ankfn1 (ankfn1)


Basic Information

Item Value
gene id ankfn1
gene name ankfn1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14755628 ~ 14823551 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034309578.1
ATGATTCCTGAGATGAAGATGCACTGTTTATCTAACTCCGCGGCCTAATTACTGCAGCTTCGCAATTTTCCCTCAGCAACTACACAAACATTTCCTGTCCAAAGCTGTCTTCCTTTCGGCGTCCGTCCTCTTTGAAGCTTGGGATCTCTCTGAAACTTCTGAAAGAAACGACTTTTGAACACAGGTCCCAAAAACCAGCCCTTTAAGCTTTGTCAGAGAGCGAGAGCGGAGTGTGAGATGCTGCACTAGGCATGGAAAGTTTGCTTCTCGCTGCGAAGAATAAGTGCCAGATGACAGAGAGGGCAGAGATTGGGTCACTTCCTGATAGCGAACAGGGACCCTACTTGACATGGCTCAACATGGCTTATGAGACGGAGAAGACATGCCTGTTGATTCCTCGGGAATCGCGGGCATCCTGTGTGTTCCACACGGCGGATGAGAAAGATGAAATTCCAGGCATGGGAGAGGACAGTGTTTTAGAGATGCTGAGTTATTCAAAGTTCATGGATCTGGAGTCGTGGCTGTGTATGCCATCAACGTTGCTGCCCAGGAGCTTGGACTCTACCTGCTCTGCCTCACCACTGTCTACTGATAGTgactctggagatgctgaaacCAGCAGGCCCCCTGAGAGGAAGTCTATCTATCTGAACCACTCCCCAGAAAGGGAAAGCTGTCATGTGCCACCTTCCCCCACTGTGCCAGTCTCTGTGACCCCTCAGTCCCCTGTGGCCTCGCAGACCTGCTCCACTCCAGGTCTGAAGCCAGGCACACACTCCTATCAGGACATTGCGAGTGTAAGGAAGCGCCGCCGACTTGCTGCCAGCCCCGGAGGACTGCACTGGAATGCTTCAGGTTCAGTGCTGCGTGAGTATGAGCGAGGAGAGGCGGCTGGTGCGTCGCAACTGAAACGTGTCCCTAAACCTTTGGAGTCTGCGAAACCTGGTGCAGAGCTGTGGGGGGACAGAGCGGCACTCAGGAAGTGTGTGTCGGTGGATGACAGGCTGCTGCAGCAGACGCCCACAGAGCCCGGCACACTGCTGAGCCGCCtggagagaggaaagaagaaacTCAGGAACATCCACAGCCTTGGGGAGACTGGAACATACGAAACCCGTAAAAAATCCGAGAGCAAGATTTCCCGCCTGGCTCAGAGACTCAACCAAAGGCAGAGAGATGCCGCGCTGATCAAGGACTTTCGGCCGCTTCTCTTCTTCAGTGTTTCTCCAGGGAGCTCACAGAGTCTTGACAGGAGCTTCTGTGTTAGTATGACCCAGCAGATGCAGAACCTCCAGCTGAGCCACAATAAGAAGGGGGCCGCTCCCGCCTCCCCCAGCGCAGCCAAGCGCCTTTACCGCAACCTCTCCGAGAAGTTCAAGGGCAGTCACTCGTCCTTTGAGGATGCTTACTTCTTTGGCCGCTCAGATCGCATCCGCAAAGCCTCAAATATTCAGTGCAGCGAGGCTTTATTCGAGGCTGTGGAACAGCAAGACCTGGACGCTGTACAGATCCTTCTGTTCCAGTACACAGCAGATGAACTGGATTTCAATACACCCAACAGCGAAGGGCTGACCCCGCTCGACATCTCCATCATGACCAACAATGTGCCAATAGCCAAGCTGCTGCTCAAAGCGGGGGCCAGAGAGAGCCCACATTttgtgagTCAGGAAAGCCGTGACGCTCATCTCTCAGCACTGGTGCAGGAAGCGCAGAGGCGAGCGAGCGAGCTCTCCACACAGGTGATGAGAGAGAGCCTCAGTCTGGAGACGTCAGACAAGGAGAAGCAGCTCAAGGCCTGGGAGTGGAGATGCAAGCTCTACAAACGCATGCGCACTGGATTTGAGCACGCACAGGCTCCAGAGACTCCGACAGCTGTGCGTTTGACTGTGAGCAGCAGCACATCTCTCACTGTCACATTTCAGGAGCCAGCCAGCATCAATTCAACTGTGGTCACCAGATATAAAGTGGAGTGGAGCTGTCTGAAGGACTTCTCTTTATTAGCTGGAGAACTGATCCTTGAAAATCTACAGTGTCTTAAATGTACAATAACAGGCCTTACAACGGGGAGGCAATACTATGTTCGGGTATCTGCCTACAACATGAAGGGCTGGGGGCCATCACAACTCTCTCAACCTCCTTGTGCTGTTCCCTCCAactggAAGGAGAGCGATGGTAGAGAGTCCCGGCGGAGAGGGCACATTGAGGCCATGGAGAGACTGCTCCAGCAGGTCCGCgccacacaccaacactacagcTGTGGagACACGTCAAAGCTGCAGAACCCCAGTCGCAAGCAATCGGTCTCTAGAAGCCTGAAACATCTCTTTCATTCCTCCACTAAATTTGTCAAAACTCTCAAAAGGGGGATCTACATAGCCGCAGTGTTTTATCATAAGGACAGTCTGCTGGTGACTAATGAGGATCAGATACCCATCGTGGAGGTGGAGGACTCCTACAGCAATTCCCTCATGCAGGACTTTCTGTGGTTTACCAAGCTTTCGTGTATGTGGGAGGATGTCCGATGGCTCAGGCAAAGCATGGCTATTTCCTCCTCGTCCTCGTCCACACTGCAGTCCAGGCAGAAGATGCTGGCTGCCGCCGGCCAGCTACAGAACCTTCTGGGCACGCACAACTTGGGCCGCGTCCACTACGAGCCTATTAAAGACCGCCATGGCAATGTGCTGCTGGTGACAGTCAGGGAGATGGACAGCTCCTATTCGTTCTTCAACGGGAAGTGGATGCAGGTGTCCAAACTGCAGAGCCAGAGAAAGTCTCTGTCCACCCCTGAAGAGCCTTATGCCCTGGACATCCTGCTCATCACCATACAGGACATCCTGGCGTATCAGCGGCGAAGTCAGCACCGTCTCTCTCCAGGCCTGTATCTGGGCTACTTGAAGctcagcagctctgtggatCAGATCAAGGTGCTGGTCCCACAGCGAACACCCAGCATGCTTTGCCATTCCAGAATACGGGAGACAACTGGAATGTCTCCAGATGAGTGGGAATGGCTGAATGCCCTGTCTGGGCCTGAGGAGGTGGAAAGAGCAGATCAGGCAGCAGACTGCAACGCTCCCTTGCTCTTCTGCGAGCTCCAGACAGCCATTAAGAATCTGCTGCGCCAGATCAATCTACCTCTGCACCAGGCTAAGCACTTCCGTCTCTACACACAGGAGGTGCTCGAGTTGGGTCACAATGTGTCCTTTCTTTTGCTGCTGCCTGCCTCAGACGCCGTGTGCACTGCCCCGGGCCAGACCAATCCCTACACACCCCACTCGGGCTTCCTCAACCTCCCTCTTCAAATGTTTGAGCTCGTTCACTTCTGTGCATATAAGGAGAAGTTCATTAGCCTGTACTGCCGCCTGTCCTCTGTGCTTGACCTGGACGCCTTGATAACCCAGCAGGCTTTGAGAGAGGCCATAACAGATACTGAACTGTCCATTGCTAAACAAAGACACCAACATATACTTGACTATATTCAGCAAATGGACGAGATGTGGCGAGATATCCGGTGGATCACTGATGCCCTGCAGTATGCCCGCTATAAACAGCCTCTGGGTGGTGTGCCCATCACAAGGCTGGTGGATGCCAGCTCAGAACCTGTACCACAGAAGTATGACTCCATCTCTTCCAATGCAGACTACCTGCCTACTCCATCTCCCTCACCTGAGTTAAGAAGAAAGGCTACAGACGACTCTCAGGCGGTCTCAGATGAAGAAGGCTGCTCTGAGGTCTTCCTTCCGACAGACAGCGACTATGACTCCAGCGATGCTCTGAGCCCACGAGATCTAGACCTGGTTTATTCTTCAGCCCAGGATCTATCCCATCAGGCTGTGCATACACTGAGCGGCAGCGCCCCTGATGTCCTGCAGATGCATGACCTCAAACCCAGCGCCTGCTCTAAGCTGATGCTGGAGACTGAATCCTTCACTAAAGACCTGGAGGAACTGTCCCTATCTTCTTACTCCAGCAGATCGTCAGAAAAGACGTCCCGCTACAAGCGCAAGCTGCTGTCTAGGAGCCAGCCCCAGAGGAGCTGCTTCAGCGGAACACATCGCTGGCTGAGGGTCCAGAGTGAGAACCAGACATCTTCACTTTCAGAGGGAGTTTACACCCGGCAGAGTGAGCTGGACCTGCCTCTAGAGCTCCCTGTCTCTTTCCCACACTCCTCCTACAGCATGGACGAGTGGAAGGGGAATAACAGGGAGAGCAAACCCACGGTGCGCAGGATCTTTGTGGAGTCGTGCAGTGAGACGTCCCCGAGCAGAGACGGTGCTCGATGGCCAGATGAGAAGGATGAGGAACATGGAGGAGCTGCAGCAGGAGAAACGACAGCTCAGGAAGTGGACTCGGATGACCAAACCAATGAGctggtttctgaaatactcagcaGCACTCTCTAAAATAAACCATCCTGCATTATTATATGTcatgttgatgtgttttgtcatattgccaCCAGACAGCCTCTAAGTGAATACAGTTATGGCATGCAGACTCTCTGTGTTGTAGTATGTGGAAAATTCGTTAATAGAATGTGCAGGAAGAAAAAATAAGTTGCTGGTCAACTCTGTAGAACTCAAACCGTGGCTATGACTGTTAATATACTTACTATTAATGCAACATGAAATAATGTGCTGCTTTAACCTTTGAACTTGAAACTGCCTCTGCATAGACTGATATGACAGGTGAAAGGTGAAAAGTAGTACTTAAATTCCCAGTCTTTAGAATCGGCTTTCAGGTTCAGTTCTTGCCTCTGGCACACACTTACTCTAACCTGAAAAATTCATTAGTGTCAGATATAATTAAAAGAGAATTTAGTCATGATCCGATGGTGCTGAATAGAAACAAACAGTTCACATTACTAAAGCATGGCTTCCAGGCACTTCTAAACCATTGAAAATGATCATGGGCTCAGAATCGTAAATTATCAAATCACCTTTATAAAGGGTCTTAAATGACTTGTTCTAGAAGGTGTGAGTGGATGAAAACCCTTTAGAAACATGCATTGTGGGTATTTGGAAGCTTTTAACTTGTCCACTTTGTTTCAGAAGCGAAAGCTAGTGAACAGGCAGAGGTCTTTGATAACAAACAGCTCGACTTGCATTCAGTTTACCTCTTTCGAATGATTTGtagtgtacatattttattatctGACGTGTCAACAGCGTGAAATGTCTGTCCAAGTTTCTTGGGGTGATCACTATCTTGCTGGCATTAAAACCACTCATGTTTTATGAACAGGCACATAAAAAGAGCACTTTAGAGACCTGTTTACATCCTTTATGCAGCAAATGCAAGTAAAGTTGACATTTTCGTTCTCCTGTTGGCcctagtaaaaataaaacagttttttttaaatatttttttttcattttgcttttaattttggTACTGGACATTTGTACCACTTTATATGAAGGGTATGCACCACTTGGCGACTCTTGGTGTCTTCAAAGCCATAGAGATTTTAAGTGTATGGAGAattatattcttaaaaaaacaattctgtCTGTGGATTCAGTACTGCACTGATTGTGGGGTTGTATACATTCAGCCACAATATATCTCTGTAAATTTATAACGGCTAATCCATGCAGTTTCACTTTAATAACAGTATGTAGAATAGACTGGATACTTAATATTGAAGTATTTAGAGACAAAGCGCTCTTTGTCAGGACAAAAGAGGCAACAAGGGCAGCTTATGTGAGCAACATAGTGAAATTGTCTGTTGCACTGTTATGACTTGTTGATGTTGCAGTGTATTACAAATATGTATTTGCACCATGGTTTCCTCAAAAAATGTTTCTACTGCACTTCTGTCCTTTTAAAGATTGAAATTGTTCCATGCTCCCAATTTCTGTACAGTGATGTCAGTTGAACTAATGATAAAATGCACTACtttatcttgtgtgtgtgtgtgtgtgtgtgtgtttgggctcaGCCCTGAGTATTTACAGTATGTGTTCTGCCTGTTCCCTAATCAGTAATGCATTTAAGTAAAAATTCACTGCAATTacttttgtttaaacaattCTCATTCCAGATAAGGTTAAATGATACGTCTTTGTCATTATACCTTTATACTGTGCACACAGCAAGCCAAAAGCATTGAAGAGCATCATATCTGTATATTTTTGAATTATGCATTTATTGatccaaataatatatttgtgtatCATATTTTTGACAGTTACTGTGTTTTATCCCTGTTTCTATTGTTACTCATTAGCTTTTGCAATGCAACTGAATCTGACCATGTGGCAGATGTGTTTATGAACTTACAAGCAGAAATAAATCACCAACTCGTTGTA

