si:dkey-219e21.4 (LOC108273735)


Basic Information

Item Value
gene id si:dkey-219e21.4
gene name LOC108273735
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 23466357 ~ 23472229 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309526.1
gagagagagagagagagagagagagagagagagagagaaggagagaaagagagaaggagagagagagagggagagaaggagagagcacAAGAACAAATTTTCATTCCTTCACTGTACTAGTTTGCAGAAATGGCAGAGGAAGAGGGCGTGTCACAGCCACCGCCAGCCGATTCGCTCTGTCTGGCCTCAGTCACGCAGCCCTACCCTCGTTCTCCAAAATCACTCCGTAAACCAGGCGCTGACTCGCTCAAATACTCACAGGGACAGCTGTCCTGCTGgctggaggagctggagaaggAGAGCAAGAGGACGGAAGCTCACATGGCGTCTCTGAAAAAGCGCCAAGCCAACCTGACTACGAGTGCCGAGACGATGGAGCAGCAAGTGCGCGAGCGATTCGAGGCCATGCGTCTGGCCCTGGAGAAGGAAGAACAAGCCGTCCTGGACTCGCTAGAACAagagcacagggagaacagCAGCAGAATGACGCGTCTCCTGCACGACTGGAACCAGCACCTGAAACTGGTGCGCAAACACATCAGCACCGTCAGGACACTGCAGGAGGGAGGAGCTGAGAGCCAGCAGCGGGTCTCTCCTGCAGATTTCAGCTGCCATAAGAAGCAGGACGCAGCTGAACTGGCCATCAAGCTGAACGATGAAAAGTTCCAGAAGCTCATGAAGGTTTTGGGGAAGATCTCAAAAGATTTGCAAGTCCAACTACAGAAGAAGAGCTTGCTGCTGGACTCCACTGAGGTGGTGATTGACAGGACAGCCAGCCACAGAAAGATCAAGGTGACTtcaagtgggcggggcttgtacATCTCTCCTGACGACAGCTCGGCTCCTAGCCACCCTCTGCAGTTCGATCAGACCTGCTGTGCCCTGGGCTTGCCCGCTATAAGCTCGGGTCAGTGTTACTGGGAAGTGGACGTTCACTGCTGCCCTTCCTGGGCCGTGGGCGTGGCTTACGGCAGCCTGCACAGGAAAGGGcaggacaaaagcacaaaaCTGGGCAGGAACAGACTCTCGTGGAGTCTGGAGTTTAGGGACGGGCGTCTGATGGCGTGGCACAACGACCGGCACTTGGCTCTGTCCGTTCGGGCGGCACCAGACAAGGTGGGCGTGTTTGTGAACTACCACAAGGGTCGCGTTGCGTTCTACGACGCAGACGCCATGAAGATGCTGCAGGATTTCTCAGCAAGCTGCACGACCGCGTTCGAGAGGGCGCATCACCAGTTCACCGAGCCAGTCTTTCCTGCTTTTCGCTTTTTCAAAGCCAAAGATCGACAGCCTGTTCCAGATCATATGGAGATCTGTTGCCTAGGGCTCTAACGCGTTATTCTGCAGTAACACTGAAATGCAGATAAATCTCATCCCGCagattttagtctttttcctGCAATAACATTTTAACGATCTATGTTTATGCCTAACCAATGCTACATTTTAATGCGACTAAATATCCGGAAACATAACATTGCACTTTAAATCAGTGTGGATTAGTAGTTTAATTTACATCCATGCTTTAATCAAGAGTTTTCAAAATAAACAtggtaaaaaaatttttatgaaaagtaatttaagtattaaataaaacagaaatgtgatGCGACGCCCACATCAATTCATGGTCAGAAACAATCTTTTAGCTTGATCAGTTGagttaaaaatttaataataataataataataataataataataataataataataataatatgcaggAGAGGAGTGATGTTATTCCAGGACCAGGGTGATGATCCACTTATGCAGTTCTTACCTTAGCATAAAACTACTCTAGCCTTAACTTTTAACTAGAAAAAAATCCCAAGATGTGCACTTACCTAAAATCAATATCCAGTAATAAACTCTTCATGGTGTGAGTCTTGTCCTCTCTGCTCCGGATCTTAATCAGCTCATGTAATCTGCGATTAAGTGAAAGTTagtttgtgtaaataaattacttaaataCTTAATTCAGTGTGAAATAACACATCAGGCTAATCTGCAAAATAGTTATGACGAGCTTTAGATAGTAAAGGAGTCACGGAAGTGGGGAACGATGCTGTAACcagaaatttatatttttgcaaTGACAGTCAATAAACAGCGGGGAAGAATCCACAACTGCGAGTCCAAAATGGGCGGGGCATACTCTCTTTCGCCTGTCaatcactagccaatcatgggtgtctgtgagatCATGTAGGCGGAAGAgtgtagatagcactttccttaGATTGTAAGTAGGTTCATTTGTAAGTTCATAAGTAGGTTAACTTGTAGGTTAGTTAGTAAGTTTGTCAGTAGATTAGTTTGTATGTATGTTGGTTAGTTTGTTAGTTTGTAAGTAGGTTAGGTTGTAAACAGGTTAGTTTGAAAGTATGTTTGTAAGTTAGTTTGGAAGTA

