LOC117598661


Basic Information

Item Value
gene id LOC117598661
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6129107 ~ 6135120 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309551.1
TGTGAGATgaagctgaggaggaggaggagagacaatCCCAAACAGGAGGCTGAATATTTCACATCTGCTGCCAAAGACAAGGAGGGATttgatgtgaaatatataaattcatttatagGACGTGGAGTATTcagttgtgttcattttgataaGGGAGATTTTCTTTTGGAGTACAGAGGACAACTCATAAACAAAGCTGAATGTGAACGACGACAGAAGTTATATCACGATGCCATGAAAGCGTTCATGTATGAATTCCGTTTCAATGGAAGACTCTTATGTGTCGATGCTTCCAGAGAAGATGGTTCCCTTGGGAGACTTGTCAATGATGACCACATCAgcccaaacagcaaaatgaaaataatcactgtagaGGGAAAGCctcatctgtgtttatttgcgaCTAGGAGCATCGACCCTGGAGAAGAAATCACATACGATTATGGCAATTCTGAGTTGCCTTGGAGAAATAAGATTGTAGCTGAAGAACACCAACTGCCACCAGAGGAAAACAGCACTATGGCATTGAGTGAGGCCAGGAGGGTGAAAGACAATCAGTCTCTGTCACAGCACCAGGCTGTTTCTGAGGCAGACCCTTTACCCCTGTGACCGAAGATACCCAGGCAGCCATCAACCAAACAGAA
>XM_034309552.1
AGACTGTGTGAGATgaagctgaggaggaggaggagagacaatCCCAAACAGGAGGCTGAATATTTCACATCTGCTGCCAAAGACAAGGAGGGATttgatgtgaaatatataaattcatttatagGACGTGGAGTATTcagttgtgttcattttgataaGGGAGATTTTCTTTTGGAGTACAGAGGACAACTCATAAACAAAGCTGAATGTGAACGACGACAGAAGTTATATCACGATGCCATGAAAGCGTTCATGTATGAATTCCGTTTCAATGGAAGACTCTTATGTGTCGATGCTTCCAGAGAAGATGGTTCCCTTGGGAGACTTGTCAATGATGACCACATCAgcccaaacagcaaaatgaaaataatcactgtagaGGGAAAGCctcatctgtgtttatttgcgaCTAGGAGCATCGACCCTGGAGAAGAAATCACATACGATTATGGCAATTCTGAGTTGCCTTGGAGAAATAAGATTGTAGCTGAAGAACACCAACTGCCACCAGAGGAAAACAGCACTATGGCATTGAGTGAGGCCAGGAGGGTGAAAGACAATCAGTCTCTGTCACAGCACCAGGCTGTTTCTGAGGCAGACCCTTTACCCCTGTGACCGAAGATACCCAGGCAGCCATCAACCAAACAGAACAgAATATAGCTGGAGCCGTCACTGAGGTTACATCAGAGCTGACGTCTGTGATGGACAAGTTGGAGACTGATGTTctgggaggagagacagaaaagAATATAGCTGGAGCCGTCACTGAGGTTACATCAGAGCTGACGTCTGTGATGGACAAGTTGGAGACTGATGTtccaggaggagagacagaaaagaatacAGCTGGAACCATTACTGAGGTTACAACAGTGCTGACGACTATAAAGGACAAGATGGAGTCTGAGGTTCCAagaaaggagacagaaaagATTACCATTGTGAAGGAGCAATCTGGGCCTGAGGAAAAAGATACAATAGCACcaagtgagaaaacagaaaaaAATTGTAAACATGAAATGGTCTTCACAACTGTTTCGAGCATGAACAAATGTGCAGCATGTGTTGGACCTGTAGCATCACTCAAATGGATTGGTCTGAGATGCAAAGtCTGCAATTGTTTTTGGCACAAGTCCTGCTTTGTAAAACTTATTAAGAATGAGTCACTATCATGGGGATGCAGAAGGATCACCCACCAAAAGAAGCCAAAGCTGGATGTTCTGGTTGTATTTTCCAAGTTATATATGtggttttgacttttattttagtcatataactcataattatcatttttgttttacctatttttaatttgaaacaaaagTATATGTCATCATATCTCCCAGTCTTTATGGTTGTATgatgtgcatatttatatacttgtttgtttagtctCAAACACAGATGCTTTGCCCATGTCCCATAGAGCACCTGCTGTTTTATGTGCAATAAGCTGGCTATAAGgttcacaattttaaacatcacaatctaattgattctt

