dclre1a (dclre1a)


Basic Information

Item Value
gene id dclre1a
gene name dclre1a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 13145880 ~ 13155997 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309494.1
TCTTTGCTTCTACAATACATGGCGCCTCGGTCCTGTGTGTAACAGTGTTCAGTAATTTGAGTAAACTCTGATACTGATGTCACAGAGCGAGTCTGAGAGCGACATCTGGGAATACAAATCTCTTAAGAAGActaaaagacaagacaaaactCCGAAATCTAGTGAAGATGGATCAAAGCGACGGAGGCTGGCAAAGCAAGGGGCGTCAAAGAAAAAGTCAGATAAATCCTGCAGAGGGGGTAGATTGAGTACTGAGCCCAAGACAGCGACTAAACTATGTACACAGAGTCAGCCTGTTCAAGTGACCAATGCAGACGGACCACTAACCAAATCCTCCCTACCATCCGGCTCACAGTCAGCCGAAGTGCATGATGGGCCATCAGATCAGTCCAGGGGTTACTGTCCTGTCTGTCAAATGCCATTTTCCATTTTGGTCGTCCAGACAGCACAATGGCATGTTGCTGAATGCCTGGAGAACCCTGGAGAAACAAGTAAAGAATGTCCAGATGGCCTACAATGCTCCTCCTCCATTCCAAACCACTACAAGTGGTACAGCCACTCTCTTTTAGCTCAGTCGAAAGCACTAAATGCCACAGAGTCTGCATCTTCAATACTGGGCCACACGCCTAGATTCCATCTGGAGCAGAAGACGTTTCATAATGATACCATTATTTATAGTAAAGATAGCGTTGTGGACAGTGCTGTCAATCTGTCCACTGCATCCAGCCAGAGTGCCTTTCCTGCTCATGGATCTAGAGAATCTCTTACTCCTGTCCGTCCTAATGCCTTCCAGCTCTTGCGCTCACCAGGGCCTGAGGatattaagaaaaagaaaggctggtccCCTTCTACCAAAGGACCTAGATCTCACACCTCAACTCAGGAAGCTAAAATTAGGATGTCAACCCCAGTGAAAGCAGGAAATGTAAGTCATGATGTTCAGACTAGAGAAGTAAAAGAGGAACCATGTACTTttagggatgatgatgattatatcTCATACTCTCCTCTTTCTGAGCTCCCCTGCTGAGACTGAAGAGAAGCAGATAAAGAAAAACTGTTTCACAGTACAGCACTAGAGGAGGTGAATGAGAAAGATGATCATTCTGATTCACTGATATTGTTCAATGATAGTGCACTGAGTGGTGATGACCTGTTTGCTGATGTCTTGGATCAGTATGAAACCGAGAGAGTCAGAAGTCCAGGAGATCCAGTCATTAAGGAGTCTCTGTACACCTGTGACCAATTAGAGTCATTAGAGTCACATGAACATTTGACAAGTTCCAGCTGTGCAGGCCCTACTGATAGACCTCTTCAGTCCAGTTCCCCTTTTAGACACTCAAAAGACGTGcatgtgaagaaagaaagggaagatAATCCTCAGCTACCGTCTCCTCAAAGTCTGGTCCTGGAACGTCTTCGTGAATGCATATCAACTGCTGCAAAGTTCGAAAGTCTTAATTCTACTTGTGTTGATGTAAAGTCTGATTCTTTGAATCAGGAAATGTCTTCCACTCAAACAATCTTGGCCACTAGGAAACAAACTCTTTCCCTGACACCCAAAAAATCCCAGACCAAAGCAGGAGCATCTGGTTTAAAGCAAACTGATATTGGAGTCTTTTTTGGACTGAAGCCtttgaaagaaaagagagaggaagttaGCACAACTGTGGAAGAGAAAGTCCAGGTGAGCTCTGCTTCAGGGAAGAGCTCAGGAGCCGCAGAGCGACAGACTAGACGGAGGAAGAACACGGCAGTATCTGAAGTGACCACGATGAGGGAAGAAGCAGGAGAAGGAGCTGCTCAGCCTACGCAAACAGAAGGCAGCCGAGGAGCGAGGGCATGGGGAGGAAGAGGTGGAACAAAACAAGAGGCGACAGATGGAGAAGCAGAAGAGCCCAAACGATGCCCGTTCTACAAGAAAATCCCTGGAACGAGTTTTGCTGTGGATGCTTTTCAGTATGGGAATATCAAAGGCATTACGGCCTACTTCCTCACACATTTCCACTCTGATCACTACGGAGGACTGAAGAAAACCTCAACTTTTCCTATCTATTGTAATAAAATAACAGGCAACCTGGTGAAGAGTAAACTGCATGTGGATGAGCAGTATATCCATACTCTCCCCATGAATGAAGAATGTGTAGTTGATGGTGTAAAGGTTATCCTACTAGATGCCAATCACTGTCCAGGATCAGCCATGCTGCTGTTGCTATTGCCAGATGGCCAGACTGTGCTCCACACGGGCGACTTCCGGGCTCATCCGTCCATGGAGCGCTACCCGGAGTTGCAGGGCGTCAGGATTCAGACACTTTATCTGGACACCACGTACTGCAGTCCAGAATATGCATTTCCCACACAGCAGGAAGTGATCACCTTTGCTGCTAACACAGCCTTTGAGCTGGTCACACTCAACCCTAAGACGCTGATTGTGTGTGGCACCTACTCTGTGGGAAAGGAGAAGGTGTTCTTAGCCATTTCTCAGGTGCTGGATTCAAAGGTCTATATGTCCAAAGATCGTTATAAAACCATGTGCTGTCTAGAGTCGGAGCACATCTACCAGTGTATTACCACAGACATGAAGGCAGCTCGGATCCATGTTCTTCCCATGATGCAGATCAATTTCAAGaatttaaaaacatacttGAACAAGTTTTCTGGTACGTATGACCAGCTGGTGGCATTCAAACCCACGGGCTGGACCTTCAGTCAGGAAGTGGGTGTGGCGCACATACAACCTCAGGTCAAAGACAACATCAGTATTTATGGTATTCCATACAGTGAACACAGTAGCTACCTGGAGCTGAAGCGCTTTGTGCAGTGGCTGCGGCCACTGAAGATCATTCCCACAGTGAGCGGGGTGGGCAGTTGGAGCAACAGGAAGGCCATGACCAACTGCTTCAGTGATGAGTGGCAAGCAAGAAGGTTAAAGCTCTAA

