stx4 (stx4,LOC108274127,LOC103026481,LOC108444263)


Basic Information

Item Value
gene id stx4
gene name stx4,LOC108274127,LOC103026481,LOC108444263
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11457352 ~ 11466041 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309517.1
ctgcacacactgcacggCTGTAGAGGGTGTGTATTCTCAGTAGGTGGTGGTGTGCACTGCATGCTGCAGCACGACTCCCGCAGAAGAAGCAGAGAGACTCGGAACCACTTTGAATGGAAACTCCCTTTTTCTCCTGTTACTGTCACACAGTTTGGTAATTTAGATGAAGTAACTCGAACTTCAGAAAGCGGTTATAAACGGAGCAAAAATGCGCGACCGAACCAAAGAACTGGGAAATCCTGCAGATGGCtcggatgaagatgatgaaggcACAGCACTCATGATCAAACCAGGCACAGGGACCTCCATGAAGGAGGACCGAGAGAATGAGTCTTTCTTTCGGAagGTCCATGACATTCGAGAGGGGCTTGAAACTCTTAAGAAGAAAGTATCTGAACtggagaacaaacaaaaaacagttttagGTGTAGCACTTCCAGAGGAAAGTATGAAAAAGGAACTTCAGACTATAAGGGATGAGATCAAAGTATTAGCTAGCCAAATCCAGAAGAAACTGAAGAATATTGAAATCAAGAAACCCGACGAAGATGGGAAATATGTTCCAATAAACTTAAGAATGCAAAGAACACAGcatGCTGTCCTCTCCCGAGACTTCATTGAGTTGATGGGTTACTGTAACACAATTCAGGCTCAGTACAGAGATAGAAATGTAGAGAGGATACAAAGGCAACTCAAAATCACTGGCTCTaatgtgactgatgaacagttGGAGTCAATGCTAGAGAgtggacagacagatgtgtTCACACAAAATATCTTAATAGATGCCCAAGCCACCAGGCAGGCACTAAATGAGATTGAGTCACGGCATGATGAGATTCTTAAACTGGAGAAAAGCATCAGAGATCTTCATGAAATGTTTCAGTATCTTGCCATGGAAGTGGAGGCACAGgGGGAAATGGTTAATCGTATAGAGAACAACATAGTTAACTCTTCTAACTATGTAGTGAAGGCTGTGGAAGACACAAAGGCAGCTGTTGTATCACAAAACAAGGCCAGAAAGaaaaaaatctggATTGCagtgtgcattttaattttacttttgaTAATAATCATTGCCCTGGCTGTTAGTTTGAGCTGAGATGAGTCCAGTACTATTAAAGGAGGTTTGTACACTTCACCAGATAGAGCAAGATATCATTAAATGAAACTTTAATTCACATTCTctcaaaaacatacacaatgGCTCACGCATCTCCTAATTCCAACTTTACTGACATTTCAGCTTGATTGGCTTATATCTGCTGCATTTCATgtagcatttgtttttttttttttagcattaaaaatcttatttatagattaactttttttaattggacCCACATATTTCTCCCTTTGCAGCGTTCTGAAATGTATCTCTGAAATTAGGTGACCCTTTCTGTAACCAGTATCTATACAACGGCTCAAACATTCTTAACATCCTTGATTTCTGCAGTCATTTTTTACGGTTTGAACAGAGATTGGAGAATCCATTTCTGGATCCAAATTCCaagatctagtggaaagccttcctggAAGAGTAAAGGATGtgatagcagcaaagggggaacaacTCTATTAATTCCCATGggtttggaatgggatgttcacatatgggtgtgatggtcaggtgaccacatatttttggccatatagtgtacatacagGGGAAAACAATTTAAAGTGTCTTATAAATATAGTGTCTTATTTAAAGTGTCTCATAAAATTTTGAGCCACCACAACCCTAAAGGATGAAAGACCACTGTTCTAAAACATATTCCCTTAAACATATTCCCTtagatgatggtggtggagagtaCTGTTTAACATATCAGTCCAAAAAATCccatttttcatatatttgtcAGACCTGAGCAGCTCAGATTTAAAAAGACTGATGTGTTACTTGTACAGTGAAGTAttcttaaatattattattgttgttaataatTTGTATTATTTCCCCCTCTTCCCCCAGTGTCCTCCTTCTGCTGGTCTCCTATGCTTTGCATTTTAACAAATTATGTGTAGATGACACAAACCTGTTTTTCACTAGCCACGGTCTCTTCAGCTCTTCCAAGTTAACGATTAATGGCCTTTTGGCATAGAGATGAACACTCGTTTCGAAACTGTTCTGCAATATGATGAATAAGGATcacataaacagtttttttttttaaataacagtgaCATAGAAATAACTCTTCTCAGGAAACCCCAAATGATAAAACAGAGTTTTAATATATAAAGCATACAGAAGAACCTCAGAATCACTGTAAGATATATGAGCTTTGTTTTTATCTTTCTgttgaaaatattatttgttagTATTGTGTTCATTTTGACACTATGTCAGAGAAGAAATTTCTAAAGCTTATGTTACGTCTGTATATACACAAACTAATCTTTTACgtctttgcttttattttacagtatctgctcctgaaatattaattactgTCATTTTCATGTCATAAGATATATGTACTCTTTACCTAATCACAGCTCTTCATGTAGTTCTGTAGTGTGAGCTGCCCTCTACCGTGGAAGCTAGGCAGTAGaaattgttcattaattaagtaacacactaaaaaaatgtgctgtgtTATTTATTTGGGCCTTGTCTCAAATAGACCATGTAGATCTGCTTTTGAAGCATTTGTTATGTACACTCAGTAACTTTCTAGTGCCTTTGCCTTATTAATTGAGGCCTAATTAATTTCGATCTGTATGAATTTAGTGGCAGGTAATATCAGAGTACTGCAGTATTTTGGTGCATGATGTGGTGTCATTTTGTACTGAACTACCTGTAATTTTAATACAGAactgttgttttaaaataaaatgcatcttATACTAAA
>XM_034309518.1
ctgcacacactgcacggCTGTAGAGGGTGTGTATTCTCAGTAGGTGGTGGTGTGCACTGCATGCTGCAGCACGACTCCCGCAGAAGAAGCAGAGAGACTCGGAACCACTTTGAATGGAAACTCCCTTTTTCTCCTGTTACTGTCACACAGTTTGGTAATTTAGATGAAGTAACTCGAACTTCAGAAAGCGGTTATAAACGGAGCAAAAATGCGCGACCGAACCAAAGAACTGGGAAATCCTGCAGATGGCtcggatgaagatgatgaaggcACAGCACTCATGATCAAACCAGGCACAGGGACCTCCATGAAGGAGGACCGAGAGAATGAGTCTTTCTTTCGGAagGTCCATGACATTCGAGAGGGGCTTGAAACTCTTAAGAAGAAAGTATCTGAACtggagaacaaacaaaaaacagttttagGTGTAGCACTTCCAGAGGAAAGTATGAAAAAGGAACTTCAGACTATAAGGGATGAGATCAAAGTATTAGCTAGCCAAATCCAGAAGAAACTGAAGAATATTGAAATCAAGAAACCCGACGAAGATGGGAAATATGTTCCAATAAACTTAAGAATGCAAAGAACACAGcatGCTGTCCTCTCCCGAGACTTCATTGAGTTGATGGGTTACTGTAACACAATTCAGGCTCAGTACAGAGATAGAAATGTAGAGAGGATACAAAGGCAACTCAAAATCACTGGCTCTaatgtgactgatgaacagttGGAGTCAATGCTAGAGAgtggacagacagatgtgtTCACACAAAATATCTTAATAGATGCCCAAGCCACCAGGCAGGCACTAAATGAGATTGAGTCACGGCATGATGAGATTCTTAAACTGGAGAAAAGCATCAGAGATCTTCATGAAATGTTTCAGTATCTTGCCATGGAAGTGGAGGCACAGgGGGAAATGGTTAATCGTATAGAGAACAACATAGTTAACTCTTCTAACTATGTAGTGAAGGCTGTGGAAGACACAAAGGCAGCTGTTGTATCACAAAACAAGGCCAGAAAGaaaaaaatctggATTGCagtgtgcattttaattttacttttgaTAATAATCATTGCCCTGGCTGTTAGTTTGAGCTGAGATGAGTCCAGTACTATTAAAGGAGTGTCCTCCTTCTGCTGGTCTCCTATGCTTTGCATTTTAACAAATTATGTGTAGATGACACAAACCTGTTTTTCACTAGCCACGGTCTCTTCAGCTCTTCCAAGTTAACGATTAATGGCCTTTTGGCATAGAGATGAACACTCGTTTCGAAACTGTTCTGCAATATGATGAATAAGGATcacataaacagtttttttttttaaataacagtgaCAT
>XM_034309519.1
ctgcacacactgcacggCTGTAGAGGGTGTGTATTCTCAGTAGGTGGTGGTGTGCACTGCATGCTGCAGCACGACTCCCGCAGAAGAAGCAGAGAGACTCGGAACCACTTTGAATGGAAACTCCCTTTTTCTCCTGTTACTGTCACACAGTTTGGTAATTTAGATGAAGTAACTCGAACTTCAGAAAGCGGTTATAAACGGAGCAAAAATGCGCGACCGAACCAAAGAACTGGGAAATCCTGCAGATGGCtcggatgaagatgatgaaggcACAGCACTCATGATCAAACCAGGCACAGGGACCTCCATGAAGGAGGACCGAGAGAATGAGTCTTTCTTTCGGAagGTCCATGACATTCGAGAGGGGCTTGAAACTCTTAAGAAGAAAGTATCTGAACtggagaacaaacaaaaaacagttttagGTGTAGCACTTCCAGAGGAAAGTATGAAAAAGGAACTTCAGACTATAAGGGATGAGATCAAAGTATTAGCTAGCCAAATCCAGAAGAAACTGAAGAATATTGAAATCAAGAAACCCGACGAAGATGGGAAATATGTTCCAATAAACTTAAGAATGCAAAGAACACAGcatGCTGTCCTCTCCCGAGACTTCATTGAGTTGATGGGTTACTGTAACACAATTCAGGCTCAGTACAGAGATAGAAATGTAGAGAGGATACAAAGGCAACTCAAAATCACTGGCTCTaatgtgactgatgaacagttGGAGTCAATGCTAGAGAgtggacagacagatgtgtTCACACAAAATATCTTAATAGATGCCCAAGCCACCAGGCAGGCACTAAATGAGATTGAGTCACGGCATGATGAGATTCTTAAACTGGAGAAAAGCATCAGAGATCTTCATGAAATGTTTCAGTATCTTGCCATGGAAGTGGAGGCACAGgGGGAAATGGTTAATCGTATAGAGAACAACATAGTTAACTCTTCTAACTATGTAGTGAAGGCTGTGGAAGACACAAAGGCAGCTGTTGTATCACAAAACAAGGCCAGAAAGaaaaaaatctggATTGCagtgtgcattttaattttacttttgaTAATAATCATTGCCCTGGCTGTTAGTTTGAGCTGAGATGAGTCCAGTACTATTAAAGGAGtatctgctcctgaaatattaattactgTCATTTTCATGTCATAAGATATATGTACTCTTTACCTAATCACAGCTCTTCATGTAGTTCTGTAGTGTGAGCTGCCCTCTACCGTGGAAGCTAGGCAGTAGaaattgttcattaattaagtaacacactaaaaaaatgtgctgtgtTATTTATTTGGGCCTTGTCTCAAATAGACCATGTAGATCTGCTTTTGAAGCATTTGTTATGTACACTCAGTAACTTTCTAGTGCCTTTGCCTTATTAATTGAGGCCTAATTAATTTCGATCTGTATGAATTTAGTGGCAGGTAATATCAGAGTACTGCAGTATTTTGGTGCATGATGTGGTGTCATTTTGTACTGAACTACCTGTAATTTTAATACAGAactgttgttttaaaataaaatgcatcttATACTAAA