Function

GO: NA

KEGG:

id description
ko05224 Breast cancer

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309551.1 False 644 mRNA 0.44 5 6133944 6135114
XM_034309552.1 True 1501 mRNA 0.41 12 6129107 6135120

Neighbor

gene id symbol gene type direction distance location
LOC117598565 LOC108262318,LOC108273543 coding downstream 18980 6108981 ~ 6110127 (-)
LOC117598474 LOC108262318,LOC108273543 coding downstream 26581 6101081 ~ 6102526 (-)
LOC117598564 LOC108273543,LOC108262318 coding downstream 31202 6091710 ~ 6097905 (-)
zgc:163073 NA coding downstream 117583 6006693 ~ 6011524 (-)
mapta LOC108274153,LOC108441162,LOC103381620 coding downstream 128939 5969736 ~ 6000168 (-)
LOC117598586 LOC108262318,LOC108273543 coding upstream 18670 6153790 ~ 6154882 (-)
LOC117598588 LOC108273543,LOC108262318 coding upstream 27944 6163064 ~ 6164934 (-)
rbp4 rbp4 coding upstream 133753 6268873 ~ 6270634 (-)
fra10ac1 fra10ac1,LOC108274300,LOC107654038,LOC107743956,LOC107664625,LOC107557362 coding upstream 149940 6285060 ~ 6299979 (-)
noc3l noc3l coding upstream 282356 6417476 ~ 6436006 (-)
LOC113527731 NA non-coding downstream 190894 5935539 ~ 5938213 (-)
G191490 NA non-coding downstream 388908 5739978 ~ 5740199 (-)
G191468 NA non-coding downstream 439539 5688594 ~ 5689568 (-)
G191464 NA non-coding downstream 459354 5667884 ~ 5669753 (-)
G191463 NA non-coding downstream 461261 5666173 ~ 5667846 (-)
G191762 NA non-coding upstream 83586 6218706 ~ 6219394 (-)
G191763 NA non-coding upstream 84692 6219812 ~ 6220381 (-)
G191772 kif22 non-coding upstream 116302 6251422 ~ 6252182 (-)
LOC117598466 NA non-coding upstream 124745 6259865 ~ 6261598 (-)
G191786 NA non-coding upstream 155291 6290411 ~ 6290912 (-)
LOC113527291 LOC108274042 other downstream 337837 5768528 ~ 5791270 (-)
G191430 NA other downstream 515153 5611120 ~ 5613954 (-)
gdpd3b gdpd3 other downstream 638182 5484691 ~ 5490925 (-)
LOC113527048 LOC108274181 other downstream 1065689 5059498 ~ 5063418 (-)
G191056 taok2,LOC108273910 other downstream 1176248 4949163 ~ 4952859 (-)
itga3b itga3 other upstream 411821 6546941 ~ 6594390 (-)
ipmkb ipmk other upstream 1264880 7400000 ~ 7418378 (-)
ccdc6b ccdc6,ccdc6b,LOC107695538,LOC107654058,LOC107727062,LOC107746455 other upstream 1446230 7581350 ~ 7595881 (-)
ank3b ank3,LOC107746453,LOC107654059 other upstream 1466098 7601218 ~ 7767512 (-)
si:dkey-94l16.4 LOC108273749 other upstream 2712542 8847662 ~ 8857748 (-)

Expression


Co-expression Network