCTGGACCACCGCATGgggaCGAGTGAGAAGGACCGTGGCTGTGAGACGTGTGGGAAGAACCTGGCGGATTGTTTGGGTCATTACGGTTATGTGGATTTGGAGCTGCCCTGCTTCCACATCGGCTACTTTAAAGCCATCATCGGCATCCTGCAgatgatcTGTAAGACGTGTTCTCGGATCATGCTGAGTAAAGAGGAGAGGCAGCAGTTCCTGGATTATCTGCGGCGTCCCGGGTTGCCGTACCTGCAGAAACGCGGCCTGAAGAAGAAAATCTCAGACAAGTGCAGGAAGAGGAACGTGTGTCTTTACTGCGGAGCCTtcaacggcccGGTGAAGAAATGTGGTCTGTTGAAGATCATCCATGAGAAGTATAAAAGCAGTAAGAAGGTGGTAGATCCCATTGTGTCTGATTTCCTGCAGTCCTTCGACACGGCCATCGAACACAACAAAGAGGTGGAGGGACTGCTCACCAGAGCTCAGgaaAACCTGAATCCTCTGGTGGTGCTGAATCTTTTCCGGAGAATTCCCGGTGAGGACGTTCCTCTGCTTCTGATGAATCCGGAGGCGGGGAAACCCTCTGACCTCATCCTGACCCGCCTCCTGGTCCCGCCCCTCTGTATCCGCCCCTCTGTCGTCAGTGACCTCAAATCGGGTACTAACGAGGACGACCTCACCATGAAGCTGACCGAGATCATCTTCCTCAACGACGTCATCAAGAAGCACCGCATGTCAGGAGCTAAAACTCAGATGATCATGGAGGACTGGGACTTCCTGCAGCTGCAGTGTGCTCTCTACATCAACAGCGAACTGTCAGGAATCCCGCTCAACATGGCACCCAAGAAGTGGACTAGAGGATTTGTCCAGAGGCTGAAGGGCAAACAGGgaCGTTTCCGTGGTAACCTGAGTGGAAAGAGAGTGGATTTTTCCGGAAGAACGGTCATCTCTCCCGACCCGAACCTGAGGATCGACGAGGTCGCTGTTCCTGTCCACGTCGCCAAAATCCTCACTTACCCAGAgaagGTGACCAAAGCCAACATGGAGCTGATGAGGAAGCTGGTGAAGAACGGACCAGACGTTCATCCTGGAGCGAACTTCATCCAGCAGAGACACATGCAGATGAAGAGGTTCCTGAAGTACGGGAACAGAGAGAAGATGGCTCAGGAGCTGAAGCTGGGGGACGTGGTGGAGAGACACATGATCGATGGAGACATCGTCCTGTTTAACCGCCAGCCGTCACTACACAAACTCAGCATCATGGCACACATCGCGCGTGTGAAACCCCACCGGACCTTCCGCTttaacgagtgtgtgtgtacgccTTATAACGCCGACTTTGATGGAGACGAGATGAACCTTCACCTGCCGCAGACTGAGGAGGCCAAAGCTGAGGCTCTCGTACTCATGGGgACGAAAGCTAACCTGGTCACCCCAAGGAATGGTGAACCTCTGATCGCTGCTATTCAGGACTTTCTCACAGgtggtTATCTTCTCACTCTGAAGGACACGTTCTTCGATCGAGCTAAAGCCTGTCAGATCATCGCCTCCATCCTGGTGGGCAAAGACGAGAAGCTCAAAATCGCCCTCCCTCACCCTGCTATTATAAAGCCCGTGTGTTTGTGGACAGGGAAGCAGATCTTTAGTTTAATCCTGAAGCCCAGTAAGATCTGCCCGGTGAAGGCGAACCTGAGAACCAAAGGCAAACAGTACTGCGGCCGAGGAGAGGACCTGTGTCACAACGactccttcgTGGTGATCCAGAACAGTGAGTTACTGAGTGGCAGTATGGATAAAGGCACGCTGGGTTCAGGGTCAAAGAACAATATCTTCTACATCCTGCTGAGAGACTGGGGTCAGGTGGAGGCAGCTGACGCCATGAGCCGCCTCGCCCGAGTCGCACCCACATACCTCTctaaCCGTGGGTTCTCCATCGGGATCGGGGACGTGACCCCTGGTCAGGGTCTGCTGAAGGCCAAACAGGAACTGCTCGACGCCGGGTACAAGAAGTGTGACGAGTACATCGAGGCCCTGAATACAGGAAAACTACAGCAACAGCCGGGTTGTACAGCTGAGGAGACGCTggaggTGCTGATCCTTAAAGAGTTGTCAGTAATTAGAGATCATGCTGGCAGTGCGTgtctgagagagctggacaagAGCAACAGTCCACTCATCATGGCTCTGTGTGGCTCGAAAGGCTCCTTTATTAACATCTCTCAGATGATAGCGTGTGTGGGTCAGCAGGCCATCAGTGGCTCTCGAGTTCCCGATGGATTTGAGAATCGATCGCTGCCGCACTTTGAGAAACACTCAAAActtCCCGCAGCTAAAGGCTTTGTGGCAGACAGTTTTTACTCGGGTTTGACCCccactgagttttttttccacactatGGCTGGCCGTGAGGGGTTAGTGGACACGGCGGTGAAAACAGCAGAGACCGGCTACATGcagaggCGTTTGGTGAAGTCTCTGGAGGATCTGTGCTCTCAGTATGACCTCACCGTGCGCAGCTCCACCGGTGACATCATCCAGTTCATCTACGGAGGAGACGGACTCGACCCCGCTGCCATGGAGGGCAAAGACGAACCGCTCGAGTTCAAGAGAGTGCTGGATAACATccggGCGGTCTACACCTGTGCTGATGAACCTGCTCTGAGTAAAAACGAGCTGGTGCTGACCGCTGACTCCATCATGAAGAGGAACGACTTCACCTGCTGCAGAGACACCTtcttacaggaaattaaaaaatttatcaACAGCGTGGCAGAGAAAATCAAGAAGACCCGAGACAAGTACGGCATAAACGATAATGGATCCACAgagCCTAAAGTTTTGTACCAGCTGGACAGAATCACGCCCACACAGCTGGAGAAGTTTCTGGAAACATGCAGGGACAAGTACATGAgAGCTCAGATGGAGCCGGGCTCGGCCGTGGGCGCTCTGTGTGCTCAGAGTATCGGAGAGCCTGGAACCCAGATGACCCTGAAGACGTTCCACTTTGCGGGTGTGGCGTCGATGAACATCACGCTGGGGGTACCCCGCATCAAAGAAATCATCAACGCCTCCAAGAACATCAGCACACCGATCATCACTGCACACCTGGACACGGAGGACGACGCAGACTTCGCCCGGCTGGTGAAGGGCAGGATTGAGAAGACGCTCCTGGGAGAGatctCAGAGTACATAGAGGAGGTGTTTCTGCCTGATGACTGCTTCATCCTGGTGAAACTCTCACTCGAGAGGATCCGTCTTCTCAGACtggaggtgaACGCAGAGACAGTCAGGTACTCTATCTGTATGAGTAAGCTGCGTGTGAAGCCGGGTGATATAGCGGTTCACGGTGAGgcggtggtgtgtgtgtctcctcgAGAGAACAGCAAGAGCTCCATGTACTACGTCCTGCAGTCACTCAAACAGGAGCTGcccaaggttgttGTACAGGGCATTCCCGAGGTTTCGCGCGCTGTGATCCACATTGATGAACAAAGCGGCCGTCAGAAGTTCAAGTTGCTGGTGGAGGGAGACAACCTGCGCGCTGTCATGGCAACACACGGTGTCAATGGCAACCGCACCACGTCCAACAACACAtacgaggtGGAGAAGACGCTGGGCATCGAGGCCGCGAGGACGACCATCATTAATGAGATCCAGTACACCATGGTGAATCACGGCATGAGCATCGACCGGCGTCACGTCATGCTGCTCGCTGATCTCATGTCCTACAAGggggAGATTCTGGGCATCACTCGCTTCGGCTTGGCCAAGATGAAGGAGAGCGTCCTGATGCTGGCGTCGTTCGAGAAGACCGCTGATCATCTGTTTGACGCTGCGTATTTCGGACAGAAAGATTCTGTGTGTGgtgtgTCTGAGTGTATAATAATGGGAATCCCCATGAACATTGGCACTGGTCTGTTTAAACTCTTACACAGAGCAGACAAAGAACCCAATCCTCCACAGAGAACCCTGCTGTTTGACACAGCTGACTTCCATATACCACTGGCCtcctag

