med24 (med24,LOC107678252,LOC107660474,LOC107706820)


Basic Information

Item Value
gene id med24
gene name med24,LOC107678252,LOC107660474,LOC107706820
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2308241 ~ 2334652 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309549.1
CGTATTCTGAGAAATCCCGCCTTCTACGCCAGGATTGGCTAATACAACTGGATGTTCGACGATACTCTATCATCATTGGGTAATTACAGAACTTTATCACCGTGCTAACCAATCACATCAGAGAAGGCGGGCTTTGGTGGAATATGGGTGCGGAAAACTATAACGTTTGTCTGAACTAAAAAGCTTGCAGTCAAACGTATTCTTATTTAGGAATAAAAGTACAATCAGGTTTTCTTTATGCGTAAATTGAAGATGGTGAACCTGAAGCAAGCCATCCTGCAGGCGTGGAAGGAGCGCTGGAGCGACTATCAGTGGGCCGTCAACATCAAGAAGAACTGCCCCAAAGGAGCCACGTGGGATTACCCCAATCTCGCAGAAGCGTTGTTGGAGCAGGCGATGATCGGACCGTCTCCAAACCCAGTGATTCTCTCCTATTTGAAGTACGCCATCAGTTCCCAGATGGTGTCCTACTCCAGCGTACTCACTGCTGTCAGCAAGTTCGACGATTTCTCGCGAGAACTCTGCGTCAAGTCGCTCCTGGAGATCACGGACATGTTTTCCAACCGTCTCAGCTGCCACGGTAAAGCGGAGGAGTGTATTGCCCTGTGCCGGGCGCTGCTTGGGGCAGTCGTCTGGCTCCTACAGGGCTGCGCCTGGTACTGCGAGAGGCTTAAAGAGTCTAGCGCCGCTCCAGCGGGCGACACCAGCCTCCGGGCTTGCCTGGAGCGCCTGGAGAACCTTCTCCAGCAGGCCAAGAATCGAGCCCTGATGCACATCGCCCGATTGgaggaacaggCTTCCTGGAGCAACATGGAGCAAGCGTTAATCAAACTCACGGAGAATCTGGGCAGCGTGACCAATCAGACGCTGAAGAGCAagctggaggagtgtgtgatgctggTGAAGAGTGTCCCTCAGATGCTGAGCGTCCAGTGTGAGCCGCCCGTCCAGACCTCCTTCCCATCGGTCCACGCTTTCATCATGCTGGAGGGGACCATGAACCTCACGGGGGAGATGCAGCCGCTGGTCGAGCAGCTCATGATGATCAAGAGGATACAGCGCGTTCCAGCGCCGCTGTTTGTCCTCGAGATCTGGAAAGCTTGCTTCACCGGGCTCATCGAGTCTCCAGAAGGCACCGAGGAGCTCAAATGGACCGCGTTCACGTTTCTCAAGATTCCTCAGGTTCTGCTGAGGTTAAAGAAGTACCCACAGGGGGAGAAGGACTTCACGGAGGAAGTGAACATGGCGTTTGAGTATCTGCTGAAGCTCACGCCACTGCTGGACAAAGCCGACCAGAGATGCAAttgcgACTGCCTGAGTCTGCTACTCCAGGAGTGCCACAAACTCTGCTTGCTGACCGAATCCAACATGGCCGCCCTCACCGCTAAACGggcTGAGGACAGGGAATACGCCCCGAAGCTGAAAACGGCAGAGAATGCCAACATCCAGCCGAACCCGGGCCTCATACTCCGTGCCGAGCCGACCGTCACCAACATCCTGAAGaccgTAGATGCTGATCATTCCAAGTCCCCTGAGGGGTTGCTGGGAGTTTTGGGTCACATGCTCTCAGGGAAGAGTTTGGATTTGCTGCTGGCTGCTGCGGCCGCCACCGGGAAACTCAAATCCTTTGCTCGCAAGTTCATCAAGTTAAACGAGTTTCCAAAACATATCAGTGGTGAAGGATCTAAATCTGCTTCAGTGCGAGCTTTGCTGTTTGACATCTCCTTCCTCATGCTGTGTCATGTGGTCCAGACATATGGCTCTGagGTCATCCTGTCTGAGCCGAGTCAATCGGGCGAGACGCCGTTTTTCGAGACGTGGTTGCAGATGTGCATGCCGGAGGAAGGGAAGATCCTGAACCCGGACCATCCCTGCTTCAGGCCCGAACCGGGCAAAGTGGAAAGTCTGGTGGCGTTACTCAACACGTCCTCCGAGATGAAGCTGGTTCAGATGAAGTGGCACGAGATCTGTCTGAGCACgccggcggccatcttggaggTCCTGAACGCGTGGGAAAATGGAGTGCTGTCTGTGGAGACTGTACAGAAGATCACAGAtaacattaaaggaaaagtgtGCAGTATGGCCATATGCGCCGTGGCCTGGCTGGTGGCTCATGTTCGGATGCTGGGATTGgacgagagagagaaaccacaGACCATGATTCGTCAACTTATGACACCTTTGTACGGAGAGAACACGCTTCAGTTTTACAATGAGCGcgtggTAATCATGAGCTCTATCCTGGAGCACATGTGTGCCGACGTGTTCCAGCAGACAGGTCAGTGCGTGCGCTCGGTGGTGGAGCCTCAGGAGCCGCTGCCGTACCGCACCCTCCTGCCCCTGCGCCAACCCATCCGCCAGGCACTGAGCTCCAACTTCCGCATGGCACTCGATAAAGGCTGGGTGGACTCCTGCACTCTACACCTGCTGGAGAACCTGCTGCACATCGGCGGAGTCTTCTGGTTCACCAACAACCTCGTCaagGAGCTCCTGAAGGAGACGCGTAAGGAGTGGGCGTTCCGCGTCGTTGAGCTCCTCTACAGCATCTTCTGCCTGGACCTGCAGCAAATCACGctcactctgattggtcacatTGTGCCCAATCTGCTGACCGACCCCGCCCACTGGCACAGCTTAGCAGATCCACCAGGCCGAGCCCTCGCCAAgttatcAGTGTGGTGCGCTCTCAGTTCCTACTCGTCTCACCATAAAATCCACGCCTTGGCTCGGCAGCGCAAGAGACAGCGCGAGGACATCGAGGACTATAGCAGCCTGTTCCCATTGGACGACACGCAGCCGTCGAAGCTGATGCGTCTGCTCAGCTCTAATGAGGACGAGCCTGCGGTGTTGAGCAGTCCAGGTGACCGCACGATGAGCAGctccctctctgcctctcagCTCCACACAGTCAATATGAGAGATCCACTCAACCGTGTGCTGgCAAATCTGTTCTTGCTCATCTCCTCCATCTTGAGCTCGAAGACCGCCGGCCCTCACACCCAGTTCGTGCAGAGTTTCATCgaggagtgtgtggagtgttcgGAGCAGGGCAGCCGGGGTAGCATCCTGCAGTTCATGCCCTTCACtatggtTTCTGAGCTGGTCAAGCTGCACGCGCTCGCCAAACCCAAAGTTGTCCTGTCCATCACAGATCTGACGCTCCCGCTGGGCCGAAGAGTAGCTGCCAAAGCCATTGCCGCcttatagcacacacacacacacacacacacacacacacacacacacacactcaaagccACTGCGTGATAGCACCATGCAAACCATACTGATTTCCAGTAACCTAACAGCTTGTGGCTTCACAGTTACTCCTGATTTGAACATTACACTTCCACTTCTGAAGTACTTCTTCTGACACCTCTGAAGAATGTCGATGTCATTTGTTTTAGCTTACTTTGCTTGATAGGCATCATCTGATGCTTACCACTAtcaccatcaaaaaaaaaaaaaaaatatggaatgaTGCACTCATGTTTGTATATAGAACTTTTT

