stxbp4 (stxbp4)


Basic Information

Item Value
gene id stxbp4
gene name stxbp4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14712330 ~ 14736267 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309495.1
ATGCCACTGCTGCCAGAGTCAGTGGAGGCAGAGCACTTTGACGGACTATCCCTGCTCTACTGGACAATCATGGGTCCCCATGGCATCAACCGTGCTGTGCAAAGactggaattctctgactgcaGACAAGGACTTGGTGTGAAGATTATTGGAGGTTACAGAGAGCTGAGTGGTGAAGAGTTTGGGATTTTCATTAAGCGAGTGTTACCTGGTGGCATTGCAGCACAGGACGGACGGCTTAAAGCAGGTGACCTCATTTTAGATGTCAACAACATGAATTTAGCAGGCGTTACAAATGAAAgGGCAGTGGAGATTCTGCGCATGGCATCAGCCACGAATCACATGTCTCTTCTGATCGCCCGTGATGAGGAGTCCAGGAGAGAGTTCACTGAGCTCATGGAGAAATATGGCTCTAACAGCAATACAAGCTCAGGAACAGGCAGGATTTCTCCTACTCTTCTCTCTACAGGTAAACTGACTGACAAtgcatcatcatcgtcatcatccaGATCAACAAGCCCTCAGATCTTGAGCCCTAAAGACTGTAGCACAAACCCAATTACTCCACAGGTCTGCTGCGACTGCATGATTCAGCTGATATGTGTCGCAAAGGGAACAGGGCTAGGCTTGGTCATTAAAGGTGGAGCAAACCGTGCAGAAGGGCCAATGGTGTTCATTCAGGAGATCATGCCTGGAGGAGACTGCCAAAGGGATGGAAGACTAAAAGCAGGAGATCAGCTCATATCAATCAATAAAGAGTCCTTAATTGGAGTAACACATGAGGAGGCCAAAAGCATTTTAACCAGAACAAAGCTGAGACCTGATCCGACAGTGGAGATAGCGTTTATCAGGCGGAGGTCTTCCTCTGGCTCCAGCAGTGGTCCACACAGCCCCATTTCCCTGCAGCCCTTATCAACTACAGGCTCCCAGCTCAGACCACTGGCCCTTGGGGGAGTAACTGTAACTATGCCTGGAGGGCTAATGCCCAAAATGAATCCTACCCCTATCTCTGGAAGTGAGACACTGCCTTCTGTCAAACTTACCCAAGTACGAGCAGTACCGGTGAAACCAGAGCTTCCTTCAGTCACTACCCCTGACAGTGCCTGCACCACAGTGGACAATTCTGCTTTGTCTTCAGATGCCACTACTGCCTGTAAGTTCAGCACCACGGTCATGGTCACTCAGCCGAAGCCTTCCTCACTCACATCTAGCTGCCGAATCAAACTGGAGAAGCTGGAGCAGGCACTGGAGGCTTTGGGCTTAAAGCTGACCGAGTCTCAGCTCcagacactgagagacagactcCAGGTGGACCAAGGAGGAACAGTGGCTTATGGAGATTTTGAGACTCTGACGAAGGAATTCTTGAAGCTGACAAACAAATCAGGCGTGCGACAGCAAGCATCCAGAGTCATTTCTGATGATACTGACTTTTCATCAAACCCGCAGGTATCAACATCTGACTCTGATGACCTGGACGAGATggaaagaatgagaaaagaTCACATTGAAGCCTTAAGAGAAATCAAGAGGCTGCAGGATAGGGTGGCTGAGTCTGAGAACCTGTGTCAGGAGATGCAGCAGGAGCTGAATAAAGTCAAGCAGGAGGCAAAAGCGGCTGTGGATGAGAGAAGATCTCTGCAGACGCAGGTCCAGCTGGCTGAGGCTGCGCAGAAGCAGGCACGAGGGATGGAAATGGACTACGAAGAGGTCATCCACCTCCTGGAGGAAGAGATAGCAGAGATGAAGTCTCAGAGAGCAGAAAAGTCAGACCAATCCAAGGAGGATCAGGATTTGAAGAAAAGGCTTGCTTTGCTTGAGTGTCAGTTACGGAAAAGCGAAGTTGCAAAGAAAGGCTTTGAAATTTCTACTGGCAAACTTCTGCACTTTGTGGAgGTCATTCAAGACTTCCTAACAGAGAATCAAGGATCTTATAGTTCTGAAAGTGAGCCAAAGCTGGCTACACTGTCTCAAACTCTGGCTACACAAAGTGGGAGGAAAGTGTCTGGAACAGTCTCCACGCTTGCTCTGGAGGCTCGGGAGCTCATTCACACAGTTCAAGCCATCGTAGAGGTCGACTGTTTACCCTATGGCTGGGATGAAGCATATACTGCAAATGGAGCCAAATACTACATCAACCATGTGACTCAGACAACATCATGGACCCACCCTGTGATGAACTCCTTGGGTCTGTCTGAACCAGACGCAAACAAGCCAACACAGAACTCACCAGAGTCCACAGGCTAGACCCAATCTCACAACAATGGCACTTTTTCTGAAGATCATTtgtttaacaaaccaaaaaagacTAAAACTATTGCATTTAAATACAACTTTACATATAAGTTAAATCCAACTCTGATTAATTTTACCAGTATAAAatccaaacacattttacagTGGGGTTCCAATGATTTTCTGGGCCATATGAAAATGCAGACTGTAGGTGCACTGATCATTTGTAGTACAGATCCCTTAAAGACACTCCTACACCTACTTCCACCAATGCCTCTACATTTCTGATAGATTTTAAAGACTCAGACTTGTTTTCTATTTCAGTCTGACAGGCATGATACTAGATATTGCGTAAAGTGTATACACCATTAACAAAGATTTAGATTAACATTATTAGCAATTTCTGTTATGTTAAACAAATAAGACAAAGTCAGTGGTGTGGTCATTTCATGactgtttctgattttttttttttagaagataCAGTGGAGGTGCATATTGATACAATTTACATTTAGAGAATTTGGCAACCATTAAGTATGTGCTGTCTTTCTGTACCAGAGTTATACTGAAGCTCAGAAGTGATGCCAGATTGATAGAAAGTGCCAGATCTCAGCAGTGTGACTGTTCACAGTAGCTGTTCTTATCACTATATACGATGTCCTACAGGTTGTAGTTA