Function

symbol description
polr3a Predicted to enable DNA binding activity and nucleotidyltransferase activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 7 with or without oligodontia and-or hypogonadotropic hypogonadism and progeria. Orthologous to human POLR3A (RNA polymerase III subunit A).

NR:

description
PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform X1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0001056 RNA polymerase III activity molecular_function
GO:0032549 ribonucleoside binding molecular_function

KEGG:

id description
K03018 RPC1, POLR3A; DNA-directed RNA polymerase III subunit RPC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309478.1 True 4372 mRNA 0.53 32 25709893 25745120
XM_034309479.1 False 4173 mRNA 0.53 31 25710012 25745076

Neighbor

gene id symbol gene type direction distance location
LOC117598572 LOC108273858 coding upstream 311876 25394338 ~ 25398017 (+)
LOC117598571 LOC108273860,LOC108415358 coding upstream 315591 25390697 ~ 25394302 (+)
LOC113524867 LOC108273861,LOC108415359,LOC107676426,LOC107597761,LOC107748324,LOC107718692,LOC104943471,LOC108416695 coding upstream 320012 25386835 ~ 25389881 (+)
LOC117598570 dusp13,LOC108273859,LOC107748394,LOC107595212 coding upstream 323505 25382865 ~ 25386388 (+)
LOC113527655 LOC108274290 coding upstream 439240 25260740 ~ 25270653 (+)
tbata LOC108273511 coding downstream 28394 25773514 ~ 25791680 (+)
star2 LOC108274109 coding downstream 58669 25803789 ~ 25818928 (+)
ndr2 nodal coding downstream 224849 25969969 ~ 25973840 (+)
lrrc20 lrrc20 coding downstream 229911 25975031 ~ 25981707 (+)
sdk2b sdk2b,sdk2,LOC108442036 coding downstream 540554 26285674 ~ 26426786 (+)
G202455 NA non-coding upstream 12743 25641036 ~ 25697150 (+)
G202457 NA non-coding upstream 60011 25648389 ~ 25649882 (+)
G202445 NA non-coding upstream 107455 25598775 ~ 25602438 (+)
G202439 NA non-coding upstream 123129 25586355 ~ 25586764 (+)
G202401 NA non-coding upstream 143966 25505355 ~ 25565927 (+)
G202541 NA non-coding downstream 203751 25948871 ~ 25968572 (+)
G202557 LOC108273842,LOC108266876,LOC108266882,LOC108266898 non-coding downstream 243988 25989108 ~ 25995087 (+)
G202567 NA non-coding downstream 288020 26033140 ~ 26033815 (+)
LOC117598627 NA non-coding downstream 314504 26059624 ~ 26064285 (+)
G202593 NA non-coding downstream 373604 26118724 ~ 26137814 (+)
G202374 NA other upstream 207265 25498180 ~ 25502628 (+)
G202397 LOC108273443 other upstream 210974 25497715 ~ 25498919 (+)
dupd1 comtd1,cmtd1,LOC108273857 other upstream 281781 25329209 ~ 25428112 (+)
LOC113527710 hmx3 other upstream 1043285 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 1203817 24455659 ~ 24506076 (+)
LOC117598538 NA other downstream 254531 25999651 ~ 26005825 (+)

Expression


Co-expression Network