Function

symbol description
ankfn1 Predicted to be involved in establishment of mitotic spindle orientation and regulation of establishment of bipolar cell polarity. Predicted to be active in spindle. Orthologous to human ANKFN1 (ankyrin repeat and fibronectin type III domain containing 1).

NR:

description
PREDICTED: ankyrin repeat and fibronectin type-III domain-containing protein 1-like

GO: NA

KEGG:

id description
K24478 ANKFN1; ankyrin repeat and fibronectin type-III domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034309578.1 True 6314 mRNA 0.48 24 14755628 14823551

Neighbor

gene id symbol gene type direction distance location
hlfb LOC108273987 coding upstream 10760 14738256 ~ 14744868 (+)
stxbp4 stxbp4 coding upstream 19361 14712330 ~ 14736267 (+)
acsf2 acsf2 coding upstream 145703 14587265 ~ 14609925 (+)
tap2t LOC108273873 coding upstream 177957 14571593 ~ 14577671 (+)
slc16a5a slc16a5 coding upstream 185339 14560553 ~ 14570289 (+)
nog3 nog coding downstream 1684 14825235 ~ 14826880 (+)
rbfox3a LOC108273414,LOC108435270,LOC107566522,LOC107755508,LOC107581581 coding downstream 69673 14893224 ~ 15220705 (+)
csnk1db csnk1db,LOC103030301,LOC108435268,LOC107566590,LOC107684056,LOC107702480,LOC103369437,LOC108274016,LOC107755503 coding downstream 431714 15255265 ~ 15266918 (+)
ccdc57 ccdc57 coding downstream 456112 15279663 ~ 15297119 (+)
fasn fasn coding downstream 474923 15298474 ~ 15322043 (+)
G196387 NA non-coding upstream 140971 14605303 ~ 14614657 (+)
G196386 NA non-coding upstream 154189 14597778 ~ 14601439 (+)
G196378 NA non-coding upstream 177170 14577906 ~ 14578458 (+)
G196360 NA non-coding upstream 229545 14523905 ~ 14526083 (+)
G196315 NA non-coding upstream 417358 14337963 ~ 14338270 (+)
G197174 NA non-coding downstream 443748 15267299 ~ 15268740 (+)
G197397 NA non-coding downstream 881581 15705132 ~ 15714087 (+)
G197399 NA non-coding downstream 898044 15721595 ~ 15722402 (+)
G197434 NA non-coding downstream 1030383 15853934 ~ 15856543 (+)
G197498 NA non-coding downstream 1222752 16046303 ~ 16046505 (+)
qki2 qki2,LOC108426533,LOC108274051,LOC103029551,LOC107690925,LOC107755469 other upstream 431347 14287359 ~ 14324281 (+)
tha1 LOC108274193,LOC108426437,LOC102310306,LOC107683136,LOC107722240,LOC107581676 other upstream 721485 14013573 ~ 14034143 (+)
tcf7l2 tcf7l2 other upstream 1196543 13483301 ~ 13559085 (+)
ablim1b ablim1,ablim1b,LOC107565789,LOC107689952,LOC107755543 other upstream 1733633 12958935 ~ 13021995 (+)
LOC113527673 LOC108273669,LOC108273679 other upstream 2281645 12472679 ~ 12473983 (+)
anapc16 anapc16,cj104 other downstream 2032138 16855689 ~ 16863495 (+)
mta3 LOC108273982,LOC108430512,LOC107582777,LOC107728718,LOC107698822 other downstream 2722242 17545793 ~ 17572065 (+)
pde6gb pde6g,LOC102781464,LOC103367935,LOC102221623 other downstream 3331594 18155145 ~ 18160086 (+)
G198737 ppp2r2d,LOC107706599,LOC107653113,LOC107582184,LOC107553689 other downstream 3618335 18441886 ~ 18510159 (+)
si:ch211-221j21.3 LOC108273429 other downstream 3982526 18806077 ~ 18812262 (+)

Expression


Co-expression Network