si:dkeyp-118b1.2 (si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120)


Basic Information

Item Value
gene id si:dkeyp-118b1.2
gene name si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2606033 ~ 2615766 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309574.1
CTCTTCCGATCGACTCTCTCTCCAGCAGCAGGATCGATTACTCAGGCCTGAGTGCGGTGGAGAATGGAAGTGAGCGCACGCGATGTCGCTGTTTAAAGCCGCTTTTATAAATCTGTGAAGTTAGAGAGGAGAGATTTGTGGCTTCTGCGGTGTTTGAAGCGCGTGTCTGCGGCTGGATGCGCGCGGGGTTCCGGGTTACAGGGCAGATGCTGGGCAGATGagcggcagcagcagcagcagcagcagcagcaggactCACAATAACAGGCGGCCTTTCTGCAGAAGCCCTGTGCTCCAGCATGTAGACGCCTCCTCCTGTAGTCTTCGCCAATGAAAATGGAGGAGACGGCCCTGTCCGGCATGGACAACAGCaaaatggagGGCATTGCTCAGGAGATCCTCTCCGATCTGGTGGAGGACGCATGTCTGGGGCTTTGCTTCGAAGTTCACCGGGCCGTCAAGCAAGGCTACTTCTTCCTGGACGACACGGACCAGGAGAGCATGAAGGACTTCGAAATCGTGGACCAGCCCGGAGTGGACATCTTCGGCCAGGTGTATAACCAGTGGAAGaataaggagtgtgtgtgtcccaacTGCAGCCGGAGCATCGCCGCCTCGCGCTTCGCCCCTCACCTGGAGAAGTGCCTGGGCATGGGTCGCAACAGCAGCCGCATCGCCAACCGCAGGATAGCCAGCGGCAACAACACCAACAAATCCGAGAGCGATCAGGAGGACAACGACGACGTTAACGACAACGACTGGTCCTATGGCGCAGAAAAGAAAGCCAAGAAGAGAAAGGCAGATAAGGTATTTGTACGTTCTTTCAAACCTCCTGCTCTATCGAATCCAAATTCTCCGAGACGATCCAAAtcactaaaacacaaaaacaCCAAAGATCTGTCTTCGTCCTTCAGCTTCGCTGGATCCTAAGCAGCGCCCAGAGTGAAGTTGTTGCTAGGAGATGGGTTTCCACAGCAACGTCGTCAAGAGCTACCCACAATGCCATGTGGTTCACCATAAGGACGCAGCGAGGAACTAATCGGCGTCGATTCTCCATTCAGTTTACACAACTGTTGtcgtgtttgtttgttttttttttttttttctggaatattTGCACAATAAATCAGTGTCCTTGTGTCGATCGTGTAGCTGCGACCTTCAGCGGGACGTAAACGTGACGTTAACGATCAGCAGGAAGAGTTCAGGGAGGACGGAAGGACACCAGCAGGCAGAAGTAGCTGAACGAAGAGTTACTGATGTACTTTCGTTCCTACTCCTGCTGGAGAAGAGGCGCGATCAAAATCCATCGTAATGCTgcttatttcacttttttgggggtttaatcacatttttttgtgcAGAACCAAGAAGACTGAACTCTATACATTGTGCTTGAACTATGAGCAATTATGATCATGTTATTCTCCCAGAAACTGGACTATTATGGACAATATCTGGCAACTTGAAACACATACATATTCCTCTTTCgagaacgaatgaatgaattctcACGTttctccaatttttttttctttttttttttctttttcttcatctctgTGTAATCGATGTTTACAGTGTAAAGGAATTATGTCTTGGCTGTGTTGTGACTGTACACATATTTGACTCGTTGGGGAAAATGCTGCTACACTGGCCATGAGCCACATGCTTACAGGCATGTCACACACCTAATAAACACGACTCAAtacgc
>XM_034309575.1
