cabp5a (cabp5a,LOC108273649,LOC108425940,LOC107562016,LOC107708978,LOC107693687,LOC108246804)


Basic Information

Item Value
gene id cabp5a
gene name cabp5a,LOC108273649,LOC108425940,LOC107562016,LOC107708978,LOC107693687,LOC108246804
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5464205 ~ 5470108 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309511.1
CGGACAGTTCAGCGGAGGACACACAGCGGAGTTTTATATACATTAGGCTTTCtaaacaagaaagagaaaatttaGAGGCAGAGCCGAGCACTGAAGTTCAGCTAAACCTCATCTTCCTGAAAGCAATGACTGCGTGCATCTTCATACGAAGAGGGAAGATTgagaGAGAATTGGCAGATGATGAGATTGAAGCGTTTGAAGAGTTTGATAAGGATAAAGATGGACTGATCAGCTGTAAAGATCTAGGCAACCTGATGAGAACTATGGGTTACATGCCTACGGAGATGGAGCTGATTGAACTGGGCCAGAATATCAATATGAACCTGGGAGGACAGGTGGATTTTGAAGACTTCGTGGAACTGATGGCACCAAAACTCCTGGCTGAAACAGCTGGAATGATCGGCATGAAAGAGCTGCGGGATGCCTTCAAACAGTTTGACATGGACGGCGATGGAGAGATCACGACAGAAGAGCTGAAGTTAGCTATGAATAAGCTGTTGGGAGAAAACATGACTCACAAAGAGATTGACGCCGTGGTCAGAGAGGTCGATGACAATGGTGATGGAACTGTAGACTTTGAAGagtTTGTGAAAATGATGTCAAGCTGCTGAGAGAGGTGCAGAAGTGGGAAGTGATGATGTACAATTACTTTGTTATTGTACTTAAATTGGGTTTTAATGGTCTGTACTTTACTTTCTTTCACCTAATAGTTTTCGACTTTCTCCTCACTACATTTTCACAAACTACATCACTACATTTCTCGATAATCATAGACAGGATTTGTATAATCATGTATAAGGAGTTGATATAATTAAACTTTAACAGACTTAACAGTAAGAATTAGACCTGATACCCATCCCTGTAATCTATCTGTTACTATGTACATGTTGTATTTATCAGGGCAGATTATATTATGAAGGCCAGCTATTATCATTCAGCTAGCTTTTATTGTAAGACTTATGATCATGCTAGcaaacatttgagagattaggattaaggcttttttttcctacattcCTTGATTACTTGGTGAAAGAAGCACTAATTTACCATAagtaactaaaatcag

Function

symbol description
cabp5a Predicted to enable calcium ion binding activity. Is expressed in eye. Orthologous to human CABP5 (calcium binding protein 5).

NR:

description
PREDICTED: calcium-binding protein 5-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23531 CABP1_2_4_5; calcium-binding protein 1/2/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309511.1 True 1069 mRNA 0.40 7 5464205 5470108

Neighbor

gene id symbol gene type direction distance location
dcxr dcxr coding upstream 20327 5436259 ~ 5443878 (+)
rfng rfng coding upstream 29726 5422799 ~ 5434479 (+)
col1a1b LOC108273947,LOC107708989,LOC107693674 coding upstream 59399 5383011 ~ 5404806 (+)
lsm12b lsm12,LOC107708984,LOC107562026,LOC107693683 coding upstream 180055 5267793 ~ 5284150 (+)
tanc2b tanc2b,LOC108274047,LOC107562025,LOC107708983 coding upstream 213693 5077518 ~ 5250512 (+)
nif3l1 nif3l1 coding downstream 7223 5477331 ~ 5484677 (+)
tbx6 tbx6 coding downstream 24798 5494906 ~ 5499745 (+)
LOC113527309 LOC108274209,LOC108273638 coding downstream 156283 5626391 ~ 5665967 (+)
mapk7 mapk7 coding downstream 211933 5682041 ~ 5689581 (+)
mmp25b LOC108273420 coding downstream 276765 5746873 ~ 5766384 (+)
G191273 NA non-coding upstream 81396 5382597 ~ 5382809 (+)
G191267 NA non-coding upstream 97847 5366136 ~ 5366358 (+)
G191266 NA non-coding upstream 100702 5363288 ~ 5363503 (+)
G191258 NA non-coding upstream 154831 5308219 ~ 5309374 (+)
G191032 NA non-coding upstream 181562 5269247 ~ 5282643 (+)
G191310 NA non-coding downstream 42583 5512691 ~ 5513155 (+)
G191375 NA non-coding downstream 126614 5596722 ~ 5667602 (+)
G191329 aldoa,aldoab,LOC107581735 non-coding downstream 144299 5614407 ~ 5619108 (+)
G191386 NA non-coding downstream 200906 5671014 ~ 5671252 (+)
G191387 NA non-coding downstream 202034 5672142 ~ 5672495 (+)
LOC113527051 LOC108274342,LOC108274341,LOC108425932 other upstream 123642 5330042 ~ 5340563 (+)
gngt2b NA other upstream 159296 5303077 ~ 5304909 (+)
G190865 NA other upstream 624836 4755097 ~ 4839369 (+)
lrrc18b lrrc18 other upstream 868176 4593107 ~ 4596029 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other upstream 1533762 3903347 ~ 3930443 (+)
LOC113527671 LOC108441166,LOC108273636 other downstream 260046 5730154 ~ 5740905 (+)
G191581 NA other downstream 499635 5969743 ~ 5983237 (+)
LOC113527389 NA other downstream 1255213 6725321 ~ 6728391 (+)
asah2 asah2,LOC107598643 other downstream 1352632 6822740 ~ 6836383 (+)
tfam tfam other downstream 1958437 7428545 ~ 7436372 (+)

Expression


Co-expression Network