LOC117598650


Basic Information

Item Value
gene id LOC117598650
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1564045 ~ 1565763 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309527.1
GGCAGCGGGGGCATGGTCAAGTGTCAGCTGCggacggagaggaggcgggtcgaACCGGAAGGTAATGGGTGATGATTCTCATCTGTGTCTTCTTACTGCCAGTTTACttgtttgtgtctctctgtgctTTCATTGACTCCCGTAACTGGCAAGAGAGAGATAGCTGGCGCAGCTTGTGAGACACGCACGAATGCACACAAACCCAAACGTCATGGAGAGTAAACTTGAACTTGATGGAGTGAAAGCTGTGAGTCTGGGGCGCACCGATTTTCTGttgagttgttttgtttttgttgagaTTTTTGAAAGTGCGCTGAAAATTGAAAAGTGCGGACTGAATAAACGCGACCCTCAGGTTGAGCCAAAATTCCGCCTgcctcccgagtcttcctccacaccctcacacaccgggTTCTACAGTCAAACAGCATAGTACTCTCCAACAACAGATCCACACAGGAGGGAAGTCATATCAATGCTCACAATGTGGGAAGAGTTTCTGTGAGAGAGGtccacactcatccacacagGAGAAAAGCCCTATCCTTGCTGTGTGAGAAGGGTTTTACTCAAAAGAGTGATCCCCAACAACATCAGcatattcacacaggagagaagctgTATCGCTGCCTCCAGTGTTCAAAGAGCTTTTGTGAGAGAGGTACTCTGCAACGATACTAGTCTGCACAGGAGAGAGGCTGTATCCTTGcccacagtgtgggaagagttttagaGAGAGCTGTGCTCTTCAacgacaccagcgcattcacacaggggTGAAGATGTATCAGTGTGCTCACTGCAGGAAGTGTTTAACTCAACTGAGTTATCTCCAAGAACACCAGCGTCTTCACACTGGGGAGAAGCCTTATCAGTGCACAGTGTGTGGGAAAAGTTTTACCAGGAAAGGGACTCTCACTAAACATCAACTCatccacacaggagagaagccgtatcctTGCTCCCAGTGtgaaaagagttttattcaCCAGAGCACTCTGCATCTGCACCAGATCatccacacaggagagaagccctATCACTGCTCCCAGTGTGGCAAGAGGTTCAATCGAAACAGTAATCTCCAAGCACACaagctcattcacacacaagaGAATCTGTATCACTGCTCTgaatgtgggaagagttttactcacCAAATTACTCTCCAAAAacatcagcgcattcacacagaaGACAAGCCATATCACTGTTCAgaatgtgggaagagttttagcAAAAGAGGAACTCTTCaacaacaccagcgcattcacactgAACAGAAGCTTTACTGATGTTCTGAGTGTGGGGGAAGTTTCACTCAGCAGGGTGCTCACTGGTGCATTCACACAGGTGAGCaaccgtatcactgctcacagtagGCTGGAGCTCGGCTGTGGAGGCCACCCTGTAggcctctggagggagctctgCAGGGGAGGTCTTAGGGGCCATTTACATGAtgacgttttcagccaaaaacaggaaactttttatgcgttttgcctgttcatttacacgacaacggcgttttggggactgaaaaacgcatatttttgagaacgggtttcaaagtgcaagtttttgaaaacgccgccGTTATTGTCTCCATGTAacccaatacgggaatctttgaaaatgGTGACGTCATGCGCGTGCGTAGTATGTGTTAGGTATatagacatgcgcagtacgtgACTATAGTAAAGGCAAGcgcga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309527.1 True 1719 mRNA 0.48 1 1564045 1565763

Neighbor

gene id symbol gene type direction distance location
LOC113535294 LOC108273771,LOC108273772 coding upstream 71834 1488171 ~ 1492211 (+)
LOC113535212 NA coding upstream 108525 1404288 ~ 1455520 (+)
LOC113530124 LOC108273772,LOC108273771 coding upstream 211072 1344046 ~ 1352973 (+)
LOC113534962 NA coding upstream 223126 1290300 ~ 1340919 (+)
LOC117598519 NA coding upstream 281415 1237398 ~ 1282630 (+)
aclyb LOC108431393,LOC103369716 coding downstream 13534 1579297 ~ 1602265 (+)
klhl11 klhl11,LOC107674689,LOC107556757,LOC107551837 coding downstream 34778 1600541 ~ 1608897 (+)
LOC117598580 NA coding downstream 144186 1709949 ~ 1714497 (+)
LOC113535035 NA coding downstream 273000 1838763 ~ 1844749 (+)
LOC113535036 NA coding downstream 280465 1846228 ~ 1851194 (+)
G189170 NA non-coding upstream 17463 1545798 ~ 1546582 (+)
G188770 NA non-coding upstream 513425 1046500 ~ 1050620 (+)
G188761 NA non-coding upstream 588180 974797 ~ 975865 (+)
G188749 NA non-coding upstream 639555 924285 ~ 924490 (+)
G188747 NA non-coding upstream 641240 922605 ~ 922805 (+)
G189190 NA non-coding downstream 44063 1609826 ~ 1612220 (+)
G189245 NA non-coding downstream 209842 1775605 ~ 1776432 (+)
G189280 NA non-coding downstream 297439 1863202 ~ 1863652 (+)
G189293 NA non-coding downstream 321887 1887650 ~ 1887870 (+)
LOC117598584 NA non-coding downstream 358221 1923984 ~ 1925704 (+)
LOC113535146 LOC108261429 other upstream 589827 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 779054 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 1341626 137521 ~ 222419 (+)
LOC117598477 NA other downstream 1753 1567516 ~ 1665813 (+)
LOC117598558 NA other downstream 371924 1937687 ~ 1952224 (+)
pyyb NA other downstream 959293 2525056 ~ 2528820 (+)
G189864 NA other downstream 1194930 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 1404362 2970125 ~ 3021609 (+)

Expression


Co-expression Network