Function

symbol description
stx4 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; synaptic vesicle fusion to presynaptic active zone membrane; and vesicle docking. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in presynaptic active zone membrane and synaptic vesicle. Predicted to be integral component of membrane. Orthologous to human STX4 (syntaxin 4).

NR:

description
PREDICTED: syntaxin-4

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K13502 STX4; syntaxin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309517.1 True 2864 mRNA 0.37 10 11457352 11466041
XM_034309518.1 False 1342 mRNA 0.42 11 11457352 11465373
XM_034309519.1 False 1555 mRNA 0.40 11 11457352 11466041

Neighbor

gene id symbol gene type direction distance location
si:dkey-220f10.4 LOC108273760,LOC108444253,LOC106579379,LOC105888833,LOC100695097 coding upstream 2374 11448658 ~ 11454978 (+)
arsg arsg coding upstream 18124 11431921 ~ 11439228 (+)
LOC113527352 amz2 coding upstream 32616 11421153 ~ 11424736 (+)
gna13a LOC108273768,LOC108444258,LOC107660858,LOC107734232,LOC107601276,LOC107584085 coding upstream 37281 11414128 ~ 11420071 (+)
shisa8b LOC108273995 coding upstream 83084 11355205 ~ 11374268 (+)
calcoco2 NA coding downstream 118 11466159 ~ 11471967 (+)
msl1b LOC108273746,LOC108444266 coding downstream 11807 11477848 ~ 11482047 (+)
fbrs fbrs coding downstream 20582 11486623 ~ 11497065 (+)
srcap srcap,LOC107582813,LOC107552729 coding downstream 31277 11497318 ~ 11522715 (+)
ttll6 ttll6 coding downstream 62853 11528894 ~ 11536124 (+)
G194571 LOC108273766 non-coding upstream 78162 11378461 ~ 11379190 (+)
G194360 tnrc6b,LOC105888746,LOC107734183,LOC107554046 non-coding upstream 250376 11135232 ~ 11206976 (+)
G194380 NA non-coding upstream 336802 11120318 ~ 11120550 (+)
G194293 NA non-coding upstream 361174 11093163 ~ 11096178 (+)
G194365 tnfrsf17 non-coding upstream 393670 11062164 ~ 11063682 (+)
G194627 NA non-coding downstream 126851 11592892 ~ 11593091 (+)
G194623 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 131489 11597530 ~ 11602441 (+)
G194748 NA non-coding downstream 252856 11718897 ~ 11719113 (+)
G194828 NA non-coding downstream 572462 12038503 ~ 12038728 (+)
G194989 NA non-coding downstream 673971 12140012 ~ 12140220 (+)
trnaq-cug_16 NA other upstream 171084 11286197 ~ 11286268 (+)
si:ch73-139e5.4 LOC108273417 other upstream 209139 11233590 ~ 11248213 (+)
msrb1b msrb1b,LOC100705913,LOC102780437 other upstream 810805 10644826 ~ 10646547 (+)
arhgap23b LOC108273815 other upstream 1765757 9655287 ~ 9691595 (+)
trnaq-cug_15 NA other upstream 1943517 9513764 ~ 9513835 (+)
tmem106a tmem106a other downstream 147858 11613899 ~ 11621269 (+)
LOC113527436 uts2r,LOC108273405,LOC108426413,LOC107754100,LOC107689263,LOC107552777 other downstream 596767 12062808 ~ 12085359 (+)
LOC113527673 LOC108273669,LOC108273679 other downstream 1006638 12472679 ~ 12473983 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other downstream 1492894 12958935 ~ 13021995 (+)
tcf7l2 tcf7l2 other downstream 2017260 13483301 ~ 13559085 (+)

Expression


Co-expression Network