Function

NR:

description
tripartite motif-containing protein 14-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309526.1 True 2412 mRNA 0.46 7 23466357 23472229

Neighbor

gene id symbol gene type direction distance location
mfsd8 mfsd8 coding upstream 6852 23447143 ~ 23459505 (+)
si:dkey-219e21.2 LOC108273732 coding upstream 29632 23426875 ~ 23436725 (+)
capgb capg,capgb,LOC107556576,LOC107665882,LOC107657288,LOC107733451,LOC108430072 coding upstream 46293 23402183 ~ 23420064 (+)
LOC113527736 NA coding upstream 145129 23315593 ~ 23321228 (+)
hdlbpb hdlbpb,LOC108273755,LOC108430121,LOC107657280,LOC107584388,LOC107733459,LOC105907188 coding upstream 200957 23239297 ~ 23265400 (+)
ablim2 ablim2 coding downstream 68795 23541024 ~ 23600132 (+)
uros uros coding downstream 575334 24047563 ~ 24064984 (+)
mmp21 mmp21 coding downstream 595310 24067539 ~ 24080612 (+)
ctbp2l ctbp2,LOC105926449,LOC107387783,LOC106955101,LOC103481571 coding downstream 660677 24132906 ~ 24235084 (+)
hpdl hpdl coding downstream 795049 24267278 ~ 24273823 (+)
G201240 NA non-coding upstream 5902 23460002 ~ 23460455 (+)
G201234 NA non-coding upstream 85367 23375074 ~ 23380990 (+)
G201186 NA non-coding upstream 196938 23268627 ~ 23269419 (+)
G201077 NA non-coding upstream 360449 23104676 ~ 23105908 (+)
G201093 NA non-coding upstream 362858 23103284 ~ 23103499 (+)
G201281 NA non-coding downstream 228490 23700719 ~ 23729010 (+)
G201284 NA non-coding downstream 246818 23719047 ~ 23722939 (+)
G201297 NA non-coding downstream 266128 23738357 ~ 23740340 (+)
G201600 NA non-coding downstream 290836 23763065 ~ 23763266 (+)
G201604 NA non-coding downstream 303152 23775381 ~ 23860976 (+)
polr2a polr2a,LOC107733452,LOC107584383 other upstream 67694 23272574 ~ 23398663 (+)
G201214 NA other upstream 136786 23324073 ~ 23329571 (+)
LOC117595720 LOC107714409 other upstream 148203 23311260 ~ 23318154 (+)
G201154 NA other upstream 259978 23205666 ~ 23206379 (+)
mrpl27 mrpl27,LOC107665862,LOC108430158 other upstream 595073 22798142 ~ 22871284 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other downstream 132608 23604837 ~ 23688417 (+)
G201962 NA other downstream 909558 24381787 ~ 24382287 (+)
LOC113527444 chst15 other downstream 983430 24455659 ~ 24506076 (+)
LOC113527710 hmx3 other downstream 1188815 24661044 ~ 24666608 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 1856980 25329209 ~ 25428112 (+)

Expression


Co-expression Network