Function

symbol description
med24 Predicted to enable transcription coregulator activity. Acts upstream of or within interstitial cell of Cajal differentiation; nervous system development; and thymus development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Is expressed in brain; gut; and head. Used to study Hirschsprung's disease; intestinal disease; and neuropathy. Orthologous to human MED24 (mediator complex subunit 24).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0046549 retinal cone cell development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048538 thymus development biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15167 MED24; mediator of RNA polymerase II transcription subunit 24

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309549.1 True 3513 mRNA 0.54 26 2308241 2334652

Neighbor

gene id symbol gene type direction distance location
LOC117598634 NA coding downstream 39186 2245794 ~ 2269055 (-)
LOC117598663 NA coding downstream 62526 2243875 ~ 2245715 (-)
emc9 emc9 coding downstream 83941 2215401 ~ 2224300 (-)
psme2 psme2,LOC107556770,LOC107674582,LOC107716467,LOC107653260,LOC107727955 coding downstream 136550 2166426 ~ 2171691 (-)
LOC113534974 LOC108273474 coding downstream 175999 2124735 ~ 2132242 (-)
samd14 NA coding upstream 981 2335633 ~ 2345673 (-)
LOC113547524 gjd3 coding upstream 27172 2361824 ~ 2363285 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding upstream 249129 2583781 ~ 2590145 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding upstream 271381 2606033 ~ 2615766 (-)
slc4a1b LOC108273570,LOC108410807 coding upstream 283737 2618389 ~ 2638273 (-)
G189547 NA non-coding downstream 27488 2280546 ~ 2280753 (-)
G189521 NA non-coding downstream 145670 2160630 ~ 2162571 (-)
G189512 NA non-coding downstream 161326 2146712 ~ 2146915 (-)
G189451 NA non-coding downstream 246976 2048830 ~ 2061265 (-)
G189412 NA non-coding downstream 318086 1989519 ~ 1990155 (-)
G189702 NA non-coding upstream 59374 2394026 ~ 2399476 (-)
G189717 NA non-coding upstream 268541 2603193 ~ 2604096 (-)
G189810 NA non-coding upstream 320651 2655303 ~ 2655507 (-)
G189855 NA non-coding upstream 360128 2694780 ~ 2701420 (-)
G189885 NA non-coding upstream 458175 2792827 ~ 2802964 (-)
LOC113547489 NA other downstream 97262 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 438248 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 534721 1760834 ~ 1773520 (-)
G189199 NA other downstream 737168 1568286 ~ 1571073 (-)
G189180 NA other downstream 742981 1564890 ~ 1565260 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 256585 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 451429 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 458394 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 517403 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2577082 4911734 ~ 4918977 (-)

Expression


Co-expression Network