LOC113535205


Basic Information

Item Value
gene id LOC113535205
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1613996 ~ 1619414 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309506.1
agatgagtgaagACATGACGCTGTGCAGTGTACTGAACGAGATGCGGTTGGAGGGGTCGCTGTGTGACGTGGTCCTCAGAGTGGACAAGGTGGAATTCAAGGTCCACAAGAACATCCTCTCTGGGTACAGCCCATatttcagAGCTCTGTTCACAAGATGGAGCAGCTTGGATCAGATGGTGTACACCATCACTGGTGTATCTCCAGACATCATGGATCTTATAATCCACTACATCTACACCCAGGACATTCAATTCACCACTGATAATGCGCAGGCTCTCTTAGTCATGGCCGATTACCTGCTCATCCGAGACCTTGTTTGCACCTGCTGCGACTTCCTGAAGGCACATCTCAGCCCGGATAACTGCTTAGGGATTTGGCAGTACGCTGATGCTCACTCGTACTATGAGCTGCGAGATCGGGCCTACACCTACGTCCTGCATCACTTTGAGGACATTGTTCGGTCTCCATCCAGTGAGTTCTTGGAGCTGACCGTGGTGCAGCTCGGCAACATCCTGGAGAAGGATGAGCTGAACATCAACCAGGAGAAAACAGCGTTCCGAGCTATAATCAAGTGGATCGAGCACGAATCTAACGTCCGAATGCAGCACATCGTGGACCTGCTGCCGAAGGTGCGGCTGGCTCTGATAAATCCGGAATATTTTCtggaaaatataaagaaaaacctgcTGGTCAGTAGCTTCTGGGAATGTCAGCTCATCATCACCCGCGCCATGAAGGCCTTGTACTACACTAACATGGCTGGACCCAACAGCGGATACCCAGATCCACTCACTCGCCCACGGCTCCCGTATTCCATCTTGTTCGCCATCGGCGGCTTCAGTGGTGCAGCTCCTACAAACATCGTAGAAACCTACGACTCAAGGATGGACAGCTGGATGTGCATCTCCAGCGCAGAACAAAGAGCTCGAGCCTATCACGGCACAGTGCTCCTGGACGATTTTGTGTACATCGTTGGTGGTTTCGACAGCATGGAGTACTTCAACACCGTGTGCAAGTTCAATCCTCTCGATGGAACCTGGAACGAGGTGGCGCCCATGCACTCACGCCGCTGCTATGTTAGCGTGGCCATGCTGGATGGATACATCTATGCAATGGGAGGCTTCGATGGCTTAGTGAGGCTTAACACGGCTGAACGTTATCAGCCAAGCACCAACCAGTGGAGCCTCATCCCATCCATGCACGAGCAACGAAGTGACGCCAGTGCTACGACCTTAAAGGGCAAGATCTACATCTGTGGAGGCTTCAATGGAAACGAGTGTCTCTTCACGGCTGAGTGTTTTGACCCTCATCATGATCAGTGGACGCTGATCGAACCGATGCACACGCGCAGAAGTGGCGTGGGCGTCATCGCTCTTAACAACCAAGTGTTTGCGATCGGGGGTTTTGATGGAGCCAATCGTCTGCAGAGCATCGAAGCCTACAACCCTCGTACCAACTCCTGGAGAATGCTTGCCTCCATGTTTAACCCAAGAAGCAACTTTGGCATCGAGgTGATGGAAGGCCGCTTGTACGTGGTTGGCGGCTACAGCGGTGAAGGCACCACCTCCAACTGCGAGTGCTATGATGAGGATACTGATGACTGGTATGAGCCGTGTACTGTCAGGTTCAACGTCCGGGACATGAATATTTTCCGCAGTGCAGTGAGCTGCTGTGTGATTTCCGGGCTTCCCAACGTCACCGAGTACACCGTCACACGCGATGGCCTCCTGTAGATGCAGAGCTTTTACTTACGCTGAGAAAAACCAAAAGCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309506.1 True 1776 mRNA 0.52 7 1613996 1619414

Neighbor

gene id symbol gene type direction distance location
LOC113535098 LOC108273774 coding downstream 540770 1065924 ~ 1073226 (-)
LOC113535162 NA coding downstream 658155 944848 ~ 955841 (-)
LOC113535267 rnd2,LOC108273785,LOC103364924,LOC102195949 coding downstream 670669 926188 ~ 943327 (-)
becn1 becn1,atg6 coding downstream 725047 882694 ~ 888949 (-)
vps35l c13h16orf62,cunh16orf62,zgc:163107,cssa28h16orf62 coding downstream 734869 868037 ~ 879127 (-)
LOC117598490 NA coding upstream 3266 1622680 ~ 1650547 (-)
LOC113535291 LOC108273550 coding upstream 157390 1776804 ~ 1804114 (-)
si:ch211-217a12.1 si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 coding upstream 193153 1812567 ~ 1822814 (-)
oplah oplah coding upstream 269402 1888816 ~ 1903996 (-)
kcnh4b LOC108273803,LOC103352817 coding upstream 322282 1941696 ~ 1982877 (-)
G189200 NA non-coding downstream 11747 1570108 ~ 1602249 (-)
G189206 NA non-coding downstream 25396 1586131 ~ 1588600 (-)
G189174 NA non-coding downstream 65274 1547696 ~ 1548722 (-)
G189161 NA non-coding downstream 80042 1453904 ~ 1533954 (-)
G189149 NA non-coding downstream 222075 1390363 ~ 1391921 (-)
LOC117598583 NA non-coding upstream 81636 1701050 ~ 1701433 (-)
G189233 NA non-coding upstream 87950 1707364 ~ 1707706 (-)
G189354 NA non-coding upstream 204868 1824282 ~ 1824948 (-)
G189381 NA non-coding upstream 268170 1887584 ~ 1887870 (-)
G189385 NA non-coding upstream 285448 1904862 ~ 1906435 (-)
G189199 NA other downstream 42923 1568286 ~ 1571073 (-)
G189180 NA other downstream 48736 1564890 ~ 1565260 (-)
c12h10orf88 c13h10orf88 other downstream 779236 748738 ~ 834760 (-)
LOC117598518 NA other downstream 975954 636497 ~ 638042 (-)
LOC113534879 NA other upstream 141420 1760834 ~ 1773520 (-)
ppp1r16a ppp1r16a other upstream 205621 1825035 ~ 1869993 (-)
LOC113547489 NA other upstream 574930 2194344 ~ 2210979 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 971823 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 1166667 2786081 ~ 2811391 (-)

Expression


Co-expression Network