LOC113527238 (LOC108273610,LOC108261801)


Basic Information

Item Value
gene id LOC113527238
gene name LOC108273610,LOC108261801
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 25154992 ~ 25162871 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309567.1
TCATTTATTTGGAAGCGTGTTGTTCTGGATCGATGCTGGATCAGTTGTCTGACTGCAACGTGTATGCAGTTTCTTCGTGCAAGCCTGATGAATATACCTATGCTTGTTTCTTCGACAAGAAAAGAAACACTTTTCTTTCTGATATCTTCACTTTTAACTGGCTTCATCACATGGACACAGTAAAACTTACTGTGACTTCGTTTGGAGAGCAGTTTTCCTACCTGTTGAAAAACGTGAATGAAGATGCAAGGAAGGCGGGAGTGACTGAGACACCATGTAACTATGGAGACAAGGGCATGCTGAAGTTAATGTTGAGTGAATTTCTTGGAGAATCCCCCGTCTCTGTCAGAGAGGCCTACACGTCCCAGCCCCTGAACATTCAAGTGTCCGATGTGGTAGACACTACAGAAGTTCCACTGATAATCCAAGAAAACAGGATTAAAAATGAACAGGACCCGGAAAAAAGACAGGCCCTGGAAAGACAGTATGATGATCTTAAAAGAAAGAGGAAGACAGTGGATGAAGCGCTGCAGAAGATTGCTAAACACACAAACGCTTCACAAGCTCTGACTGAAAAACGTGAGGTGACTCGCACGTACGAACTCAAAACCGTGGCTGAGCATTTTAGGAAAACTCTCTTCAACTGGGAAAAGGAGCcgttTGTTGTCACTCGGCAACACCTGCAGGTTTTAGTGaatctgtgtgagtgtgggttGGAGGTTGAGAGCATCACTGAAGCCATCACTCACGTGAGCCGGGAGATTACTTTCTGAATAACTCACACACAACTTCacaatcattttcttttaccCATTTTCTTGCTTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309567.1 True 827 mRNA 0.44 7 25154992 25162871

Neighbor

gene id symbol gene type direction distance location
LOC117598682 LOC108273610,LOC108273608,LOC108273529 coding upstream 1095 25146669 ~ 25153897 (+)
LOC113527669 LOC108273607 coding upstream 75163 25063600 ~ 25079829 (+)
lrit2 lrit2 coding upstream 141701 25007848 ~ 25013291 (+)
lrit1b lrit1 coding upstream 151722 24998950 ~ 25003270 (+)
LOC113527566 ikzf5 coding upstream 290311 24861416 ~ 24864681 (+)
LOC113527655 LOC108274290 coding downstream 97869 25260740 ~ 25270653 (+)
LOC117598570 dusp13,LOC108273859,LOC107748394,LOC107595212 coding downstream 219994 25382865 ~ 25386388 (+)
LOC113524867 LOC108273861,LOC108415359,LOC107676426,LOC107597761,LOC107748324,LOC107718692,LOC104943471,LOC108416695 coding downstream 223964 25386835 ~ 25389881 (+)
LOC117598571 LOC108273860,LOC108415358 coding downstream 227826 25390697 ~ 25394302 (+)
LOC117598572 LOC108273858 coding downstream 231467 25394338 ~ 25398017 (+)
LOC113527241 LOC108261801,LOC108273610 non-coding upstream 19827 25134451 ~ 25135165 (+)
G202286 NA non-coding upstream 43508 25110288 ~ 25111484 (+)
G202273 NA non-coding upstream 66279 25086915 ~ 25088713 (+)
G202218 NA non-coding upstream 92823 24973904 ~ 25062169 (+)
G202215 LOC108273604,LOC107756949,LOC107569511,LOC104927182,LOC103142276,LOC103481437 non-coding upstream 181752 24971620 ~ 24973240 (+)
G202290 NA non-coding downstream 23911 25186782 ~ 25189327 (+)
G202310 LOC106943100,LOC106904307,LOC107373152 non-coding downstream 36839 25199710 ~ 25199947 (+)
G202342 NA non-coding downstream 127870 25290741 ~ 25290965 (+)
G202339 NA non-coding downstream 206459 25369330 ~ 25369655 (+)
G202354 NA non-coding downstream 240971 25403842 ~ 25409006 (+)
LOC113527710 hmx3 other upstream 488384 24661044 ~ 24666608 (+)
LOC113527444 chst15 other upstream 648916 24455659 ~ 24506076 (+)
G201962 NA other upstream 772705 24381787 ~ 24382287 (+)
afap1 afap1,LOC107733469,LOC107657296,LOC107584377 other upstream 1466575 23604837 ~ 23688417 (+)
G201214 NA other upstream 1825421 23324073 ~ 23329571 (+)
dupd1 comtd1,cmtd1,LOC108273857 other downstream 166338 25329209 ~ 25428112 (+)
G202397 LOC108273443 other downstream 334844 25497715 ~ 25498919 (+)
G202374 NA other downstream 335309 25498180 ~ 25502628 (+)
LOC117598538 NA other downstream 836780 25999651 ~ 26005825 (+)

Expression


Co-expression Network