Function

symbol description
stxbp4 Predicted to enable syntaxin binding activity. Predicted to be involved in insulin receptor signaling pathway and regulation of insulin secretion involved in cellular response to glucose stimulus. Predicted to be active in cytoplasmic vesicle. Orthologous to human STXBP4 (syntaxin binding protein 4).

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
K15302 STXBP4, SYNIP; syntaxin-binding protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309495.1 True 2914 mRNA 0.46 22 14712330 14736267

Neighbor

gene id symbol gene type direction distance location
acsf2 acsf2 coding upstream 102405 14587265 ~ 14609925 (+)
tap2t LOC108273873 coding upstream 134659 14571593 ~ 14577671 (+)
slc16a5a slc16a5 coding upstream 142041 14560553 ~ 14570289 (+)
kctd2 kctd2,LOC107727321,LOC108410512,LOC107666921,LOC107582756 coding upstream 153405 14547948 ~ 14558925 (+)
hexdc hexdc coding upstream 165454 14540500 ~ 14546876 (+)
hlfb LOC108273987 coding downstream 1989 14738256 ~ 14744868 (+)
ankfn1 ankfn1 coding downstream 19361 14755628 ~ 14823551 (+)
nog3 nog coding downstream 88968 14825235 ~ 14826880 (+)
rbfox3a LOC108273414,LOC108435270,LOC107566522,LOC107755508,LOC107581581 coding downstream 156957 14893224 ~ 15220705 (+)
csnk1db csnk1db,LOC103030301,LOC108435268,LOC107566590,LOC107684056,LOC107702480,LOC103369437,LOC108274016,LOC107755503 coding downstream 518998 15255265 ~ 15266918 (+)
G196387 NA non-coding upstream 97673 14605303 ~ 14614657 (+)
G196386 NA non-coding upstream 110891 14597778 ~ 14601439 (+)
G196378 NA non-coding upstream 133872 14577906 ~ 14578458 (+)
G196360 NA non-coding upstream 186247 14523905 ~ 14526083 (+)
G196315 NA non-coding upstream 374060 14337963 ~ 14338270 (+)
G197174 NA non-coding downstream 531032 15267299 ~ 15268740 (+)
G197397 NA non-coding downstream 968865 15705132 ~ 15714087 (+)
G197399 NA non-coding downstream 985328 15721595 ~ 15722402 (+)
G197434 NA non-coding downstream 1117667 15853934 ~ 15856543 (+)
G197498 NA non-coding downstream 1310036 16046303 ~ 16046505 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 388049 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 678187 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 1153245 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1690335 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 2238347 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 2119422 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 2809526 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 3418878 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 3705619 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 4069810 18806077 ~ 18812262 (+)

Expression


Co-expression Network