CCTCTTCCGATCGACTCTCTCTCCAGCAGCAGGATCGATTACTCAGGCCTGAGTGCGGTGGAGAATGGAAGTGAGCGCACGCGATGTCGCTGTTTAAAGCCGCTTTTATAAATCTGTGAAGTTAGAGAGGAGAGATTTGTGGCTTCTGCGGTGTTTGAAGCGCGTGTCTGCGGCTGGATGCGCGCGGGGTTCCGGGTTACAGGGCAGATGCTGGGCAGATGagcggcagcagcagcagcagcagcagcagcaggactCACAATAACAGGCGGCCTTTCTGCAGAAGCCCTGTGCTCCAGCATGTAGACGCCTCCTCCTGTAGTCTTCGCCAATGAAAATGGAGGAGACGGCCCTGTCCGGCATGGACAACAGCaaaatggagGGCATTGCTCAGGAGATCCTCTCCGATCTGGTGGAGGACGCATGTCTGGGGCTTTGCTTCGAAGTTCACCGGGCCGTCAAGCAAGGCTACTTCTTCCTGGACGACACGGACCAGGAGAGCATGAAGGACTTCGAAATCGTGGACCAGCCCGGAGTGGACATCTTCGGCCAGGTGTATAACCAGTGGAAGaataaggagtgtgtgtgtcccaacTGCAGCCGGAGCATCGCCGCCTCGCGCTTCGCCCCTCACCTGGAGAAGTGCCTGGGCATGGGTCGCAACAGCAGCCGCATCGCCAACCGCAGGATAGCCAGCGGCAACAACACCAACAAATCCGAGAGCGATCAGGAGGACAACGACGACGTTAACGACAACGACTGGTCCTATGGCGCAGAAAAGAAAGCCAAGAAGAGAAAGGCAGATAAGGTATTTGTACGTTCTTTCAAACCTCCTGCTCTATCGAATCCAAATTCTCCGAGACGATCCAAAtcactaaaacacaaaaacaCTTCGCTGGATCCTAAGCAGCGCCCAGAGTGAAGTTGTTGCTAGGAGATGGGTTTCCACAGCAACGTCGTCAAGAGCTACCCACAATGCCATGTGGTTCACCATAAGGACGCAGCGAGGAACTAATCGGCGTCGATTCTCCATTCAGTTTACACAACTGTTGtcgtgtttgtttgttttttttttttttttctggaatattTGCACAATAAATCAGTGTCCTTGTGTCGATCGTGTAGCTGCGACCTTCAGCGGGACGTAAACGTGACGTTAACGATCAGCAGGAAGAGTTCAGGGAGGACGGAAGGACACCAGCAGGCAGAAGTAGCTGAACGAAGAGTTACTGATGTACTTTCGTTCCTACTCCTGCTGGAGAAGAGGCGCGATCAAAATCCATCGTAATGCTgcttatttcacttttttgggggtttaatcacatttttttgtgcAGAACCAAGAAGACTGAACTCTATACATTGTGCTTGAACTATGAGCAATTATGATCATGTTATTCTCCCAGAAACTGGACTATTATGGACAATATCTGGCAACTTGAAACACATACATATTCCTCTTTCgagaacgaatgaatgaattctcACGTttctccaatttttttttctttttttttttctttttcttcatctctgTGTAATCGATGTTTACAGTGTAAAGGAATTATGTCTTGGCTGTGTTGTGACTGTACACATATTTGACTCGTTGGGGAAAATGCTGCTACACTGGCCATGAGCCACATGCTTACAGGCATGTCACACACCTAATAAACACGACTCAAtacgc
>XM_034309576.1
CCGATCGACTCTCTCTCCAGCAGCAGGATCGATTACTCAGGCCTGAGTGCGGTGGAGAATGGAAGTGAGCGCACGCGATGTCGCTGTTTAAAGCCGCTTTTATAAATCTGTGAAGTTAGAGAGGAGAGATTTGTGGCTTCTGCGGTGTTTGAAGCGCGTGTCTGCGGCTGGATGCGCGCGGGGTTCCGGGTTACAGGGCAGATGCTGGGCAGATGagcggcagcagcagcagcagcagcagcagcaggactCACAATAACAGGCGGCCTTTCTGCAGAAGCCCTGTGCTCCAGCATGTAGACGCCTCCTCCTGTAGTCTTCGCCAATGAAAATGGAGGAGACGGCCCTGTCCGGCATGGACAACAGCaaaatggagGGCATTGCTCAGGAGATCCTCTCCGATCTGGTGGAGGACGCATGTCTGGGGCTTTGCTTCGAAGTTCACCGGGCCGTCAAGCAAGGCTACTTCTTCCTGGACGACACGGACCAGGAGAGCATGAAGGACTTCGAAATCGTGGACCAGCCCGGAGTGGACATCTTCGGCCAGGTGTATAACCAGTGGAAGaataaggagtgtgtgtgtcccaacTGCAGCCGGAGCATCGCCGCCTCGCGCTTCGCCCCTCACCTGGAGAAGTGCCTGGGCATGGGTCGCAACAGCAGCCGCATCGCCAACCGCAGGATAGCCAGCGGCAACAACACCAACAAATCCGAGAGCGATCAGGAGGACAACGACGACGTTAACGACAACGACTGGTCCTATGGCGCAGAAAAGAAAGCCAAGAAGAGAAAGGCAGATAAGAATCCAAATTCTCCGAGACGATCCAAAtcactaaaacacaaaaacaCCAAAGATCTGTCTTCGTCCTTCAGCTTCGCTGGATCCTAAGCAGCGCCCAGAGTGAAGTTGTTGCTAGGAGATGGGTTTCCACAGCAACGTCGTCAAGAGCTACCCACAATGCCATGTGGTTCACCATAAGGACGCAGCGAGGAACTAATCGGCGTCGATTCTCCATTCAGTTTACACAACTGTTGtcgtgtttgtttgttttttttttttttttctggaatattTGCACAATAAATCAGTGTCCTTGTGTCGATCGTGTAGCTGCGACCTTCAGCGGGACGTAAACGTGACGTTAACGATCAGCAGGAAGAGTTCAGGGAGGACGGAAGGACACCAGCAGGCAGAAGTAGCTGAACGAAGAGTTACTGATGTACTTTCGTTCCTACTCCTGCTGGAGAAGAGGCGCGATCAAAATCCATCGTAATGCTgcttatttcacttttttgggggtttaatcacatttttttgtgcAGAACCAAGAAGACTGAACTCTATACATTGTGCTTGAACTATGAGCAATTATGATCATGTTATTCTCCCAGAAACTGGACTATTATGGACAATATCTGGCAACTTGAAACACATACATATTCCTCTTTCgagaacgaatgaatgaattctcACGTttctccaatttttttttctttttttttttctttttcttcatctctgTGTAATCGATGTTTACAGTGTAAAGGAATTATGTCTTGGCTGTGTTGTGACTGTACACATATTTGACTCGTTGGGGAAAATGCTGCTACACTGGCCATGAGCCACATGCTTACAGGCATGTCACACACCTAATAAACACGACTCAAtacgc
>XM_034309577.1
CCGATCGACTCTCTCTCCAGCAGCAGGATCGATTACTCAGGCCTGAGTGCGGTGGAGAATGGAAGTGAGCGCACGCGATGTCGCTGTTTAAAGCCGCTTTTATAAATCTGTGAAGTTAGAGAGGAGAGATTTGTGGCTTCTGCGGTGTTTGAAGCGCGTGTCTGCGGCTGGATGCGCGCGGGGTTCCGGGTTACAGGGCAGATGCTGGGCAGATGagcggcagcagcagcagcagcagcagcagcaggactCACAATAACAGGCGGCCTTTCTGCAGAAGCCCTGTGCTCCAGCATGTAGACGCCTCCTCCTGTAGTCTTCGCCAATGAAAATGGAGGAGACGGCCCTGTCCGGCATGGACAACAGCaaaatggagGGCATTGCTCAGGAGATCCTCTCCGATCTGGTGGAGGACGCATGTCTGGGGCTTTGCTTCGAAGTTCACCGGGCCGTCAAGCAAGGCTACTTCTTCCTGGACGACACGGACCAGGAGAGCATGAAGGACTTCGAAATCGTGGACCAGCCCGGAGTGGACATCTTCGGCCAGGTGTATAACCAGTGGAAGaataaggagtgtgtgtgtcccaacTGCAGCCGGAGCATCGCCGCCTCGCGCTTCGCCCCTCACCTGGAGAAGTGCCTGGGCATGGGTCGCAACAGCAGCCGCATCGCCAACCGCAGGATAGCCAGCGGCAACAACACCAACAAATCCGAGAGCGATCAGGAGGACAACGACGACGTTAACGACAACGACTGGTCCTATGGCGCAGAAAAGAAAGCCAAGAAGAGAAAGGCAGATAAGAATCCAAATTCTCCGAGACGATCCAAAtcactaaaacacaaaaacaCTTCGCTGGATCCTAAGCAGCGCCCAGAGTGAAGTTGTTGCTAGGAGATGGGTTTCCACAGCAACGTCGTCAAGAGCTACCCACAATGCCATGTGGTTCACCATAAGGACGCAGCGAGGAACTAATCGGCGTCGATTCTCCATTCAGTTTACACAACTGTTGtcgtgtttgtttgttttttttttttttttctggaatattTGCACAATAAATCAGTGTCCTTGTGTCGATCGTGTAGCTGCGACCTTCAGCGGGACGTAAACGTGACGTTAACGATCAGCAGGAAGAGTTCAGGGAGGACGGAAGGACACCAGCAGGCAGAAGTAGCTGAACGAAGAGTTACTGATGTACTTTCGTTCCTACTCCTGCTGGAGAAGAGGCGCGATCAAAATCCATCGTAATGCTgcttatttcacttttttgggggtttaatcacatttttttgtgcAGAACCAAGAAGACTGAACTCTATACATTGTGCTTGAACTATGAGCAATTATGATCATGTTATTCTCCCAGAAACTGGACTATTATGGACAATATCTGGCAACTTGAAACACATACATATTCCTCTTTCgagaacgaatgaatgaattctcACGTttctccaatttttttttctttttttttttctttttcttcatctctgTGTAATCGATGTTTACAGTGTAAAGGAATTATGTCTTGGCTGTGTTGTGACTGTACACATATTTGACTCGTTGGGGAAAATGCTGCTACACTGGCCATGAGCCACATGCTTACAGGCATGTCACACACCTAATAAACACGACTCAAtacgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309574.1 True 1714 mRNA 0.49 8 2606033 2615765
