LOC117598634


Basic Information

Item Value
gene id LOC117598634
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2245794 ~ 2269055 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309486.1
AAACATGGCCACCACCaacacaaacatggccaccactaacacaaacatggccgccaccaacacaaacatggccaccaggGACTACGAAAACTTTTGCAACTGCAGCCATCTCTGCTGTCTgacattatggaaggagtctccagtgtcagagCACTTGGCTCTGGTCTTTGGCTCAGATTGGTGGCTCACGGttcaacccaaaacacacagcatgtttgatttagttcCTATATTTGGGACGATTCAGGatcgaatcactttctcagtGCAGCAAACATCTCAAGTCAACAAACATCTCAAcaggGAAATAAGAACCGGTTTGCATAGGTCATTTCACACAAAGGAACAAAAGTTCAGTTTGTCAGATTACGGGAGAAGGTTCTCTGAAGGACATATAAAGGACTGCAGAGGGATGTTCAacacatttcttatttcttactGTGCGTCAGTGATGGAGAAGCACCTGTTCAGAATCCTGTTTTTTACTGGCATCATGAACGTCGTCCTGTCAGTCTCACTCAAATACTACCTGATTCAGCAGGGGAAAACGTGGAACGATGCTCAGGCTTATTGCCGAGCCAACTATGATGACCTAGCCGAGATCAAGAGTGATGACAACATGATCCGACTTCGGAGTGAAGTACAGAGGCAACGATTCAACTCCAAAGCTTGGATTGGAATGTACATTGACATGAACAGCTGGTACTGGTCTCTTCAAAATGAGCCAGTGGGAAGTACACGTATGTGGGCTACATATTGGAATCAGCCTAACAACGCGGGCGGAAATGAACTGTGTGGCGGGATAGATCCATGGGGTTGGTTGGATGCATTCTGTTACACTTTACTACCCATTGTGTGCTTTGATGGTGAGGAACGACATTGTtctatttgccattttgggtgTTCGAACTATTTGTAACTGTTTGTTTTCGGTGATCTTGCTGAATTTACATATGCTCCAAGGGTCAAAGATATTAAACAGAAAATCTTACATTGCTTTAAAGCTATGTC
>XM_034309487.1
AAACATGGCCACCACCaacacaaacatggccaccactaacacaaacatggccgccaccaacacaaacatggccaccaggGACTACGAAAACTTTTGCAACTGCAGCCATCTCTGCTGTCTgacattatggaaggagtctccagtgtcagagCACTTGGCTCTGGTCTTTGGCTCAGATTGGTGGCTCACGGttcaacccaaaacacacagcatgtttgatttagttcCTATATTTGGGACGATTCAGGatcgaatcactttctcagtGCAGCAAACATCTCAAGTCAACAAACATCTCAAgGAAATAAGAACCGGTTTGCATAGGTCATTTCACACAAAGGAACAAAAGTTCAGTTTGTCAGATTACGGGAGAAGGTTCTCTGAAGGACATATAAAGGACTGCAGAGGGATGTTCAacacatttcttatttcttactGTGCGTCAGTGATGGAGAAGCACCTGTTCAGAATCCTGTTTTTTACTGGCATCATGAACGTCGTCCTGTCAGTCTCACTCAAATACTACCTGATTCAGCAGGGGAAAACGTGGAACGATGCTCAGGCTTATTGCCGAGCCAACTATGATGACCTAGCCGAGATCAAGAGTGATGACAACATGATCCGACTTCGGAGTGAAGTACAGAGGCAACGATTCAACTCCAAAGCTTGGATTGGAATGTACATTGACATGAACAGCTGGTACTGGTCTCTTCAAAATGAGCCAGTGGGAAGTACACGTATGTGGGCTACATATTGGAATCAGCCTAACAACGCGGGCGGAAATGAACTGTGTGGCGGGATAGATCCATGGGGTTGGTTGGATGCATTCTGTTACACTTTACTACCCATTGTGTGCTTTGATGGTGAGGAACGACATTGTtctatttgccattttgggtgTTCGAACTATTTGTAACTGTTTGTTTTCGGTGATCTTGCTGAATTTACATATGCTCCAAGGGTCAAAGATATTAAACAGAAAATCTTACATTGCTTTAAAGCTATGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309486.1 True 1011 mRNA 0.44 5 2245794 2269055
XM_034309487.1 False 1008 mRNA 0.44 5 2245794 2269055

Neighbor

gene id symbol gene type direction distance location
LOC117598663 NA coding downstream 79 2243875 ~ 2245715 (-)
emc9 emc9 coding downstream 21494 2215401 ~ 2224300 (-)
psme2 psme2,LOC107556770,LOC107674582,LOC107716467,LOC107653260,LOC107727955 coding downstream 74103 2166426 ~ 2171691 (-)
LOC113534974 LOC108273474 coding downstream 113552 2124735 ~ 2132242 (-)
buc2l LOC108273451 coding downstream 122522 2119202 ~ 2123272 (-)
med24 med24,LOC107678252,LOC107660474,LOC107706820 coding upstream 39186 2308241 ~ 2334652 (-)
samd14 NA coding upstream 66578 2335633 ~ 2345673 (-)
LOC113547524 gjd3 coding upstream 92769 2361824 ~ 2363285 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding upstream 314726 2583781 ~ 2590145 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding upstream 336978 2606033 ~ 2615766 (-)
G189521 NA non-coding downstream 83223 2160630 ~ 2162571 (-)
G189512 NA non-coding downstream 98879 2146712 ~ 2146915 (-)
G189451 NA non-coding downstream 184529 2048830 ~ 2061265 (-)
G189412 NA non-coding downstream 255639 1989519 ~ 1990155 (-)
G189411 NA non-coding downstream 257563 1987335 ~ 1988231 (-)
G189547 NA non-coding upstream 11491 2280546 ~ 2280753 (-)
G189702 NA non-coding upstream 124971 2394026 ~ 2399476 (-)
G189717 NA non-coding upstream 334138 2603193 ~ 2604096 (-)
G189810 NA non-coding upstream 386248 2655303 ~ 2655507 (-)
G189855 NA non-coding upstream 425725 2694780 ~ 2701420 (-)
LOC113547489 NA other downstream 34815 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 375801 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 472274 1760834 ~ 1773520 (-)
G189199 NA other downstream 674721 1568286 ~ 1571073 (-)
G189180 NA other downstream 680534 1564890 ~ 1565260 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 322182 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 517026 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 523991 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 583000 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2642679 4911734 ~ 4918977 (-)

Expression


Co-expression Network