Function

symbol description
dclre1a Predicted to enable 5'-3' exodeoxyribonuclease activity and damaged DNA binding activity. Predicted to be involved in double-strand break repair via nonhomologous end joining; interstrand cross-link repair; and protection from non-homologous end joining at telomere. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Orthologous to human DCLRE1A (DNA cross-link repair 1A).

NR:

description
DNA cross-link repair 1A protein

GO: NA

KEGG:

id description
K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309494.1 True 2938 mRNA 0.47 14 13145880 13155997

Neighbor

gene id symbol gene type direction distance location
ccdc186 ccdc186,LOC107755417,LOC107689962 coding upstream 32875 13091186 ~ 13113005 (+)
afap1l2 afap1l2 coding upstream 89105 13025631 ~ 13056775 (+)
gfra1b gfra1,gfra1b,LOC107707958,LOC107581544,LOC107755550,LOC107689950,LOC107702444 coding upstream 308497 12811647 ~ 12837383 (+)
bms1 bms1,LOC107689949,LOC107675025 coding upstream 530662 12596373 ~ 12615218 (+)
mxtx2 LOC108273977 coding upstream 549658 12594495 ~ 12596222 (+)
LOC113527338 dclre1a coding downstream 11089 13167086 ~ 13177922 (+)
si:ch211-28p3.4 LOC108273726,LOC103041412,LOC108426492 coding downstream 37027 13193024 ~ 13195130 (+)
nrap nrap,LOC107755535 coding downstream 48329 13204326 ~ 13219416 (+)
tectb tectb,LOC107684045,LOC107566341,LOC107581573,LOC107755437,LOC107722201,LOC107702437 coding downstream 171703 13327700 ~ 13331070 (+)
acsl5 acsl5,LOC107702457,LOC107755526,LOC107566323,LOC107722228,LOC107684041,LOC107581566 coding downstream 185578 13341575 ~ 13350475 (+)
LOC113527319 NA non-coding upstream 79258 13063864 ~ 13066622 (+)
G195512 NA non-coding upstream 301319 12844325 ~ 12844561 (+)
G195301 NA non-coding upstream 487557 12658105 ~ 12658323 (+)
G195287 NA non-coding upstream 502354 12643268 ~ 12643526 (+)
G195225 NA non-coding upstream 595520 12550134 ~ 12550360 (+)
G195839 NA non-coding downstream 310768 13466765 ~ 13466983 (+)
G195847 NA non-coding downstream 358679 13514676 ~ 13517886 (+)
G195857 NA non-coding downstream 462667 13618664 ~ 13618939 (+)
G195994 NA non-coding downstream 537718 13693715 ~ 13695761 (+)
G196202 NA non-coding downstream 867590 14023587 ~ 14043932 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 123885 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 671897 12472679 ~ 12473983 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other upstream 1060521 12062808 ~ 12085359 (+)
tmem106a tmem106a other upstream 1524611 11613899 ~ 11621269 (+)
trnaq-cug_16 NA other upstream 1859612 11286197 ~ 11286268 (+)
tcf7l2 tcf7l2 other downstream 327304 13483301 ~ 13559085 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other downstream 857576 14013573 ~ 14034143 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other downstream 1131362 14287359 ~ 14324281 (+)
anapc16 anapc16,cj104 other downstream 3699692 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 4389796 17545793 ~ 17572065 (+)

Expression


Co-expression Network