XM_034309575.1 False 1690 mRNA 0.49 8 2606033 2615766
XM_034309576.1 False 1673 mRNA 0.49 8 2606033 2615760
XM_034309577.1 False 1648 mRNA 0.49 8 2606033 2615760

Neighbor

gene id symbol gene type direction distance location
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding downstream 15888 2583781 ~ 2590145 (-)
LOC113547524 gjd3 coding downstream 242748 2361824 ~ 2363285 (-)
samd14 NA coding downstream 260360 2335633 ~ 2345673 (-)
med24 med24,LOC107678252,LOC107660474,LOC107706820 coding downstream 271381 2308241 ~ 2334652 (-)
LOC117598634 NA coding downstream 336978 2245794 ~ 2269055 (-)
slc4a1b LOC108273570,LOC108410807 coding upstream 2623 2618389 ~ 2638273 (-)
LOC113547505 NA coding upstream 116450 2732216 ~ 2745395 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding upstream 240470 2856236 ~ 2864989 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding upstream 258750 2874516 ~ 2896348 (-)
erbb2 erbb2,LOC108273851 coding upstream 308829 2924595 ~ 2952904 (-)
G189717 NA non-coding downstream 1937 2603193 ~ 2604096 (-)
G189702 NA non-coding downstream 206557 2394026 ~ 2399476 (-)
G189547 NA non-coding downstream 325280 2280546 ~ 2280753 (-)
G189521 NA non-coding downstream 443462 2160630 ~ 2162571 (-)
G189512 NA non-coding downstream 459118 2146712 ~ 2146915 (-)
G189810 NA non-coding upstream 39537 2655303 ~ 2655507 (-)
G189855 NA non-coding upstream 79014 2694780 ~ 2701420 (-)
G189885 NA non-coding upstream 177061 2792827 ~ 2802964 (-)
G189882 NA non-coding upstream 180741 2796507 ~ 2827807 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding upstream 295246 2911012 ~ 2911255 (-)
LOC113547489 NA other downstream 395054 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 736040 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 832513 1760834 ~ 1773520 (-)
G189199 NA other downstream 1034960 1568286 ~ 1571073 (-)
G189180 NA other downstream 1040773 1564890 ~ 1565260 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 170315 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 177280 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 236289 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2295968 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 2333397 4949163 ~ 4952859 (-)

Expression


Co-expression Network